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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 349, 472 |
| AcsI | RAATTY | 2 cut(s) | 431, 491 |
| AfaI | GTAC | 1 cut(s) | 120 |
| AflII | CTTAAG | 1 cut(s) | 362 |
| AgeI | ACCGGT | 1 cut(s) | 344 |
| AgsI | TTSAA | 1 cut(s) | 107 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 119, 151 |
| AluBI | AGCT | 4 cut(s) | 101, 167, 185, 269 |
| AluI | AGCT | 4 cut(s) | 101, 167, 185, 269 |
| Alw26I | GTCTC | 3 cut(s) | 104, 208, 386 |
| AoxI | GGCC | 1 cut(s) | 318 |
| ApeKI | GCWGC | 4 cut(s) | 152, 167, 287, 426 |
| ApoI | RAATTY | 2 cut(s) | 431, 491 |
| AsiGI | ACCGGT | 1 cut(s) | 344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 504 |
| AspS9I | GGNCC | 1 cut(s) | 319 |
| AsuC2I | CCSGG | 1 cut(s) | 10 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 102, 135 |
| BbvI | GCAGC | 4 cut(s) | 154, 164, 299, 438 |
| BccI | CCATC | 2 cut(s) | 367, 407 |
| BciVI | GTATCC | 1 cut(s) | 268 |
| BcnI | CCSGG | 1 cut(s) | 10 |
| BcoDI | GTCTC | 3 cut(s) | 104, 208, 386 |
| BfrI | CTTAAG | 1 cut(s) | 362 |
| BfuI | GTATCC | 1 cut(s) | 268 |
| BisI | GCNGC | 4 cut(s) | 153, 168, 288, 427 |
| BlpI | GCTNAGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 4 cut(s) | 154, 169, 289, 428 |
| Bme1390I | CCNGG | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 1 cut(s) | 319 |
| BmiI | GGNNCC | 2 cut(s) | 6, 321 |
| BmrFI | CCNGG | 1 cut(s) | 10 |
| BmsI | GCATC | 3 cut(s) | 139, 248, 446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 205, 237 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 1 cut(s) | 171 |
| BpuMI | CCSGG | 1 cut(s) | 10 |
| BsaJI | CCNNGG | 1 cut(s) | 8 |
| BsaWI | WCCGGW | 1 cut(s) | 344 |
| Bse118I | RCCGGY | 1 cut(s) | 344 |
| Bse1I | ACTGG | 1 cut(s) | 509 |
| Bse3DI | GCAATG | 1 cut(s) | 59 |
| BseDI | CCNNGG | 1 cut(s) | 8 |
| BseGI | GGATG | 6 cut(s) | 57, 239, 378, 385, 418, 457 |
| BseMI | GCAATG | 1 cut(s) | 59 |
| BseNI | ACTGG | 1 cut(s) | 509 |
| BseRI | GAGGAG | 1 cut(s) | 404 |
| BseXI | GCAGC | 4 cut(s) | 154, 164, 299, 438 |
| BseYI | CCCAGC | 1 cut(s) | 97 |
| BshFI | GGCC | 1 cut(s) | 320 |
| BshTI | ACCGGT | 1 cut(s) | 344 |
| BsiSI | CCGG | 2 cut(s) | 10, 345 |
| BsmAI | GTCTC | 3 cut(s) | 104, 208, 386 |
| BsnI | GGCC | 1 cut(s) | 320 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 141 |
| BspANI | GGCC | 1 cut(s) | 320 |
| BspLI | GGNNCC | 2 cut(s) | 6, 321 |
| BspTI | CTTAAG | 1 cut(s) | 362 |
| BsrDI | GCAATG | 1 cut(s) | 59 |
| BsrFI | RCCGGY | 1 cut(s) | 344 |
| BsrI | ACTGG | 1 cut(s) | 509 |
| BssAI | RCCGGY | 1 cut(s) | 344 |
| BssECI | CCNNGG | 1 cut(s) | 8 |
| Bst6I | CTCTTC | 2 cut(s) | 102, 381 |
| BstAFI | CTTAAG | 1 cut(s) | 362 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstC8I | GCNNGC | 1 cut(s) | 267 |
| BstDEI | CTNAG | 4 cut(s) | 47, 141, 228, 353 |
| BstF5I | GGATG | 6 cut(s) | 57, 239, 378, 385, 418, 457 |
| BstMAI | GTCTC | 3 cut(s) | 104, 208, 386 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 293 |
| BstNSI | RCATGY | 1 cut(s) | 300 |
| BstSCI | CCNGG | 1 cut(s) | 8 |
| BstV1I | GCAGC | 4 cut(s) | 154, 164, 299, 438 |
| BsuI | GTATCC | 1 cut(s) | 268 |
| BsuRI | GGCC | 1 cut(s) | 320 |
| BtsCI | GGATG | 6 cut(s) | 57, 239, 378, 385, 418, 457 |
| Cac8I | GCNNGC | 1 cut(s) | 267 |
| Cfr10I | RCCGGY | 1 cut(s) | 344 |
| Cfr13I | GGNCC | 1 cut(s) | 319 |
| Csp6I | GTAC | 1 cut(s) | 119 |
| CspAI | ACCGGT | 1 cut(s) | 344 |
| CviAII | CATG | 1 cut(s) | 297 |
| CviJI | RGCY | 8 cut(s) | 5, 26, 101, 155, 167, 185, 269, 320 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 26, 101, 155, 167, 185, 269, 320 |
| CviQI | GTAC | 1 cut(s) | 119 |
| DdeI | CTNAG | 4 cut(s) | 47, 141, 228, 353 |
| Eam1104I | CTCTTC | 2 cut(s) | 102, 381 |
| EarI | CTCTTC | 2 cut(s) | 102, 381 |
| EcoO109I | RGGNCCY | 1 cut(s) | 319 |
| EcoT22I | ATGCAT | 1 cut(s) | 298 |
| FaeI | CATG | 1 cut(s) | 300 |
| FaiI | YATR | 6 cut(s) | 35, 292, 294, 298, 401, 564 |
| FatI | CATG | 1 cut(s) | 296 |
| FauNDI | CATATG | 1 cut(s) | 292 |
| FblI | GTMKAC | 2 cut(s) | 349, 472 |
| Fnu4HI | GCNGC | 4 cut(s) | 153, 168, 288, 427 |
| FokI | GGATG | 6 cut(s) | 64, 226, 385, 392, 425, 464 |
| Fsp4HI | GCNGC | 4 cut(s) | 153, 168, 288, 427 |
| GluI | GCNGC | 4 cut(s) | 153, 168, 288, 427 |
| GsaI | CCCAGC | 1 cut(s) | 101 |
| HaeIII | GGCC | 1 cut(s) | 320 |
| HapII | CCGG | 2 cut(s) | 10, 345 |
| Hin1II | CATG | 1 cut(s) | 300 |
| HpaII | CCGG | 2 cut(s) | 10, 345 |
| Hpy166II | GTNNAC | 3 cut(s) | 350, 473, 514 |
| Hpy188III | TCNNGA | 3 cut(s) | 198, 410, 484 |
| Hpy8I | GTNNAC | 3 cut(s) | 350, 473, 514 |
| HpyAV | CCTTC | 4 cut(s) | 49, 145, 277, 545 |
| HpyCH4V | TGCA | 7 cut(s) | 15, 64, 152, 170, 239, 296, 437 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 293 |
| HpyF3I | CTNAG | 4 cut(s) | 47, 141, 228, 353 |
| Hsp92II | CATG | 1 cut(s) | 300 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| LpnPI | CCDG | 8 cut(s) | 23, 111, 255, 336, 358, 395, 481, 522 |
| Lsp1109I | GCAGC | 4 cut(s) | 154, 164, 299, 438 |
| LweI | GCATC | 3 cut(s) | 139, 248, 446 |
| MaeIII | GTNAC | 3 cut(s) | 90, 357, 554 |
| MboII | GAAGA | 3 cut(s) | 119, 398, 512 |
| MluCI | AATT | 2 cut(s) | 431, 491 |
| MmeI | TCCRAC | 1 cut(s) | 286 |
| MnlI | CCTC | 5 cut(s) | 68, 325, 382, 442, 486 |
| Mph1103I | ATGCAT | 1 cut(s) | 298 |
| MroXI | GAANNNNTTC | 1 cut(s) | 504 |
| MseI | TTAA | 1 cut(s) | 363 |
| MslI | CAYNNNNRTG | 1 cut(s) | 295 |
| MspA1I | CMGCKG | 1 cut(s) | 101 |
| MspCI | CTTAAG | 1 cut(s) | 362 |
| MspI | CCGG | 2 cut(s) | 10, 345 |
| MspR9I | CCNGG | 1 cut(s) | 10 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 293 |
| NciI | CCSGG | 1 cut(s) | 10 |
| NdeI | CATATG | 1 cut(s) | 292 |
| NlaIII | CATG | 1 cut(s) | 300 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 321 |
| NmuCI | GTSAC | 1 cut(s) | 90 |
| NsiI | ATGCAT | 1 cut(s) | 298 |
| NspI | RCATGY | 1 cut(s) | 300 |
| PdmI | GAANNNNTTC | 1 cut(s) | 504 |
| PinAI | ACCGGT | 1 cut(s) | 344 |
| PkrI | GCNGC | 4 cut(s) | 154, 169, 289, 428 |
| PspFI | CCCAGC | 1 cut(s) | 97 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 321 |
| PspPI | GGNCC | 1 cut(s) | 319 |
| PvuII | CAGCTG | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 120 |
| RsaNI | GTAC | 1 cut(s) | 119 |
| RseI | CAYNNNNRTG | 1 cut(s) | 295 |
| SaqAI | TTAA | 1 cut(s) | 363 |
| SatI | GCNGC | 4 cut(s) | 153, 168, 288, 427 |
| Sau96I | GGNCC | 1 cut(s) | 319 |
| ScrFI | CCNGG | 1 cut(s) | 10 |
| SfaNI | GCATC | 3 cut(s) | 139, 248, 446 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 295 |
| SmlI | CTYRAG | 2 cut(s) | 186, 362 |
| SmoI | CTYRAG | 2 cut(s) | 186, 362 |
| Sse9I | AATT | 2 cut(s) | 431, 491 |
| SspI | AATATT | 1 cut(s) | 85 |
| StyD4I | CCNGG | 1 cut(s) | 8 |
| TaqI | TCGA | 1 cut(s) | 422 |
| TasI | AATT | 2 cut(s) | 431, 491 |
| Tru1I | TTAA | 1 cut(s) | 363 |
| Tru9I | TTAA | 1 cut(s) | 363 |
| TseFI | GTSAC | 1 cut(s) | 90 |
| TseI | GCWGC | 4 cut(s) | 152, 167, 287, 426 |
| Tsp45I | GTSAC | 1 cut(s) | 90 |
| TspDTI | ATGAA | 2 cut(s) | 68, 83 |
| Vha464I | CTTAAG | 1 cut(s) | 362 |
| XapI | RAATTY | 2 cut(s) | 431, 491 |
| XceI | RCATGY | 1 cut(s) | 300 |
| XmiI | GTMKAC | 2 cut(s) | 349, 472 |
| XmnI | GAANNNNTTC | 1 cut(s) | 504 |
| Zsp2I | ATGCAT | 1 cut(s) | 298 |