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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 127 |
| AccI | GTMKAC | 1 cut(s) | 24 |
| AclWI | GGATC | 1 cut(s) | 207 |
| AcuI | CTGAAG | 1 cut(s) | 198 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 231 |
| AgeI | ACCGGT | 1 cut(s) | 224 |
| AgsI | TTSAA | 2 cut(s) | 268, 305 |
| AjnI | CCWGG | 1 cut(s) | 109 |
| AleI | CACNNNNGTG | 1 cut(s) | 39 |
| AluBI | AGCT | 2 cut(s) | 89, 341 |
| AluI | AGCT | 2 cut(s) | 89, 341 |
| AlwI | GGATC | 1 cut(s) | 207 |
| AoxI | GGCC | 1 cut(s) | 289 |
| AsiGI | ACCGGT | 1 cut(s) | 224 |
| AsuHPI | GGTGA | 2 cut(s) | 214, 239 |
| BaeGI | GKGCMC | 1 cut(s) | 132 |
| BanI | GGYRCC | 1 cut(s) | 127 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| BccI | CCATC | 2 cut(s) | 263, 342 |
| BciT130I | CCWGG | 1 cut(s) | 111 |
| BfaI | CTAG | 1 cut(s) | 338 |
| Bme1390I | CCNGG | 1 cut(s) | 111 |
| BmiI | GGNNCC | 1 cut(s) | 129 |
| BmrFI | CCNGG | 1 cut(s) | 111 |
| BsaWI | WCCGGW | 1 cut(s) | 224 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 231 |
| Bse118I | RCCGGY | 1 cut(s) | 224 |
| Bse1I | ACTGG | 1 cut(s) | 43 |
| BseBI | CCWGG | 1 cut(s) | 111 |
| BseGI | GGATG | 1 cut(s) | 159 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 231 |
| BseMII | CTCAG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 43 |
| BseSI | GKGCMC | 1 cut(s) | 132 |
| BsgI | GTGCAG | 2 cut(s) | 15, 339 |
| BshFI | GGCC | 1 cut(s) | 291 |
| BshNI | GGYRCC | 1 cut(s) | 127 |
| BshTI | ACCGGT | 1 cut(s) | 224 |
| BsiSI | CCGG | 1 cut(s) | 225 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 231 |
| BsnI | GGCC | 1 cut(s) | 291 |
| Bsp1286I | GDGCHC | 2 cut(s) | 76, 132 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspANI | GGCC | 1 cut(s) | 291 |
| BspCNI | CTCAG | 1 cut(s) | 152 |
| BspLI | GGNNCC | 1 cut(s) | 129 |
| BspPI | GGATC | 1 cut(s) | 207 |
| BspT107I | GGYRCC | 1 cut(s) | 127 |
| BsrFI | RCCGGY | 1 cut(s) | 224 |
| BsrI | ACTGG | 1 cut(s) | 43 |
| BssAI | RCCGGY | 1 cut(s) | 224 |
| BssMI | GATC | 1 cut(s) | 199 |
| Bst2UI | CCWGG | 1 cut(s) | 111 |
| Bst4CI | ACNGT | 3 cut(s) | 163, 301, 317 |
| BstDEI | CTNAG | 1 cut(s) | 139 |
| BstF5I | GGATG | 1 cut(s) | 159 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 211 |
| BstNI | CCWGG | 1 cut(s) | 111 |
| BstSCI | CCNGG | 1 cut(s) | 109 |
| BstSLI | GKGCMC | 1 cut(s) | 132 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BsuRI | GGCC | 1 cut(s) | 291 |
| BtsCI | GGATG | 1 cut(s) | 159 |
| BtsIMutI | CAGTG | 2 cut(s) | 36, 174 |
| Cfr10I | RCCGGY | 1 cut(s) | 224 |
| CspAI | ACCGGT | 1 cut(s) | 224 |
| CviAII | CATG | 2 cut(s) | 10, 196 |
| CviJI | RGCY | 8 cut(s) | 18, 51, 74, 89, 109, 144, 291, 341 |
| CviKI_1 | RGCY | 8 cut(s) | 18, 51, 74, 89, 109, 144, 291, 341 |
| DdeI | CTNAG | 1 cut(s) | 139 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 1 cut(s) | 198 |
| EcoRII | CCWGG | 1 cut(s) | 109 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| FaeI | CATG | 2 cut(s) | 13, 199 |
| FaiI | YATR | 7 cut(s) | 11, 96, 135, 197, 282, 325, 352 |
| FatI | CATG | 2 cut(s) | 9, 195 |
| FblI | GTMKAC | 1 cut(s) | 24 |
| FokI | GGATG | 1 cut(s) | 166 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| FspBI | CTAG | 1 cut(s) | 338 |
| HaeIII | GGCC | 1 cut(s) | 291 |
| HapII | CCGG | 1 cut(s) | 225 |
| Hin1II | CATG | 2 cut(s) | 13, 199 |
| HincII | GTYRAC | 1 cut(s) | 159 |
| HindII | GTYRAC | 1 cut(s) | 159 |
| HinfI | GANTC | 1 cut(s) | 216 |
| HpaII | CCGG | 1 cut(s) | 225 |
| HphI | GGTGA | 2 cut(s) | 214, 239 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 159, 247 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 117 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 159, 247 |
| HpyCH4III | ACNGT | 3 cut(s) | 163, 301, 317 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 272, 320, 358 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 211 |
| HpyF3I | CTNAG | 1 cut(s) | 139 |
| Hsp92II | CATG | 2 cut(s) | 13, 199 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LpnPI | CCDG | 8 cut(s) | 24, 42, 96, 123, 126, 238, 357, 362 |
| MaeI | CTAG | 1 cut(s) | 338 |
| MaeIII | GTNAC | 1 cut(s) | 220 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 1 cut(s) | 191 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MhlI | GDGCHC | 2 cut(s) | 76, 132 |
| MluCI | AATT | 1 cut(s) | 183 |
| MlyI | GAGTC | 1 cut(s) | 210 |
| MmeI | TCCRAC | 1 cut(s) | 86 |
| MnlI | CCTC | 2 cut(s) | 95, 204 |
| MslI | CAYNNNNRTG | 1 cut(s) | 39 |
| MspI | CCGG | 1 cut(s) | 225 |
| MspR9I | CCNGG | 1 cut(s) | 111 |
| MvaI | CCWGG | 1 cut(s) | 111 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 211 |
| NdeII | GATC | 1 cut(s) | 199 |
| NlaIII | CATG | 2 cut(s) | 13, 199 |
| NlaIV | GGNNCC | 1 cut(s) | 129 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| OliI | CACNNNNGTG | 1 cut(s) | 39 |
| PinAI | ACCGGT | 1 cut(s) | 224 |
| PleI | GAGTC | 1 cut(s) | 210 |
| PpsI | GAGTC | 1 cut(s) | 210 |
| Psp6I | CCWGG | 1 cut(s) | 109 |
| PspGI | CCWGG | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 129 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| RseI | CAYNNNNRTG | 1 cut(s) | 39 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| SchI | GAGTC | 1 cut(s) | 210 |
| ScrFI | CCNGG | 1 cut(s) | 111 |
| SduI | GDGCHC | 2 cut(s) | 76, 132 |
| SetI | ASST | 4 cut(s) | 91, 343, 376, 381 |
| SgrAI | CRCCGGYG | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 39 |
| Sse9I | AATT | 1 cut(s) | 183 |
| SspI | AATATT | 1 cut(s) | 264 |
| SspMI | CTAG | 1 cut(s) | 338 |
| StyD4I | CCNGG | 1 cut(s) | 109 |
| TaaI | ACNGT | 3 cut(s) | 163, 301, 317 |
| TasI | AATT | 1 cut(s) | 183 |
| TscAI | CASTG | 2 cut(s) | 43, 181 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 2 cut(s) | 111, 184 |
| TspRI | CASTG | 2 cut(s) | 43, 181 |
| XmiI | GTMKAC | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 338 |