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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 46 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AfaI | GTAC | 2 cut(s) | 182, 320 |
| AflIII | ACRYGT | 1 cut(s) | 321 |
| AgsI | TTSAA | 2 cut(s) | 328, 345 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Ama87I | CYCGRG | 1 cut(s) | 349 |
| AoxI | GGCC | 2 cut(s) | 81, 152 |
| ApeKI | GCWGC | 3 cut(s) | 111, 123, 176 |
| AspLEI | GCGC | 1 cut(s) | 46 |
| AspS9I | GGNCC | 1 cut(s) | 153 |
| AsuC2I | CCSGG | 1 cut(s) | 196 |
| AvaI | CYCGRG | 1 cut(s) | 349 |
| AxyI | CCTNAGG | 1 cut(s) | 9 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BbvI | GCAGC | 3 cut(s) | 123, 135, 188 |
| BccI | CCATC | 1 cut(s) | 165 |
| BcnI | CCSGG | 1 cut(s) | 196 |
| BfaI | CTAG | 1 cut(s) | 216 |
| BisI | GCNGC | 3 cut(s) | 112, 124, 177 |
| BlsI | GCNGC | 3 cut(s) | 113, 125, 178 |
| Bme1390I | CCNGG | 1 cut(s) | 196 |
| BmeT110I | CYCGRG | 1 cut(s) | 349 |
| BmgT120I | GGNCC | 1 cut(s) | 153 |
| BmiI | GGNNCC | 2 cut(s) | 6, 155 |
| BmrFI | CCNGG | 1 cut(s) | 196 |
| BmsI | GCATC | 1 cut(s) | 212 |
| BpuMI | CCSGG | 1 cut(s) | 196 |
| Bsa29I | ATCGAT | 1 cut(s) | 18 |
| BsaBI | GATNNNNATC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| Bse21I | CCTNAGG | 1 cut(s) | 9 |
| Bse8I | GATNNNNATC | 1 cut(s) | 18 |
| BseCI | ATCGAT | 1 cut(s) | 18 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseGI | GGATG | 2 cut(s) | 157, 203 |
| BseJI | GATNNNNATC | 1 cut(s) | 18 |
| BseRI | GAGGAG | 1 cut(s) | 175 |
| BseXI | GCAGC | 3 cut(s) | 123, 135, 188 |
| Bsh1236I | CGCG | 1 cut(s) | 46 |
| Bsh1285I | CGRYCG | 1 cut(s) | 22 |
| BshFI | GGCC | 2 cut(s) | 83, 154 |
| BshVI | ATCGAT | 1 cut(s) | 18 |
| BsiEI | CGRYCG | 1 cut(s) | 22 |
| BsiHKCI | CYCGRG | 1 cut(s) | 349 |
| BsiSI | CCGG | 1 cut(s) | 195 |
| BsmI | GAATGC | 2 cut(s) | 205, 334 |
| BsnI | GGCC | 2 cut(s) | 83, 154 |
| BsoBI | CYCGRG | 1 cut(s) | 349 |
| Bsp143I | GATC | 2 cut(s) | 4, 19 |
| BspANI | GGCC | 2 cut(s) | 83, 154 |
| BspDI | ATCGAT | 1 cut(s) | 18 |
| BspFNI | CGCG | 1 cut(s) | 46 |
| BspHI | TCATGA | 1 cut(s) | 276 |
| BspLI | GGNNCC | 2 cut(s) | 6, 155 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| BssMI | GATC | 2 cut(s) | 4, 19 |
| BssT1I | CCWWGG | 1 cut(s) | 231 |
| BstDEI | CTNAG | 1 cut(s) | 9 |
| BstF5I | GGATG | 2 cut(s) | 157, 203 |
| BstFNI | CGCG | 1 cut(s) | 46 |
| BstHHI | GCGC | 1 cut(s) | 46 |
| BstKTI | GATC | 2 cut(s) | 7, 22 |
| BstMBI | GATC | 2 cut(s) | 4, 19 |
| BstMCI | CGRYCG | 1 cut(s) | 22 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 120, 200 |
| BstNSI | RCATGY | 1 cut(s) | 325 |
| BstSCI | CCNGG | 1 cut(s) | 194 |
| BstUI | CGCG | 1 cut(s) | 46 |
| BstV1I | GCAGC | 3 cut(s) | 123, 135, 188 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 91 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| Bsu15I | ATCGAT | 1 cut(s) | 18 |
| Bsu36I | CCTNAGG | 1 cut(s) | 9 |
| BsuRI | GGCC | 2 cut(s) | 83, 154 |
| BsuTUI | ATCGAT | 1 cut(s) | 18 |
| BtsCI | GGATG | 2 cut(s) | 157, 203 |
| CciI | TCATGA | 1 cut(s) | 276 |
| CfoI | GCGC | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 1 cut(s) | 153 |
| ClaI | ATCGAT | 1 cut(s) | 18 |
| Csp6I | GTAC | 2 cut(s) | 181, 319 |
| CviAII | CATG | 3 cut(s) | 244, 277, 322 |
| CviJI | RGCY | 5 cut(s) | 83, 126, 154, 215, 305 |
| CviKI_1 | RGCY | 5 cut(s) | 83, 126, 154, 215, 305 |
| CviQI | GTAC | 2 cut(s) | 181, 319 |
| DdeI | CTNAG | 1 cut(s) | 9 |
| DpnI | GATC | 2 cut(s) | 6, 21 |
| DpnII | GATC | 2 cut(s) | 4, 19 |
| Eco130I | CCWWGG | 1 cut(s) | 231 |
| Eco32I | GATATC | 1 cut(s) | 16 |
| Eco81I | CCTNAGG | 1 cut(s) | 9 |
| Eco88I | CYCGRG | 1 cut(s) | 349 |
| EcoRV | GATATC | 1 cut(s) | 16 |
| EcoT14I | CCWWGG | 1 cut(s) | 231 |
| EcoT22I | ATGCAT | 1 cut(s) | 205 |
| ErhI | CCWWGG | 1 cut(s) | 231 |
| FaeI | CATG | 3 cut(s) | 247, 280, 325 |
| FaiI | YATR | 4 cut(s) | 245, 272, 278, 323 |
| FatI | CATG | 3 cut(s) | 243, 276, 321 |
| Fnu4HI | GCNGC | 3 cut(s) | 112, 124, 177 |
| FokI | GGATG | 2 cut(s) | 144, 190 |
| Fsp4HI | GCNGC | 3 cut(s) | 112, 124, 177 |
| FspBI | CTAG | 1 cut(s) | 216 |
| GlaI | GCGC | 1 cut(s) | 45 |
| GluI | GCNGC | 3 cut(s) | 112, 124, 177 |
| HaeIII | GGCC | 2 cut(s) | 83, 154 |
| HapII | CCGG | 1 cut(s) | 195 |
| HhaI | GCGC | 1 cut(s) | 46 |
| Hin1II | CATG | 3 cut(s) | 247, 280, 325 |
| Hin6I | GCGC | 1 cut(s) | 44 |
| HinP1I | GCGC | 1 cut(s) | 44 |
| HinfI | GANTC | 1 cut(s) | 251 |
| HpaII | CCGG | 1 cut(s) | 195 |
| Hpy188I | TCNGA | 1 cut(s) | 208 |
| Hpy188III | TCNNGA | 3 cut(s) | 60, 255, 277 |
| HpyCH4V | TGCA | 2 cut(s) | 111, 203 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 120, 200 |
| HpyF3I | CTNAG | 1 cut(s) | 9 |
| Hsp92II | CATG | 3 cut(s) | 247, 280, 325 |
| HspAI | GCGC | 1 cut(s) | 44 |
| Kzo9I | GATC | 2 cut(s) | 4, 19 |
| LpnPI | CCDG | 2 cut(s) | 45, 208 |
| Lsp1109I | GCAGC | 3 cut(s) | 123, 135, 188 |
| LweI | GCATC | 1 cut(s) | 212 |
| MaeI | CTAG | 1 cut(s) | 216 |
| MalI | GATC | 2 cut(s) | 6, 21 |
| MboI | GATC | 2 cut(s) | 4, 19 |
| MboII | GAAGA | 3 cut(s) | 49, 260, 307 |
| MfeI | CAATTG | 1 cut(s) | 89 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MluCI | AATT | 3 cut(s) | 89, 102, 336 |
| MnlI | CCTC | 4 cut(s) | 43, 113, 196, 204 |
| Mph1103I | ATGCAT | 1 cut(s) | 205 |
| MseI | TTAA | 1 cut(s) | 361 |
| MslI | CAYNNNNRTG | 1 cut(s) | 275 |
| MspI | CCGG | 1 cut(s) | 195 |
| MspR9I | CCNGG | 1 cut(s) | 196 |
| MunI | CAATTG | 1 cut(s) | 89 |
| Mva1269I | GAATGC | 2 cut(s) | 205, 334 |
| MvnI | CGCG | 1 cut(s) | 46 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 120, 200 |
| NciI | CCSGG | 1 cut(s) | 196 |
| NdeII | GATC | 2 cut(s) | 4, 19 |
| NlaIII | CATG | 3 cut(s) | 247, 280, 325 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 155 |
| NsiI | ATGCAT | 1 cut(s) | 205 |
| NspI | RCATGY | 1 cut(s) | 325 |
| PagI | TCATGA | 1 cut(s) | 276 |
| PciI | ACATGT | 1 cut(s) | 321 |
| PctI | GAATGC | 2 cut(s) | 205, 334 |
| PfeI | GAWTC | 1 cut(s) | 251 |
| PkrI | GCNGC | 3 cut(s) | 113, 125, 178 |
| Ple19I | CGATCG | 1 cut(s) | 22 |
| PscI | ACATGT | 1 cut(s) | 321 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 155 |
| PspPI | GGNCC | 1 cut(s) | 153 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| PvuI | CGATCG | 1 cut(s) | 22 |
| RsaI | GTAC | 2 cut(s) | 182, 320 |
| RsaNI | GTAC | 2 cut(s) | 181, 319 |
| RseI | CAYNNNNRTG | 1 cut(s) | 275 |
| SaqAI | TTAA | 1 cut(s) | 361 |
| SatI | GCNGC | 3 cut(s) | 112, 124, 177 |
| Sau3AI | GATC | 2 cut(s) | 4, 19 |
| Sau96I | GGNCC | 1 cut(s) | 153 |
| ScrFI | CCNGG | 1 cut(s) | 196 |
| SetI | ASST | 2 cut(s) | 320, 359 |
| SfaNI | GCATC | 1 cut(s) | 212 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 275 |
| Sse9I | AATT | 3 cut(s) | 89, 102, 336 |
| SspMI | CTAG | 1 cut(s) | 216 |
| StyD4I | CCNGG | 1 cut(s) | 194 |
| StyI | CCWWGG | 1 cut(s) | 231 |
| TaqI | TCGA | 3 cut(s) | 18, 188, 254 |
| TasI | AATT | 3 cut(s) | 89, 102, 336 |
| TfiI | GAWTC | 1 cut(s) | 251 |
| Tru1I | TTAA | 1 cut(s) | 361 |
| Tru9I | TTAA | 1 cut(s) | 361 |
| TseI | GCWGC | 3 cut(s) | 111, 123, 176 |
| TspDTI | ATGAA | 2 cut(s) | 90, 265 |
| XceI | RCATGY | 1 cut(s) | 325 |
| XspI | CTAG | 1 cut(s) | 216 |
| Zsp2I | ATGCAT | 1 cut(s) | 205 |