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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 756 |
| AccI | GTMKAC | 1 cut(s) | 334 |
| AccII | CGCG | 2 cut(s) | 528, 603 |
| AccIII | TCCGGA | 1 cut(s) | 1306 |
| AciI | CCGC | 2 cut(s) | 1298, 1367 |
| AclWI | GGATC | 2 cut(s) | 1172, 1185 |
| AcoI | YGGCCR | 2 cut(s) | 853, 1090 |
| AcsI | RAATTY | 3 cut(s) | 293, 353, 424 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 958, 1209 |
| AgeI | ACCGGT | 1 cut(s) | 1202 |
| AjnI | CCWGG | 2 cut(s) | 1087, 1092 |
| AleI | CACNNNNGTG | 2 cut(s) | 1017, 1027 |
| AluBI | AGCT | 9 cut(s) | 29, 175, 415, 545, 872, 948, 1052, 1064, 1491 |
| AluI | AGCT | 9 cut(s) | 29, 175, 415, 545, 872, 948, 1052, 1064, 1491 |
| Alw21I | GWGCWC | 3 cut(s) | 1024, 1054, 1170 |
| Alw26I | GTCTC | 2 cut(s) | 248, 702 |
| Alw44I | GTGCAC | 2 cut(s) | 1020, 1166 |
| AlwI | GGATC | 2 cut(s) | 1172, 1185 |
| Aor13HI | TCCGGA | 1 cut(s) | 1306 |
| AoxI | GGCC | 5 cut(s) | 629, 792, 853, 1090, 1452 |
| ApaLI | GTGCAC | 2 cut(s) | 1020, 1166 |
| ApeKI | GCWGC | 3 cut(s) | 29, 230, 288 |
| ApoI | RAATTY | 3 cut(s) | 293, 353, 424 |
| AsiGI | ACCGGT | 1 cut(s) | 1202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspLEI | GCGC | 1 cut(s) | 528 |
| AspS9I | GGNCC | 3 cut(s) | 792, 1447, 1452 |
| AsuC2I | CCSGG | 3 cut(s) | 151, 1152, 1451 |
| AsuHPI | GGTGA | 5 cut(s) | 529, 811, 1166, 1192, 1217 |
| AsuNHI | GCTAGC | 1 cut(s) | 415 |
| AvaII | GGWCC | 1 cut(s) | 1447 |
| BaeGI | GKGCMC | 2 cut(s) | 1024, 1170 |
| BalI | TGGCCA | 1 cut(s) | 1092 |
| BamHI | GGATCC | 1 cut(s) | 1177 |
| BanII | GRGCYC | 1 cut(s) | 1054 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 3 cut(s) | 1024, 1054, 1170 |
| BbvI | GCAGC | 3 cut(s) | 16, 217, 300 |
| BccI | CCATC | 5 cut(s) | 464, 806, 830, 864, 1241 |
| BceAI | ACGGC | 2 cut(s) | 250, 940 |
| BciT130I | CCWGG | 2 cut(s) | 1089, 1094 |
| BclI | TGATCA | 3 cut(s) | 727, 1009, 1441 |
| BcnI | CCSGG | 3 cut(s) | 151, 1152, 1451 |
| BcoDI | GTCTC | 2 cut(s) | 248, 702 |
| BfaI | CTAG | 5 cut(s) | 195, 416, 1061, 1103, 1492 |
| BfuAI | ACCTGC | 1 cut(s) | 756 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1460 |
| BglII | AGATCT | 1 cut(s) | 844 |
| BisI | GCNGC | 3 cut(s) | 30, 231, 289 |
| BlsI | GCNGC | 3 cut(s) | 31, 232, 290 |
| Bme1390I | CCNGG | 5 cut(s) | 151, 1089, 1094, 1152, 1451 |
| Bme18I | GGWCC | 1 cut(s) | 1447 |
| BmgT120I | GGNCC | 3 cut(s) | 792, 1447, 1452 |
| BmiI | GGNNCC | 2 cut(s) | 454, 1179 |
| BmrFI | CCNGG | 5 cut(s) | 151, 1089, 1094, 1152, 1451 |
| BmsI | GCATC | 4 cut(s) | 308, 547, 595, 969 |
| BmtI | GCTAGC | 1 cut(s) | 419 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BpuMI | CCSGG | 3 cut(s) | 151, 1152, 1451 |
| BsaBI | GATNNNNATC | 1 cut(s) | 726 |
| BsaJI | CCNNGG | 3 cut(s) | 18, 496, 1150 |
| BsaWI | WCCGGW | 2 cut(s) | 1202, 1306 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 29, 59 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 958, 1209 |
| Bse118I | RCCGGY | 1 cut(s) | 1202 |
| Bse1I | ACTGG | 1 cut(s) | 1021 |
| Bse3DI | GCAATG | 1 cut(s) | 12 |
| Bse8I | GATNNNNATC | 1 cut(s) | 726 |
| BseAI | TCCGGA | 1 cut(s) | 1306 |
| BseBI | CCWGG | 2 cut(s) | 1089, 1094 |
| BseDI | CCNNGG | 3 cut(s) | 18, 496, 1150 |
| BseGI | GGATG | 7 cut(s) | 247, 319, 817, 822, 856, 892, 1137 |
| BseJI | GATNNNNATC | 1 cut(s) | 726 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 958, 1209 |
| BseMI | GCAATG | 1 cut(s) | 12 |
| BseMII | CTCAG | 2 cut(s) | 392, 1131 |
| BseNI | ACTGG | 1 cut(s) | 1021 |
| BseRI | GAGGAG | 1 cut(s) | 266 |
| BseSI | GKGCMC | 2 cut(s) | 1024, 1170 |
| BseXI | GCAGC | 3 cut(s) | 16, 217, 300 |
| BsgI | GTGCAG | 1 cut(s) | 216 |
| Bsh1236I | CGCG | 2 cut(s) | 528, 603 |
| BshFI | GGCC | 5 cut(s) | 631, 794, 855, 1092, 1454 |
| BshTI | ACCGGT | 1 cut(s) | 1202 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1024, 1054, 1170 |
| BsiSI | CCGG | 5 cut(s) | 151, 1152, 1203, 1307, 1450 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 958, 1209 |
| BsmAI | GTCTC | 2 cut(s) | 248, 702 |
| BsmI | GAATGC | 1 cut(s) | 1302 |
| BsnI | GGCC | 5 cut(s) | 631, 794, 855, 1092, 1454 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1024, 1054, 1170 |
| Bsp13I | TCCGGA | 1 cut(s) | 1306 |
| Bsp143I | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| Bsp19I | CCATGG | 1 cut(s) | 496 |
| BspACI | CCGC | 2 cut(s) | 1298, 1367 |
| BspANI | GGCC | 5 cut(s) | 631, 794, 855, 1092, 1454 |
| BspCNI | CTCAG | 2 cut(s) | 391, 1130 |
| BspEI | TCCGGA | 1 cut(s) | 1306 |
| BspFNI | CGCG | 2 cut(s) | 528, 603 |
| BspHI | TCATGA | 2 cut(s) | 342, 730 |
| BspLI | GGNNCC | 2 cut(s) | 454, 1179 |
| BspMI | ACCTGC | 1 cut(s) | 756 |
| BspOI | GCTAGC | 1 cut(s) | 419 |
| BspPI | GGATC | 2 cut(s) | 1172, 1185 |
| BsrDI | GCAATG | 1 cut(s) | 12 |
| BsrFI | RCCGGY | 1 cut(s) | 1202 |
| BsrI | ACTGG | 1 cut(s) | 1021 |
| BssAI | RCCGGY | 1 cut(s) | 1202 |
| BssECI | CCNNGG | 3 cut(s) | 18, 496, 1150 |
| BssMI | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| BssT1I | CCWWGG | 2 cut(s) | 18, 496 |
| Bst2UI | CCWGG | 2 cut(s) | 1089, 1094 |
| Bst4CI | ACNGT | 5 cut(s) | 114, 397, 658, 1141, 1338 |
| Bst6I | CTCTTC | 2 cut(s) | 243, 692 |
| BstC8I | GCNNGC | 3 cut(s) | 417, 753, 1300 |
| BstDEI | CTNAG | 4 cut(s) | 378, 411, 1117, 1395 |
| BstDSI | CCRYGG | 1 cut(s) | 496 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 956 |
| BstF5I | GGATG | 7 cut(s) | 247, 319, 817, 822, 856, 892, 1137 |
| BstFNI | CGCG | 2 cut(s) | 528, 603 |
| BstHHI | GCGC | 1 cut(s) | 528 |
| BstKTI | GATC | 6 cut(s) | 730, 847, 993, 1012, 1180, 1444 |
| BstMAI | GTCTC | 2 cut(s) | 248, 702 |
| BstMBI | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1460 |
| BstNI | CCWGG | 2 cut(s) | 1089, 1094 |
| BstNSI | RCATGY | 1 cut(s) | 621 |
| BstSCI | CCNGG | 5 cut(s) | 149, 1087, 1092, 1150, 1449 |
| BstSLI | GKGCMC | 2 cut(s) | 1024, 1170 |
| BstUI | CGCG | 2 cut(s) | 528, 603 |
| BstV1I | GCAGC | 3 cut(s) | 16, 217, 300 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 2 cut(s) | 844, 1177 |
| BstYI | RGATCY | 2 cut(s) | 844, 1177 |
| BsuRI | GGCC | 5 cut(s) | 631, 794, 855, 1092, 1454 |
| BtgI | CCRYGG | 1 cut(s) | 496 |
| BtgZI | GCGATG | 2 cut(s) | 618, 911 |
| BtsCI | GGATG | 7 cut(s) | 247, 319, 817, 822, 856, 892, 1137 |
| BtsIMutI | CAGTG | 1 cut(s) | 1014 |
| BveI | ACCTGC | 1 cut(s) | 756 |
| Cac8I | GCNNGC | 3 cut(s) | 417, 753, 1300 |
| CciI | TCATGA | 2 cut(s) | 342, 730 |
| CfoI | GCGC | 1 cut(s) | 528 |
| Cfr10I | RCCGGY | 1 cut(s) | 1202 |
| Cfr13I | GGNCC | 3 cut(s) | 792, 1447, 1452 |
| CspAI | ACCGGT | 1 cut(s) | 1202 |
| CviAII | CATG | 6 cut(s) | 343, 497, 618, 731, 1174, 1354 |
| DdeI | CTNAG | 4 cut(s) | 378, 411, 1117, 1395 |
| DpnI | GATC | 6 cut(s) | 729, 846, 992, 1011, 1179, 1443 |
| DpnII | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| EaeI | YGGCCR | 2 cut(s) | 853, 1090 |
| Eam1104I | CTCTTC | 2 cut(s) | 243, 692 |
| EarI | CTCTTC | 2 cut(s) | 243, 692 |
| Ecl136II | GAGCTC | 1 cut(s) | 1052 |
| Eco130I | CCWWGG | 2 cut(s) | 18, 496 |
| Eco24I | GRGCYC | 1 cut(s) | 1054 |
| Eco32I | GATATC | 1 cut(s) | 918 |
| Eco47I | GGWCC | 1 cut(s) | 1447 |
| Eco53kI | GAGCTC | 1 cut(s) | 1052 |
| EcoICRI | GAGCTC | 1 cut(s) | 1052 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 956 |
| EcoRII | CCWGG | 2 cut(s) | 1087, 1092 |
| EcoRV | GATATC | 1 cut(s) | 918 |
| EcoT14I | CCWWGG | 2 cut(s) | 18, 496 |
| EcoT22I | ATGCAT | 1 cut(s) | 1350 |
| EcoT38I | GRGCYC | 1 cut(s) | 1054 |
| ErhI | CCWWGG | 2 cut(s) | 18, 496 |
| FaeI | CATG | 6 cut(s) | 346, 500, 621, 734, 1177, 1357 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 16, 48, 203, 235 |
| FatI | CATG | 6 cut(s) | 342, 496, 617, 730, 1173, 1353 |
| FauI | CCCGC | 1 cut(s) | 1291 |
| FbaI | TGATCA | 3 cut(s) | 727, 1009, 1441 |
| FblI | GTMKAC | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 3 cut(s) | 30, 231, 289 |
| FokI | GGATG | 7 cut(s) | 254, 326, 809, 824, 843, 899, 1144 |
| FriOI | GRGCYC | 1 cut(s) | 1054 |
| Fsp4HI | GCNGC | 3 cut(s) | 30, 231, 289 |
| FspBI | CTAG | 5 cut(s) | 195, 416, 1061, 1103, 1492 |
| GlaI | GCGC | 1 cut(s) | 527 |
| GluI | GCNGC | 3 cut(s) | 30, 231, 289 |
| HaeIII | GGCC | 5 cut(s) | 631, 794, 855, 1092, 1454 |
| HapII | CCGG | 5 cut(s) | 151, 1152, 1203, 1307, 1450 |
| HhaI | GCGC | 1 cut(s) | 528 |
| Hin1II | CATG | 6 cut(s) | 346, 500, 621, 734, 1177, 1357 |
| Hin6I | GCGC | 1 cut(s) | 526 |
| HinP1I | GCGC | 1 cut(s) | 526 |
| HincII | GTYRAC | 2 cut(s) | 85, 1137 |
| HindII | GTYRAC | 2 cut(s) | 85, 1137 |
| HindIII | AAGCTT | 1 cut(s) | 173 |
| HinfI | GANTC | 4 cut(s) | 92, 407, 1194, 1229 |
| HpaII | CCGG | 5 cut(s) | 151, 1152, 1203, 1307, 1450 |
| HphI | GGTGA | 5 cut(s) | 529, 811, 1166, 1192, 1217 |
| Hpy166II | GTNNAC | 9 cut(s) | 85, 335, 819, 1022, 1137, 1147, 1168, 1225, 1334 |
| Hpy188I | TCNGA | 2 cut(s) | 372, 1238 |
| Hpy188III | TCNNGA | 7 cut(s) | 132, 205, 220, 272, 343, 731, 1307 |
| Hpy8I | GTNNAC | 9 cut(s) | 85, 335, 819, 1022, 1137, 1147, 1168, 1225, 1334 |
| HpyAV | CCTTC | 5 cut(s) | 665, 749, 859, 904, 1006 |
| HpyCH4III | ACNGT | 5 cut(s) | 114, 397, 658, 1141, 1338 |
| HpyCH4V | TGCA | 7 cut(s) | 233, 299, 608, 1022, 1168, 1250, 1348 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1460 |
| HpyF3I | CTNAG | 4 cut(s) | 378, 411, 1117, 1395 |
| Hsp92II | CATG | 6 cut(s) | 346, 500, 621, 734, 1177, 1357 |
| HspAI | GCGC | 1 cut(s) | 526 |
| Kpn2I | TCCGGA | 1 cut(s) | 1306 |
| Ksp22I | TGATCA | 3 cut(s) | 727, 1009, 1441 |
| Kzo9I | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| LmnI | GCTCC | 1 cut(s) | 1309 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 217, 300 |
| LweI | GCATC | 4 cut(s) | 308, 547, 595, 969 |
| MaeI | CTAG | 5 cut(s) | 195, 416, 1061, 1103, 1492 |
| MaeIII | GTNAC | 1 cut(s) | 535 |
| MalI | GATC | 6 cut(s) | 729, 846, 992, 1011, 1179, 1443 |
| MboI | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| MfeI | CAATTG | 2 cut(s) | 609, 1313 |
| MflI | RGATCY | 2 cut(s) | 844, 1177 |
| MhlI | GDGCHC | 3 cut(s) | 1024, 1054, 1170 |
| MlsI | TGGCCA | 1 cut(s) | 1092 |
| MluCI | AATT | 9 cut(s) | 281, 293, 353, 424, 609, 687, 1291, 1313, 1478 |
| MluNI | TGGCCA | 1 cut(s) | 1092 |
| MlyI | GAGTC | 2 cut(s) | 416, 1188 |
| MmeI | TCCRAC | 3 cut(s) | 36, 384, 1064 |
| Mox20I | TGGCCA | 1 cut(s) | 1092 |
| Mph1103I | ATGCAT | 1 cut(s) | 1350 |
| MroI | TCCGGA | 1 cut(s) | 1306 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MscI | TGGCCA | 1 cut(s) | 1092 |
| MseI | TTAA | 4 cut(s) | 48, 215, 806, 1184 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1017, 1027, 1389 |
| Msp20I | TGGCCA | 1 cut(s) | 1092 |
| MspI | CCGG | 5 cut(s) | 151, 1152, 1203, 1307, 1450 |
| MspR9I | CCNGG | 5 cut(s) | 151, 1089, 1094, 1152, 1451 |
| MunI | CAATTG | 2 cut(s) | 609, 1313 |
| Mva1269I | GAATGC | 1 cut(s) | 1302 |
| MvaI | CCWGG | 2 cut(s) | 1089, 1094 |
| MvnI | CGCG | 2 cut(s) | 528, 603 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1460 |
| NciI | CCSGG | 3 cut(s) | 151, 1152, 1451 |
| NcoI | CCATGG | 1 cut(s) | 496 |
| NdeII | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| NheI | GCTAGC | 1 cut(s) | 415 |
| NlaIII | CATG | 6 cut(s) | 346, 500, 621, 734, 1177, 1357 |
| NlaIV | GGNNCC | 2 cut(s) | 454, 1179 |
| NmeAIII | GCCGAG | 1 cut(s) | 1480 |
| NmuCI | GTSAC | 1 cut(s) | 535 |
| NsiI | ATGCAT | 1 cut(s) | 1350 |
| NspI | RCATGY | 1 cut(s) | 621 |
| OliI | CACNNNNGTG | 2 cut(s) | 1017, 1027 |
| PagI | TCATGA | 2 cut(s) | 342, 730 |
| PctI | GAATGC | 1 cut(s) | 1302 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 2 cut(s) | 92, 1229 |
| PinAI | ACCGGT | 1 cut(s) | 1202 |
| PkrI | GCNGC | 3 cut(s) | 31, 232, 290 |
| PleI | GAGTC | 2 cut(s) | 415, 1188 |
| PpsI | GAGTC | 2 cut(s) | 415, 1188 |
| Psp124BI | GAGCTC | 1 cut(s) | 1054 |
| Psp6I | CCWGG | 2 cut(s) | 1087, 1092 |
| PspGI | CCWGG | 2 cut(s) | 1087, 1092 |
| PspN4I | GGNNCC | 2 cut(s) | 454, 1179 |
| PspPI | GGNCC | 3 cut(s) | 792, 1447, 1452 |
| PsuI | RGATCY | 2 cut(s) | 844, 1177 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1017, 1027, 1389 |
| SacI | GAGCTC | 1 cut(s) | 1054 |
| SaqAI | TTAA | 4 cut(s) | 48, 215, 806, 1184 |
| SatI | GCNGC | 3 cut(s) | 30, 231, 289 |
| Sau3AI | GATC | 6 cut(s) | 727, 844, 990, 1009, 1177, 1441 |
| Sau96I | GGNCC | 3 cut(s) | 792, 1447, 1452 |
| SchI | GAGTC | 2 cut(s) | 416, 1188 |
| ScrFI | CCNGG | 5 cut(s) | 151, 1089, 1094, 1152, 1451 |
| SduI | GDGCHC | 3 cut(s) | 1024, 1054, 1170 |
| SfaNI | GCATC | 4 cut(s) | 308, 547, 595, 969 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1202 |
| SinI | GGWCC | 1 cut(s) | 1447 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1017, 1027, 1389 |
| Sse9I | AATT | 9 cut(s) | 281, 293, 353, 424, 609, 687, 1291, 1313, 1478 |
| SsiI | CCGC | 2 cut(s) | 1298, 1367 |
| SspMI | CTAG | 5 cut(s) | 195, 416, 1061, 1103, 1492 |
| SstI | GAGCTC | 1 cut(s) | 1054 |
| StyD4I | CCNGG | 5 cut(s) | 149, 1087, 1092, 1150, 1449 |
| StyI | CCWWGG | 2 cut(s) | 18, 496 |
| TaaI | ACNGT | 5 cut(s) | 114, 397, 658, 1141, 1338 |
| TaqI | TCGA | 1 cut(s) | 920 |
| TasI | AATT | 9 cut(s) | 281, 293, 353, 424, 609, 687, 1291, 1313, 1478 |
| TfiI | GAWTC | 2 cut(s) | 92, 1229 |
| Tru1I | TTAA | 4 cut(s) | 48, 215, 806, 1184 |
| Tru9I | TTAA | 4 cut(s) | 48, 215, 806, 1184 |
| TscAI | CASTG | 1 cut(s) | 1021 |
| TseFI | GTSAC | 1 cut(s) | 535 |
| TseI | GCWGC | 3 cut(s) | 29, 230, 288 |
| Tsp45I | GTSAC | 1 cut(s) | 535 |
| TspDTI | ATGAA | 8 cut(s) | 84, 185, 359, 417, 923, 988, 1162, 1370 |
| TspRI | CASTG | 1 cut(s) | 1021 |
| VneI | GTGCAC | 2 cut(s) | 1020, 1166 |
| VpaK11BI | GGWCC | 1 cut(s) | 1447 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 956 |
| XapI | RAATTY | 3 cut(s) | 293, 353, 424 |
| XceI | RCATGY | 1 cut(s) | 621 |
| XmiI | GTMKAC | 1 cut(s) | 334 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 5 cut(s) | 195, 416, 1061, 1103, 1492 |
| Zsp2I | ATGCAT | 1 cut(s) | 1350 |