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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 930 |
| Acc16I | TGCGCA | 1 cut(s) | 479 |
| Acc36I | ACCTGC | 1 cut(s) | 147 |
| Acc65I | GGTACC | 1 cut(s) | 903 |
| AccB1I | GGYRCC | 2 cut(s) | 706, 903 |
| AciI | CCGC | 2 cut(s) | 1119, 1287 |
| AclWI | GGATC | 2 cut(s) | 425, 438 |
| AcoI | YGGCCR | 1 cut(s) | 696 |
| AcsI | RAATTY | 3 cut(s) | 78, 686, 1246 |
| AcuI | CTGAAG | 1 cut(s) | 819 |
| AfaI | GTAC | 3 cut(s) | 896, 905, 1292 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 235 |
| AflIII | ACRYGT | 1 cut(s) | 1335 |
| AgsI | TTSAA | 9 cut(s) | 95, 254, 392, 545, 686, 730, 763, 922, 1362 |
| AjnI | CCWGG | 1 cut(s) | 1042 |
| AluBI | AGCT | 5 cut(s) | 8, 221, 356, 722, 1373 |
| AluI | AGCT | 5 cut(s) | 8, 221, 356, 722, 1373 |
| Alw26I | GTCTC | 1 cut(s) | 1350 |
| AlwI | GGATC | 2 cut(s) | 425, 438 |
| Ama87I | CYCGRG | 2 cut(s) | 173, 1072 |
| AoxI | GGCC | 3 cut(s) | 581, 696, 1005 |
| ApoI | RAATTY | 3 cut(s) | 78, 686, 1246 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 444 |
| Asp718I | GGTACC | 1 cut(s) | 903 |
| AspLEI | GCGC | 1 cut(s) | 480 |
| AspS9I | GGNCC | 1 cut(s) | 1006 |
| AsuC2I | CCSGG | 2 cut(s) | 174, 175 |
| AsuHPI | GGTGA | 1 cut(s) | 761 |
| AvaI | CYCGRG | 2 cut(s) | 173, 1072 |
| BalI | TGGCCA | 1 cut(s) | 698 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BanI | GGYRCC | 2 cut(s) | 706, 903 |
| BccI | CCATC | 5 cut(s) | 122, 461, 494, 718, 761 |
| BciT130I | CCWGG | 1 cut(s) | 1044 |
| BclI | TGATCA | 1 cut(s) | 913 |
| BcnI | CCSGG | 2 cut(s) | 174, 175 |
| BcoDI | GTCTC | 1 cut(s) | 1350 |
| BfaI | CTAG | 2 cut(s) | 461, 593 |
| BfmI | CTRYAG | 2 cut(s) | 606, 1155 |
| BfuAI | ACCTGC | 1 cut(s) | 147 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 704 |
| Bme1390I | CCNGG | 3 cut(s) | 174, 175, 1044 |
| BmeT110I | CYCGRG | 2 cut(s) | 173, 1072 |
| BmgT120I | GGNCC | 1 cut(s) | 1006 |
| BmiI | GGNNCC | 6 cut(s) | 285, 432, 708, 795, 905, 1117 |
| BmrFI | CCNGG | 3 cut(s) | 174, 175, 1044 |
| BmsI | GCATC | 3 cut(s) | 315, 337, 745 |
| BpmI | CTGGAG | 1 cut(s) | 1127 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| BpuEI | CTTGAG | 2 cut(s) | 230, 521 |
| BpuMI | CCSGG | 2 cut(s) | 174, 175 |
| BsaBI | GATNNNNATC | 2 cut(s) | 275, 1172 |
| BsaJI | CCNNGG | 4 cut(s) | 173, 624, 1043, 1353 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1274, 1304 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 235 |
| Bse3DI | GCAATG | 2 cut(s) | 105, 885 |
| Bse8I | GATNNNNATC | 2 cut(s) | 275, 1172 |
| BseBI | CCWGG | 1 cut(s) | 1044 |
| BseDI | CCNNGG | 4 cut(s) | 173, 624, 1043, 1353 |
| BseGI | GGATG | 4 cut(s) | 472, 760, 1092, 1173 |
| BseJI | GATNNNNATC | 2 cut(s) | 275, 1172 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BseMI | GCAATG | 2 cut(s) | 105, 885 |
| BseMII | CTCAG | 1 cut(s) | 74 |
| BseRI | GAGGAG | 2 cut(s) | 248, 518 |
| BshFI | GGCC | 3 cut(s) | 583, 698, 1007 |
| BshNI | GGYRCC | 2 cut(s) | 706, 903 |
| BsiHKCI | CYCGRG | 2 cut(s) | 173, 1072 |
| BsiSI | CCGG | 3 cut(s) | 174, 287, 1225 |
| BslFI | GGGAC | 2 cut(s) | 148, 156 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BsmAI | GTCTC | 1 cut(s) | 1350 |
| BsmFI | GGGAC | 2 cut(s) | 148, 156 |
| BsmI | GAATGC | 2 cut(s) | 758, 1257 |
| BsnI | GGCC | 3 cut(s) | 583, 698, 1007 |
| BsoBI | CYCGRG | 2 cut(s) | 173, 1072 |
| Bsp143I | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| BspACI | CCGC | 2 cut(s) | 1119, 1287 |
| BspANI | GGCC | 3 cut(s) | 583, 698, 1007 |
| BspCNI | CTCAG | 1 cut(s) | 75 |
| BspLI | GGNNCC | 6 cut(s) | 285, 432, 708, 795, 905, 1117 |
| BspMAI | CTGCAG | 1 cut(s) | 610 |
| BspMI | ACCTGC | 1 cut(s) | 147 |
| BspPI | GGATC | 2 cut(s) | 425, 438 |
| BspT107I | GGYRCC | 2 cut(s) | 706, 903 |
| BsrDI | GCAATG | 2 cut(s) | 105, 885 |
| BssECI | CCNNGG | 4 cut(s) | 173, 624, 1043, 1353 |
| BssMI | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| BssT1I | CCWWGG | 2 cut(s) | 624, 1353 |
| Bst2UI | CCWGG | 1 cut(s) | 1044 |
| Bst4CI | ACNGT | 3 cut(s) | 415, 550, 1000 |
| Bst6I | CTCTTC | 1 cut(s) | 663 |
| BstC8I | GCNNGC | 4 cut(s) | 558, 720, 859, 1255 |
| BstDEI | CTNAG | 3 cut(s) | 83, 357, 676 |
| BstF5I | GGATG | 4 cut(s) | 472, 760, 1092, 1173 |
| BstHHI | GCGC | 1 cut(s) | 480 |
| BstKTI | GATC | 4 cut(s) | 433, 916, 1081, 1105 |
| BstMAI | GTCTC | 1 cut(s) | 1350 |
| BstMBI | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 704 |
| BstNI | CCWGG | 1 cut(s) | 1044 |
| BstNSI | RCATGY | 1 cut(s) | 1339 |
| BstSCI | CCNGG | 3 cut(s) | 172, 173, 1042 |
| BstSFI | CTRYAG | 2 cut(s) | 606, 1155 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 418 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BsuRI | GGCC | 3 cut(s) | 583, 698, 1007 |
| BtsCI | GGATG | 4 cut(s) | 472, 760, 1092, 1173 |
| BtsI | GCAGTG | 1 cut(s) | 897 |
| BtsIMutI | CAGTG | 3 cut(s) | 411, 555, 897 |
| BveI | ACCTGC | 1 cut(s) | 147 |
| Cac8I | GCNNGC | 4 cut(s) | 558, 720, 859, 1255 |
| CfoI | GCGC | 1 cut(s) | 480 |
| Cfr13I | GGNCC | 1 cut(s) | 1006 |
| Cfr9I | CCCGGG | 1 cut(s) | 173 |
| CseI | GACGC | 1 cut(s) | 1155 |
| Csp6I | GTAC | 3 cut(s) | 895, 904, 1291 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 49, 84 |
| CviAII | CATG | 9 cut(s) | 118, 230, 449, 579, 862, 943, 1300, 1309, 1336 |
| CviQI | GTAC | 3 cut(s) | 895, 904, 1291 |
| DdeI | CTNAG | 3 cut(s) | 83, 357, 676 |
| DpnI | GATC | 4 cut(s) | 432, 915, 1080, 1104 |
| DpnII | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| EaeI | YGGCCR | 1 cut(s) | 696 |
| Eam1104I | CTCTTC | 1 cut(s) | 663 |
| EarI | CTCTTC | 1 cut(s) | 663 |
| Eco130I | CCWWGG | 2 cut(s) | 624, 1353 |
| Eco32I | GATATC | 2 cut(s) | 277, 1318 |
| Eco57I | CTGAAG | 1 cut(s) | 819 |
| Eco88I | CYCGRG | 2 cut(s) | 173, 1072 |
| EcoRII | CCWGG | 1 cut(s) | 1042 |
| EcoRV | GATATC | 2 cut(s) | 277, 1318 |
| EcoT14I | CCWWGG | 2 cut(s) | 624, 1353 |
| EcoT22I | ATGCAT | 2 cut(s) | 330, 760 |
| ErhI | CCWWGG | 2 cut(s) | 624, 1353 |
| FaeI | CATG | 9 cut(s) | 121, 233, 452, 582, 865, 946, 1303, 1312, 1339 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1011, 1043 |
| FaqI | GGGAC | 2 cut(s) | 148, 156 |
| FatI | CATG | 9 cut(s) | 117, 229, 448, 578, 861, 942, 1299, 1308, 1335 |
| FauI | CCCGC | 1 cut(s) | 1280 |
| FbaI | TGATCA | 1 cut(s) | 913 |
| FokI | GGATG | 4 cut(s) | 479, 767, 1099, 1180 |
| FspAI | RTGCGCAY | 1 cut(s) | 479 |
| FspBI | CTAG | 2 cut(s) | 461, 593 |
| FspI | TGCGCA | 1 cut(s) | 479 |
| GlaI | GCGC | 1 cut(s) | 479 |
| GsuI | CTGGAG | 1 cut(s) | 1127 |
| HaeIII | GGCC | 3 cut(s) | 583, 698, 1007 |
| HapII | CCGG | 3 cut(s) | 174, 287, 1225 |
| HgaI | GACGC | 1 cut(s) | 1155 |
| HhaI | GCGC | 1 cut(s) | 480 |
| Hin1II | CATG | 9 cut(s) | 121, 233, 452, 582, 865, 946, 1303, 1312, 1339 |
| Hin6I | GCGC | 1 cut(s) | 478 |
| HinP1I | GCGC | 1 cut(s) | 478 |
| HincII | GTYRAC | 3 cut(s) | 226, 958, 1092 |
| HindII | GTYRAC | 3 cut(s) | 226, 958, 1092 |
| HinfI | GANTC | 1 cut(s) | 1133 |
| HpaII | CCGG | 3 cut(s) | 174, 287, 1225 |
| HphI | GGTGA | 1 cut(s) | 761 |
| Hpy166II | GTNNAC | 5 cut(s) | 58, 226, 895, 958, 1092 |
| Hpy188I | TCNGA | 2 cut(s) | 84, 439 |
| Hpy188III | TCNNGA | 3 cut(s) | 209, 613, 1106 |
| Hpy8I | GTNNAC | 5 cut(s) | 58, 226, 895, 958, 1092 |
| HpyAV | CCTTC | 7 cut(s) | 146, 444, 859, 916, 972, 997, 1359 |
| HpyCH4III | ACNGT | 3 cut(s) | 415, 550, 1000 |
| HpyCH4IV | ACGT | 1 cut(s) | 1364 |
| HpyCH4V | TGCA | 7 cut(s) | 328, 369, 608, 758, 857, 885, 890 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 704 |
| HpyF3I | CTNAG | 3 cut(s) | 83, 357, 676 |
| HpySE526I | ACGT | 1 cut(s) | 1364 |
| Hsp92II | CATG | 9 cut(s) | 121, 233, 452, 582, 865, 946, 1303, 1312, 1339 |
| HspAI | GCGC | 1 cut(s) | 478 |
| KpnI | GGTACC | 1 cut(s) | 907 |
| Ksp22I | TGATCA | 1 cut(s) | 913 |
| Kzo9I | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| LmnI | GCTCC | 2 cut(s) | 283, 793 |
| LweI | GCATC | 3 cut(s) | 315, 337, 745 |
| MaeI | CTAG | 2 cut(s) | 461, 593 |
| MaeII | ACGT | 1 cut(s) | 1364 |
| MaeIII | GTNAC | 1 cut(s) | 1384 |
| MalI | GATC | 4 cut(s) | 432, 915, 1080, 1104 |
| MboI | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| MboII | GAAGA | 6 cut(s) | 59, 266, 655, 658, 680, 742 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MlsI | TGGCCA | 1 cut(s) | 698 |
| MluCI | AATT | 7 cut(s) | 78, 338, 540, 686, 701, 873, 1246 |
| MluNI | TGGCCA | 1 cut(s) | 698 |
| MlyI | GAGTC | 1 cut(s) | 1127 |
| MmeI | TCCRAC | 2 cut(s) | 24, 141 |
| Mox20I | TGGCCA | 1 cut(s) | 698 |
| Mph1103I | ATGCAT | 2 cut(s) | 330, 760 |
| MroXI | GAANNNNTTC | 1 cut(s) | 444 |
| MscI | TGGCCA | 1 cut(s) | 698 |
| MseI | TTAA | 2 cut(s) | 147, 341 |
| MslI | CAYNNNNRTG | 2 cut(s) | 416, 890 |
| Msp20I | TGGCCA | 1 cut(s) | 698 |
| MspA1I | CMGCKG | 1 cut(s) | 8 |
| MspI | CCGG | 3 cut(s) | 174, 287, 1225 |
| MspR9I | CCNGG | 3 cut(s) | 174, 175, 1044 |
| Mva1269I | GAATGC | 2 cut(s) | 758, 1257 |
| MvaI | CCWGG | 1 cut(s) | 1044 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 704 |
| NciI | CCSGG | 2 cut(s) | 174, 175 |
| NdeII | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| NlaIII | CATG | 9 cut(s) | 121, 233, 452, 582, 865, 946, 1303, 1312, 1339 |
| NlaIV | GGNNCC | 6 cut(s) | 285, 432, 708, 795, 905, 1117 |
| NmuCI | GTSAC | 1 cut(s) | 1384 |
| NsbI | TGCGCA | 1 cut(s) | 479 |
| NsiI | ATGCAT | 2 cut(s) | 330, 760 |
| NspI | RCATGY | 1 cut(s) | 1339 |
| PciI | ACATGT | 1 cut(s) | 1335 |
| PctI | GAATGC | 2 cut(s) | 758, 1257 |
| PdmI | GAANNNNTTC | 1 cut(s) | 444 |
| PleI | GAGTC | 1 cut(s) | 1127 |
| PpsI | GAGTC | 1 cut(s) | 1127 |
| PscI | ACATGT | 1 cut(s) | 1335 |
| PsiI | TTATAA | 1 cut(s) | 930 |
| Psp6I | CCWGG | 1 cut(s) | 1042 |
| PspGI | CCWGG | 1 cut(s) | 1042 |
| PspN4I | GGNNCC | 6 cut(s) | 285, 432, 708, 795, 905, 1117 |
| PspPI | GGNCC | 1 cut(s) | 1006 |
| PstI | CTGCAG | 1 cut(s) | 610 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| PvuII | CAGCTG | 1 cut(s) | 8 |
| RsaI | GTAC | 3 cut(s) | 896, 905, 1292 |
| RsaNI | GTAC | 3 cut(s) | 895, 904, 1291 |
| RseI | CAYNNNNRTG | 2 cut(s) | 416, 890 |
| SaqAI | TTAA | 2 cut(s) | 147, 341 |
| Sau3AI | GATC | 4 cut(s) | 430, 913, 1078, 1102 |
| Sau96I | GGNCC | 1 cut(s) | 1006 |
| SchI | GAGTC | 1 cut(s) | 1127 |
| ScrFI | CCNGG | 3 cut(s) | 174, 175, 1044 |
| SfaNI | GCATC | 3 cut(s) | 315, 337, 745 |
| SfcI | CTRYAG | 2 cut(s) | 606, 1155 |
| SmaI | CCCGGG | 1 cut(s) | 175 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 416, 890 |
| SmlI | CTYRAG | 2 cut(s) | 209, 500 |
| SmoI | CTYRAG | 2 cut(s) | 209, 500 |
| Sse9I | AATT | 7 cut(s) | 78, 338, 540, 686, 701, 873, 1246 |
| SsiI | CCGC | 2 cut(s) | 1119, 1287 |
| SspMI | CTAG | 2 cut(s) | 461, 593 |
| StyD4I | CCNGG | 3 cut(s) | 172, 173, 1042 |
| StyI | CCWWGG | 2 cut(s) | 624, 1353 |
| TaaI | ACNGT | 3 cut(s) | 415, 550, 1000 |
| TaiI | ACGT | 1 cut(s) | 1367 |
| TasI | AATT | 7 cut(s) | 78, 338, 540, 686, 701, 873, 1246 |
| Tru1I | TTAA | 2 cut(s) | 147, 341 |
| Tru9I | TTAA | 2 cut(s) | 147, 341 |
| TscAI | CASTG | 3 cut(s) | 418, 555, 897 |
| TseFI | GTSAC | 1 cut(s) | 1384 |
| Tsp45I | GTSAC | 1 cut(s) | 1384 |
| TspDTI | ATGAA | 5 cut(s) | 437, 552, 714, 878, 1045 |
| TspMI | CCCGGG | 1 cut(s) | 173 |
| TspRI | CASTG | 3 cut(s) | 418, 555, 897 |
| XapI | RAATTY | 3 cut(s) | 78, 686, 1246 |
| XceI | RCATGY | 1 cut(s) | 1339 |
| XmaI | CCCGGG | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 444 |
| XspI | CTAG | 2 cut(s) | 461, 593 |
| Zsp2I | ATGCAT | 2 cut(s) | 330, 760 |