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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 222 |
| AciI | CCGC | 1 cut(s) | 171 |
| AclWI | GGATC | 1 cut(s) | 233 |
| AcsI | RAATTY | 2 cut(s) | 35, 355 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 222 |
| AgsI | TTSAA | 5 cut(s) | 40, 57, 97, 259, 311 |
| AluBI | AGCT | 2 cut(s) | 146, 303 |
| AluI | AGCT | 2 cut(s) | 146, 303 |
| Alw26I | GTCTC | 1 cut(s) | 48 |
| AlwI | GGATC | 1 cut(s) | 233 |
| Ama87I | CYCGRG | 1 cut(s) | 86 |
| AoxI | GGCC | 2 cut(s) | 213, 441 |
| ApeKI | GCWGC | 1 cut(s) | 17 |
| ApoI | RAATTY | 2 cut(s) | 35, 355 |
| AspS9I | GGNCC | 1 cut(s) | 213 |
| AsuHPI | GGTGA | 1 cut(s) | 206 |
| AvaI | CYCGRG | 1 cut(s) | 86 |
| BbvCI | CCTCAGC | 1 cut(s) | 183 |
| BbvI | GCAGC | 1 cut(s) | 4 |
| BccI | CCATC | 3 cut(s) | 184, 242, 468 |
| BceAI | ACGGC | 1 cut(s) | 251 |
| BciVI | GTATCC | 1 cut(s) | 111 |
| BclI | TGATCA | 1 cut(s) | 421 |
| BcoDI | GTCTC | 1 cut(s) | 48 |
| BfuI | GTATCC | 1 cut(s) | 111 |
| BisI | GCNGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 1 cut(s) | 19 |
| BmeT110I | CYCGRG | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 1 cut(s) | 213 |
| BoxI | GACNNNNGTC | 1 cut(s) | 238 |
| BpmI | CTGGAG | 1 cut(s) | 90 |
| Bpu10I | CCTNAGC | 1 cut(s) | 183 |
| BsaBI | GATNNNNATC | 2 cut(s) | 114, 420 |
| BsaJI | CCNNGG | 4 cut(s) | 87, 243, 444, 469 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 222 |
| Bse1I | ACTGG | 1 cut(s) | 143 |
| Bse3DI | GCAATG | 1 cut(s) | 481 |
| Bse8I | GATNNNNATC | 2 cut(s) | 114, 420 |
| BseDI | CCNNGG | 4 cut(s) | 87, 243, 444, 469 |
| BseGI | GGATG | 3 cut(s) | 253, 404, 454 |
| BseJI | GATNNNNATC | 2 cut(s) | 114, 420 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BseMI | GCAATG | 1 cut(s) | 481 |
| BseMII | CTCAG | 1 cut(s) | 174 |
| BseNI | ACTGG | 1 cut(s) | 143 |
| BseRI | GAGGAG | 1 cut(s) | 200 |
| BseXI | GCAGC | 1 cut(s) | 4 |
| BshFI | GGCC | 2 cut(s) | 215, 443 |
| BsiHKCI | CYCGRG | 1 cut(s) | 86 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BsmAI | GTCTC | 1 cut(s) | 48 |
| BsmI | GAATGC | 1 cut(s) | 173 |
| BsnI | GGCC | 2 cut(s) | 215, 443 |
| BsoBI | CYCGRG | 1 cut(s) | 86 |
| Bsp143I | GATC | 3 cut(s) | 133, 225, 421 |
| BspACI | CCGC | 1 cut(s) | 171 |
| BspANI | GGCC | 2 cut(s) | 215, 443 |
| BspCNI | CTCAG | 1 cut(s) | 175 |
| BspHI | TCATGA | 1 cut(s) | 424 |
| BspPI | GGATC | 1 cut(s) | 233 |
| BsrDI | GCAATG | 1 cut(s) | 481 |
| BsrI | ACTGG | 1 cut(s) | 143 |
| BssECI | CCNNGG | 4 cut(s) | 87, 243, 444, 469 |
| BssMI | GATC | 3 cut(s) | 133, 225, 421 |
| BssT1I | CCWWGG | 3 cut(s) | 243, 444, 469 |
| BstC8I | GCNNGC | 2 cut(s) | 22, 171 |
| BstDEI | CTNAG | 2 cut(s) | 183, 483 |
| BstF5I | GGATG | 3 cut(s) | 253, 404, 454 |
| BstKTI | GATC | 3 cut(s) | 136, 228, 424 |
| BstMAI | GTCTC | 1 cut(s) | 48 |
| BstMBI | GATC | 3 cut(s) | 133, 225, 421 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 179 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 238 |
| BstV1I | GCAGC | 1 cut(s) | 4 |
| BsuI | GTATCC | 1 cut(s) | 111 |
| BsuRI | GGCC | 2 cut(s) | 215, 443 |
| BtsCI | GGATG | 3 cut(s) | 253, 404, 454 |
| BtsIMutI | CAGTG | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 2 cut(s) | 22, 171 |
| CciI | TCATGA | 1 cut(s) | 424 |
| Cfr13I | GGNCC | 1 cut(s) | 213 |
| CviAII | CATG | 2 cut(s) | 366, 425 |
| CviJI | RGCY | 6 cut(s) | 146, 182, 215, 303, 362, 443 |
| CviKI_1 | RGCY | 6 cut(s) | 146, 182, 215, 303, 362, 443 |
| DdeI | CTNAG | 2 cut(s) | 183, 483 |
| DpnI | GATC | 3 cut(s) | 135, 227, 423 |
| DpnII | GATC | 3 cut(s) | 133, 225, 421 |
| Eco130I | CCWWGG | 3 cut(s) | 243, 444, 469 |
| Eco88I | CYCGRG | 1 cut(s) | 86 |
| EcoRI | GAATTC | 1 cut(s) | 35 |
| EcoT14I | CCWWGG | 3 cut(s) | 243, 444, 469 |
| ErhI | CCWWGG | 3 cut(s) | 243, 444, 469 |
| FaeI | CATG | 2 cut(s) | 369, 428 |
| FaiI | YATR | 6 cut(s) | 125, 295, 306, 367, 381, 426 |
| FatI | CATG | 2 cut(s) | 365, 424 |
| FauI | CCCGC | 1 cut(s) | 178 |
| FbaI | TGATCA | 1 cut(s) | 421 |
| Fnu4HI | GCNGC | 1 cut(s) | 18 |
| FokI | GGATG | 3 cut(s) | 260, 391, 461 |
| Fsp4HI | GCNGC | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 18 |
| GsuI | CTGGAG | 1 cut(s) | 90 |
| HaeIII | GGCC | 2 cut(s) | 215, 443 |
| Hin1II | CATG | 2 cut(s) | 369, 428 |
| HinfI | GANTC | 1 cut(s) | 11 |
| HphI | GGTGA | 1 cut(s) | 206 |
| Hpy188I | TCNGA | 1 cut(s) | 337 |
| Hpy188III | TCNNGA | 4 cut(s) | 45, 107, 223, 425 |
| HpyAV | CCTTC | 1 cut(s) | 424 |
| HpyCH4V | TGCA | 2 cut(s) | 20, 297 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 179 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 483 |
| Hsp92II | CATG | 2 cut(s) | 369, 428 |
| Ksp22I | TGATCA | 1 cut(s) | 421 |
| Kzo9I | GATC | 3 cut(s) | 133, 225, 421 |
| LpnPI | CCDG | 3 cut(s) | 120, 124, 208 |
| Lsp1109I | GCAGC | 1 cut(s) | 4 |
| MalI | GATC | 3 cut(s) | 135, 227, 423 |
| MboI | GATC | 3 cut(s) | 133, 225, 421 |
| MboII | GAAGA | 1 cut(s) | 338 |
| MluCI | AATT | 2 cut(s) | 35, 355 |
| MlyI | GAGTC | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 315 |
| MnlI | CCTC | 5 cut(s) | 24, 82, 114, 178, 193 |
| Mva1269I | GAATGC | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 179 |
| NdeII | GATC | 3 cut(s) | 133, 225, 421 |
| NlaIII | CATG | 2 cut(s) | 369, 428 |
| PagI | TCATGA | 1 cut(s) | 424 |
| PctI | GAATGC | 1 cut(s) | 173 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 222 |
| PkrI | GCNGC | 1 cut(s) | 19 |
| PleI | GAGTC | 1 cut(s) | 5 |
| PpsI | GAGTC | 1 cut(s) | 5 |
| PshAI | GACNNNNGTC | 1 cut(s) | 238 |
| PspPI | GGNCC | 1 cut(s) | 213 |
| SatI | GCNGC | 1 cut(s) | 18 |
| Sau3AI | GATC | 3 cut(s) | 133, 225, 421 |
| Sau96I | GGNCC | 1 cut(s) | 213 |
| SchI | GAGTC | 1 cut(s) | 5 |
| SetI | ASST | 3 cut(s) | 148, 305, 335 |
| Sse9I | AATT | 2 cut(s) | 35, 355 |
| SsiI | CCGC | 1 cut(s) | 171 |
| StyI | CCWWGG | 3 cut(s) | 243, 444, 469 |
| TaqI | TCGA | 1 cut(s) | 46 |
| TasI | AATT | 2 cut(s) | 35, 355 |
| TscAI | CASTG | 1 cut(s) | 143 |
| TseI | GCWGC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 3 cut(s) | 112, 279, 354 |
| TspRI | CASTG | 1 cut(s) | 143 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 222 |
| XapI | RAATTY | 2 cut(s) | 35, 355 |