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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 454 |
| AccII | CGCG | 1 cut(s) | 318 |
| AciI | CCGC | 2 cut(s) | 159, 188 |
| AcoI | YGGCCR | 1 cut(s) | 419 |
| AcyI | GRCGYC | 1 cut(s) | 396 |
| AfaI | GTAC | 1 cut(s) | 406 |
| AgsI | TTSAA | 2 cut(s) | 71, 254 |
| AjnI | CCWGG | 3 cut(s) | 416, 429, 442 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 17, 49 |
| AluBI | AGCT | 3 cut(s) | 13, 56, 280 |
| AluI | AGCT | 3 cut(s) | 13, 56, 280 |
| Alw21I | GWGCWC | 1 cut(s) | 15 |
| Alw26I | GTCTC | 3 cut(s) | 129, 170, 325 |
| AoxI | GGCC | 1 cut(s) | 419 |
| ApeKI | GCWGC | 2 cut(s) | 53, 185 |
| AspLEI | GCGC | 1 cut(s) | 318 |
| AsuHPI | GGTGA | 1 cut(s) | 20 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 396, 429 |
| BalI | TGGCCA | 1 cut(s) | 421 |
| BanI | GGYRCC | 1 cut(s) | 454 |
| BanII | GRGCYC | 1 cut(s) | 15 |
| Bbv12I | GWGCWC | 1 cut(s) | 15 |
| BbvI | GCAGC | 2 cut(s) | 65, 172 |
| BciT130I | CCWGG | 3 cut(s) | 418, 431, 444 |
| BcoDI | GTCTC | 3 cut(s) | 129, 170, 325 |
| BfmI | CTRYAG | 1 cut(s) | 237 |
| BglII | AGATCT | 1 cut(s) | 169 |
| BisI | GCNGC | 2 cut(s) | 54, 186 |
| BlsI | GCNGC | 2 cut(s) | 55, 187 |
| Bme1390I | CCNGG | 3 cut(s) | 418, 431, 444 |
| BmiI | GGNNCC | 3 cut(s) | 98, 147, 456 |
| BmrFI | CCNGG | 3 cut(s) | 418, 431, 444 |
| BmsI | GCATC | 3 cut(s) | 40, 275, 337 |
| BpmI | CTGGAG | 2 cut(s) | 194, 465 |
| BsaHI | GRCGYC | 1 cut(s) | 396 |
| BsaJI | CCNNGG | 1 cut(s) | 442 |
| Bse1I | ACTGG | 2 cut(s) | 210, 365 |
| BseBI | CCWGG | 3 cut(s) | 418, 431, 444 |
| BseDI | CCNNGG | 1 cut(s) | 442 |
| BseGI | GGATG | 1 cut(s) | 379 |
| BseMII | CTCAG | 1 cut(s) | 336 |
| BseNI | ACTGG | 2 cut(s) | 210, 365 |
| BseRI | GAGGAG | 2 cut(s) | 137, 140 |
| BseXI | GCAGC | 2 cut(s) | 65, 172 |
| Bsh1236I | CGCG | 1 cut(s) | 318 |
| BshFI | GGCC | 1 cut(s) | 421 |
| BshNI | GGYRCC | 1 cut(s) | 454 |
| BsiHKAI | GWGCWC | 1 cut(s) | 15 |
| BsmAI | GTCTC | 3 cut(s) | 129, 170, 325 |
| BsmBI | CGTCTC | 2 cut(s) | 170, 325 |
| BsnI | GGCC | 1 cut(s) | 421 |
| Bsp1286I | GDGCHC | 1 cut(s) | 15 |
| Bsp143I | GATC | 2 cut(s) | 169, 274 |
| BspACI | CCGC | 2 cut(s) | 159, 188 |
| BspANI | GGCC | 1 cut(s) | 421 |
| BspCNI | CTCAG | 1 cut(s) | 335 |
| BspFNI | CGCG | 1 cut(s) | 318 |
| BspLI | GGNNCC | 3 cut(s) | 98, 147, 456 |
| BspT107I | GGYRCC | 1 cut(s) | 454 |
| BsrI | ACTGG | 2 cut(s) | 210, 365 |
| BssECI | CCNNGG | 1 cut(s) | 442 |
| BssMI | GATC | 2 cut(s) | 169, 274 |
| BssNI | GRCGYC | 1 cut(s) | 396 |
| Bst2UI | CCWGG | 3 cut(s) | 418, 431, 444 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 388 |
| Bst6I | CTCTTC | 1 cut(s) | 23 |
| BstACI | GRCGYC | 1 cut(s) | 396 |
| BstDEI | CTNAG | 1 cut(s) | 322 |
| BstF5I | GGATG | 1 cut(s) | 379 |
| BstFNI | CGCG | 1 cut(s) | 318 |
| BstHHI | GCGC | 1 cut(s) | 318 |
| BstKTI | GATC | 2 cut(s) | 172, 277 |
| BstMAI | GTCTC | 3 cut(s) | 129, 170, 325 |
| BstMBI | GATC | 2 cut(s) | 169, 274 |
| BstNI | CCWGG | 3 cut(s) | 418, 431, 444 |
| BstSCI | CCNGG | 3 cut(s) | 416, 429, 442 |
| BstSFI | CTRYAG | 1 cut(s) | 237 |
| BstUI | CGCG | 1 cut(s) | 318 |
| BstV1I | GCAGC | 2 cut(s) | 65, 172 |
| BstX2I | RGATCY | 1 cut(s) | 169 |
| BstYI | RGATCY | 1 cut(s) | 169 |
| BsuRI | GGCC | 1 cut(s) | 421 |
| BtsCI | GGATG | 1 cut(s) | 379 |
| BtsI | GCAGTG | 1 cut(s) | 27 |
| BtsIMutI | CAGTG | 3 cut(s) | 27, 372, 384 |
| CfoI | GCGC | 1 cut(s) | 318 |
| CseI | GACGC | 2 cut(s) | 307, 404 |
| CsiI | ACCWGGT | 1 cut(s) | 429 |
| Csp6I | GTAC | 1 cut(s) | 405 |
| CviAII | CATG | 3 cut(s) | 80, 142, 287 |
| CviJI | RGCY | 7 cut(s) | 13, 56, 146, 280, 335, 421, 467 |
| CviKI_1 | RGCY | 7 cut(s) | 13, 56, 146, 280, 335, 421, 467 |
| CviQI | GTAC | 1 cut(s) | 405 |
| DdeI | CTNAG | 1 cut(s) | 322 |
| DpnI | GATC | 2 cut(s) | 171, 276 |
| DpnII | GATC | 2 cut(s) | 169, 274 |
| DraI | TTTAAA | 1 cut(s) | 42 |
| EaeI | YGGCCR | 1 cut(s) | 419 |
| Eam1104I | CTCTTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 1 cut(s) | 23 |
| Ecl136II | GAGCTC | 1 cut(s) | 13 |
| Eco24I | GRGCYC | 1 cut(s) | 15 |
| Eco53kI | GAGCTC | 1 cut(s) | 13 |
| EcoICRI | GAGCTC | 1 cut(s) | 13 |
| EcoRII | CCWGG | 3 cut(s) | 416, 429, 442 |
| EcoT38I | GRGCYC | 1 cut(s) | 15 |
| Esp3I | CGTCTC | 2 cut(s) | 170, 325 |
| FaeI | CATG | 3 cut(s) | 83, 145, 290 |
| FaiI | YATR | 6 cut(s) | 81, 143, 195, 239, 288, 314 |
| FatI | CATG | 3 cut(s) | 79, 141, 286 |
| Fnu4HI | GCNGC | 2 cut(s) | 54, 186 |
| FokI | GGATG | 1 cut(s) | 386 |
| FriOI | GRGCYC | 1 cut(s) | 15 |
| Fsp4HI | GCNGC | 2 cut(s) | 54, 186 |
| GlaI | GCGC | 1 cut(s) | 317 |
| GluI | GCNGC | 2 cut(s) | 54, 186 |
| GsuI | CTGGAG | 2 cut(s) | 194, 465 |
| HaeIII | GGCC | 1 cut(s) | 421 |
| HgaI | GACGC | 2 cut(s) | 307, 404 |
| HhaI | GCGC | 1 cut(s) | 318 |
| Hin1I | GRCGYC | 1 cut(s) | 396 |
| Hin1II | CATG | 3 cut(s) | 83, 145, 290 |
| Hin6I | GCGC | 1 cut(s) | 316 |
| HinP1I | GCGC | 1 cut(s) | 316 |
| HphI | GGTGA | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 2 cut(s) | 203, 223 |
| Hpy188III | TCNNGA | 2 cut(s) | 89, 173 |
| Hpy8I | GTNNAC | 2 cut(s) | 203, 223 |
| Hpy99I | CGWCG | 1 cut(s) | 398 |
| HpyAV | CCTTC | 2 cut(s) | 86, 364 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 388 |
| HpyCH4V | TGCA | 4 cut(s) | 20, 53, 193, 266 |
| HpyF3I | CTNAG | 1 cut(s) | 322 |
| Hsp92I | GRCGYC | 1 cut(s) | 396 |
| Hsp92II | CATG | 3 cut(s) | 83, 145, 290 |
| HspAI | GCGC | 1 cut(s) | 316 |
| Kzo9I | GATC | 2 cut(s) | 169, 274 |
| LmnI | GCTCC | 1 cut(s) | 151 |
| Lsp1109I | GCAGC | 2 cut(s) | 65, 172 |
| LweI | GCATC | 3 cut(s) | 40, 275, 337 |
| MabI | ACCWGGT | 1 cut(s) | 429 |
| MaeIII | GTNAC | 3 cut(s) | 106, 354, 382 |
| MalI | GATC | 2 cut(s) | 171, 276 |
| MboI | GATC | 2 cut(s) | 169, 274 |
| MboII | GAAGA | 3 cut(s) | 37, 40, 83 |
| MflI | RGATCY | 1 cut(s) | 169 |
| MhlI | GDGCHC | 1 cut(s) | 15 |
| MlsI | TGGCCA | 1 cut(s) | 421 |
| MluCI | AATT | 1 cut(s) | 246 |
| MluNI | TGGCCA | 1 cut(s) | 421 |
| MnlI | CCTC | 4 cut(s) | 24, 115, 118, 121 |
| Mox20I | TGGCCA | 1 cut(s) | 421 |
| MscI | TGGCCA | 1 cut(s) | 421 |
| MseI | TTAA | 2 cut(s) | 41, 462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| Msp20I | TGGCCA | 1 cut(s) | 421 |
| MspA1I | CMGCKG | 2 cut(s) | 56, 280 |
| MspR9I | CCNGG | 3 cut(s) | 418, 431, 444 |
| MvaI | CCWGG | 3 cut(s) | 418, 431, 444 |
| MvnI | CGCG | 1 cut(s) | 318 |
| NdeII | GATC | 2 cut(s) | 169, 274 |
| NlaIII | CATG | 3 cut(s) | 83, 145, 290 |
| NlaIV | GGNNCC | 3 cut(s) | 98, 147, 456 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| PkrI | GCNGC | 2 cut(s) | 55, 187 |
| Psp124BI | GAGCTC | 1 cut(s) | 15 |
| Psp6I | CCWGG | 3 cut(s) | 416, 429, 442 |
| PspGI | CCWGG | 3 cut(s) | 416, 429, 442 |
| PspN4I | GGNNCC | 3 cut(s) | 98, 147, 456 |
| PsuI | RGATCY | 1 cut(s) | 169 |
| PvuII | CAGCTG | 2 cut(s) | 56, 280 |
| RsaI | GTAC | 1 cut(s) | 406 |
| RsaNI | GTAC | 1 cut(s) | 405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SacI | GAGCTC | 1 cut(s) | 15 |
| SaqAI | TTAA | 2 cut(s) | 41, 462 |
| SatI | GCNGC | 2 cut(s) | 54, 186 |
| Sau3AI | GATC | 2 cut(s) | 169, 274 |
| ScrFI | CCNGG | 3 cut(s) | 418, 431, 444 |
| SduI | GDGCHC | 1 cut(s) | 15 |
| SetI | ASST | 7 cut(s) | 15, 35, 58, 132, 282, 361, 432 |
| SexAI | ACCWGGT | 1 cut(s) | 429 |
| SfaNI | GCATC | 3 cut(s) | 40, 275, 337 |
| SfcI | CTRYAG | 1 cut(s) | 237 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| Sse9I | AATT | 1 cut(s) | 246 |
| SsiI | CCGC | 2 cut(s) | 159, 188 |
| SstI | GAGCTC | 1 cut(s) | 15 |
| StyD4I | CCNGG | 3 cut(s) | 416, 429, 442 |
| TaaI | ACNGT | 2 cut(s) | 8, 388 |
| TaqI | TCGA | 3 cut(s) | 120, 269, 331 |
| TasI | AATT | 1 cut(s) | 246 |
| Tru1I | TTAA | 2 cut(s) | 41, 462 |
| Tru9I | TTAA | 2 cut(s) | 41, 462 |
| TscAI | CASTG | 3 cut(s) | 27, 372, 391 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| TseI | GCWGC | 2 cut(s) | 53, 185 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 1 cut(s) | 96 |
| TspRI | CASTG | 3 cut(s) | 27, 372, 391 |