source UniProtKB
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8039 | PF26133 | 211 - 292 | 2.6e-11 | Domain of unknown function (DUF8039) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1299 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 386 |
| AccI | GTMKAC | 2 cut(s) | 173, 640 |
| AccII | CGCG | 1 cut(s) | 756 |
| AciI | CCGC | 1 cut(s) | 836 |
| AclWI | GGATC | 2 cut(s) | 1280, 1293 |
| AcuI | CTGAAG | 1 cut(s) | 1397 |
| AcyI | GRCGYC | 1 cut(s) | 1300 |
| AdeI | CACNNNGTG | 1 cut(s) | 550 |
| AfaI | GTAC | 5 cut(s) | 155, 166, 560, 1181, 1364 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 331, 386, 1155, 1264, 1424 |
| AflII | CTTAAG | 1 cut(s) | 527 |
| AgsI | TTSAA | 7 cut(s) | 184, 205, 211, 413, 779, 947, 1063 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 22 |
| AjnI | CCWGG | 6 cut(s) | 157, 854, 867, 1195, 1302, 1387 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1247, 1279 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 381, 413 |
| AluBI | AGCT | 6 cut(s) | 149, 718, 846, 992, 1056, 1350 |
| AluI | AGCT | 6 cut(s) | 149, 718, 846, 992, 1056, 1350 |
| Alw21I | GWGCWC | 2 cut(s) | 1039, 1432 |
| Alw26I | GTCTC | 2 cut(s) | 502, 1164 |
| AlwI | GGATC | 2 cut(s) | 1280, 1293 |
| AoxI | GGCC | 2 cut(s) | 857, 1369 |
| ApeKI | GCWGC | 2 cut(s) | 335, 1384 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 396 |
| AspLEI | GCGC | 3 cut(s) | 756, 1302, 1476 |
| AspS9I | GGNCC | 1 cut(s) | 865 |
| AsuC2I | CCSGG | 1 cut(s) | 1259 |
| AsuHPI | GGTGA | 5 cut(s) | 71, 86, 638, 713, 794 |
| AvaII | GGWCC | 1 cut(s) | 865 |
| AxyI | CCTNAGG | 1 cut(s) | 861 |
| BamHI | GGATCC | 1 cut(s) | 1285 |
| BanI | GGYRCC | 1 cut(s) | 1299 |
| BauI | CACGAG | 2 cut(s) | 423, 1161 |
| BbsI | GAAGAC | 1 cut(s) | 932 |
| Bbv12I | GWGCWC | 2 cut(s) | 1039, 1432 |
| BbvCI | CCTCAGC | 1 cut(s) | 993 |
| BbvI | GCAGC | 2 cut(s) | 322, 1396 |
| BccI | CCATC | 4 cut(s) | 131, 227, 275, 1081 |
| BciT130I | CCWGG | 6 cut(s) | 159, 856, 869, 1197, 1304, 1389 |
| BciVI | GTATCC | 1 cut(s) | 646 |
| BcnI | CCSGG | 1 cut(s) | 1259 |
| BcoDI | GTCTC | 2 cut(s) | 502, 1164 |
| BfaI | CTAG | 2 cut(s) | 590, 1533 |
| BfmI | CTRYAG | 1 cut(s) | 1601 |
| BfoI | RGCGCY | 1 cut(s) | 1303 |
| BfrI | CTTAAG | 1 cut(s) | 527 |
| BfuI | GTATCC | 1 cut(s) | 646 |
| BglII | AGATCT | 2 cut(s) | 952, 1203 |
| BisI | GCNGC | 2 cut(s) | 336, 1385 |
| BlsI | GCNGC | 2 cut(s) | 337, 1386 |
| Bme1390I | CCNGG | 7 cut(s) | 159, 856, 869, 1197, 1259, 1304, 1389 |
| Bme18I | GGWCC | 1 cut(s) | 865 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 1 cut(s) | 865 |
| BmiI | GGNNCC | 2 cut(s) | 1287, 1301 |
| BmrFI | CCNGG | 7 cut(s) | 159, 856, 869, 1197, 1259, 1304, 1389 |
| BmrI | ACTGGG | 1 cut(s) | 1534 |
| BmsI | GCATC | 7 cut(s) | 543, 775, 823, 1089, 1265, 1311, 1412 |
| BmuI | ACTGGG | 1 cut(s) | 1534 |
| BpiI | GAAGAC | 1 cut(s) | 932 |
| Bpu10I | CCTNAGC | 1 cut(s) | 993 |
| BpuMI | CCSGG | 1 cut(s) | 1259 |
| BsaHI | GRCGYC | 1 cut(s) | 1300 |
| BsaI | GGTCTC | 2 cut(s) | 502, 1164 |
| BsaJI | CCNNGG | 6 cut(s) | 157, 158, 501, 1196, 1409, 1557 |
| BsaWI | WCCGGW | 1 cut(s) | 1271 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 381, 411 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 331, 386, 1155, 1264, 1424 |
| Bse1I | ACTGG | 7 cut(s) | 254, 522, 648, 803, 1241, 1529, 1615 |
| Bse21I | CCTNAGG | 1 cut(s) | 861 |
| Bse3DI | GCAATG | 1 cut(s) | 675 |
| BseBI | CCWGG | 6 cut(s) | 159, 856, 869, 1197, 1304, 1389 |
| BseDI | CCNNGG | 6 cut(s) | 157, 158, 501, 1196, 1409, 1557 |
| BseGI | GGATG | 7 cut(s) | 94, 316, 817, 835, 964, 1280, 1312 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 331, 386, 1155, 1264, 1424 |
| BseMI | GCAATG | 1 cut(s) | 675 |
| BseMII | CTCAG | 2 cut(s) | 123, 984 |
| BseNI | ACTGG | 7 cut(s) | 254, 522, 648, 803, 1241, 1529, 1615 |
| BseRI | GAGGAG | 2 cut(s) | 107, 1593 |
| BseXI | GCAGC | 2 cut(s) | 322, 1396 |
| Bsh1236I | CGCG | 1 cut(s) | 756 |
| BshFI | GGCC | 2 cut(s) | 859, 1371 |
| BshNI | GGYRCC | 1 cut(s) | 1299 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1039, 1432 |
| BsiSI | CCGG | 3 cut(s) | 44, 1259, 1272 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 331, 386, 1155, 1264, 1424 |
| BsmAI | GTCTC | 2 cut(s) | 502, 1164 |
| BsnI | GGCC | 2 cut(s) | 859, 1371 |
| Bso31I | GGTCTC | 2 cut(s) | 502, 1164 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1039, 1432 |
| Bsp1407I | TGTACA | 3 cut(s) | 164, 1179, 1362 |
| Bsp143I | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| Bsp19I | CCATGG | 1 cut(s) | 501 |
| BspACI | CCGC | 1 cut(s) | 836 |
| BspANI | GGCC | 2 cut(s) | 859, 1371 |
| BspCNI | CTCAG | 2 cut(s) | 122, 985 |
| BspFNI | CGCG | 1 cut(s) | 756 |
| BspLI | GGNNCC | 2 cut(s) | 1287, 1301 |
| BspPI | GGATC | 2 cut(s) | 1280, 1293 |
| BspT107I | GGYRCC | 1 cut(s) | 1299 |
| BspTI | CTTAAG | 1 cut(s) | 527 |
| BspTNI | GGTCTC | 2 cut(s) | 502, 1164 |
| BsrDI | GCAATG | 1 cut(s) | 675 |
| BsrGI | TGTACA | 3 cut(s) | 164, 1179, 1362 |
| BsrI | ACTGG | 7 cut(s) | 254, 522, 648, 803, 1241, 1529, 1615 |
| BssECI | CCNNGG | 6 cut(s) | 157, 158, 501, 1196, 1409, 1557 |
| BssMI | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| BssNI | GRCGYC | 1 cut(s) | 1300 |
| BssSI | CACGAG | 2 cut(s) | 423, 1161 |
| BssT1I | CCWWGG | 2 cut(s) | 501, 1409 |
| Bst2BI | CACGAG | 2 cut(s) | 423, 1161 |
| Bst2UI | CCWGG | 6 cut(s) | 159, 856, 869, 1197, 1304, 1389 |
| Bst4CI | ACNGT | 8 cut(s) | 550, 615, 658, 826, 931, 940, 1034, 1605 |
| Bst6I | CTCTTC | 1 cut(s) | 387 |
| BstACI | GRCGYC | 1 cut(s) | 1300 |
| BstAFI | CTTAAG | 1 cut(s) | 527 |
| BstAUI | TGTACA | 3 cut(s) | 164, 1179, 1362 |
| BstC8I | GCNNGC | 1 cut(s) | 333 |
| BstDEI | CTNAG | 4 cut(s) | 109, 122, 861, 993 |
| BstDSI | CCRYGG | 1 cut(s) | 501 |
| BstF5I | GGATG | 7 cut(s) | 94, 316, 817, 835, 964, 1280, 1312 |
| BstFNI | CGCG | 1 cut(s) | 756 |
| BstH2I | RGCGCY | 1 cut(s) | 1303 |
| BstHHI | GCGC | 3 cut(s) | 756, 1302, 1476 |
| BstKTI | GATC | 5 cut(s) | 584, 955, 1168, 1206, 1288 |
| BstMAI | GTCTC | 2 cut(s) | 502, 1164 |
| BstMBI | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| BstNI | CCWGG | 6 cut(s) | 159, 856, 869, 1197, 1304, 1389 |
| BstNSI | RCATGY | 1 cut(s) | 1598 |
| BstSCI | CCNGG | 7 cut(s) | 157, 854, 867, 1195, 1257, 1302, 1387 |
| BstSFI | CTRYAG | 1 cut(s) | 1601 |
| BstUI | CGCG | 1 cut(s) | 756 |
| BstV1I | GCAGC | 2 cut(s) | 322, 1396 |
| BstV2I | GAAGAC | 1 cut(s) | 932 |
| BstX2I | RGATCY | 3 cut(s) | 952, 1203, 1285 |
| BstYI | RGATCY | 3 cut(s) | 952, 1203, 1285 |
| Bsu36I | CCTNAGG | 1 cut(s) | 861 |
| BsuI | GTATCC | 1 cut(s) | 646 |
| BsuRI | GGCC | 2 cut(s) | 859, 1371 |
| BtgI | CCRYGG | 1 cut(s) | 501 |
| BtsCI | GGATG | 7 cut(s) | 94, 316, 817, 835, 964, 1280, 1312 |
| BtsI | GCAGTG | 1 cut(s) | 654 |
| BtsIMutI | CAGTG | 9 cut(s) | 555, 654, 810, 831, 936, 936, 1132, 1234, 1289 |
| Cac8I | GCNNGC | 1 cut(s) | 333 |
| CfoI | GCGC | 3 cut(s) | 756, 1302, 1476 |
| Cfr13I | GGNCC | 1 cut(s) | 865 |
| CsiI | ACCWGGT | 1 cut(s) | 867 |
| Csp6I | GTAC | 5 cut(s) | 154, 165, 559, 1180, 1363 |
| CviAII | CATG | 9 cut(s) | 502, 536, 725, 881, 1051, 1315, 1471, 1480, 1595 |
| CviQI | GTAC | 5 cut(s) | 154, 165, 559, 1180, 1363 |
| DdeI | CTNAG | 4 cut(s) | 109, 122, 861, 993 |
| DinI | GGCGCC | 1 cut(s) | 1301 |
| DpnI | GATC | 5 cut(s) | 583, 954, 1167, 1205, 1287 |
| DpnII | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| DraI | TTTAAA | 1 cut(s) | 513 |
| DraIII | CACNNNGTG | 1 cut(s) | 550 |
| DriI | GACNNNNNGTC | 1 cut(s) | 22 |
| Eam1104I | CTCTTC | 1 cut(s) | 387 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 22 |
| EarI | CTCTTC | 1 cut(s) | 387 |
| Eco130I | CCWWGG | 2 cut(s) | 501, 1409 |
| Eco147I | AGGCCT | 1 cut(s) | 1371 |
| Eco31I | GGTCTC | 2 cut(s) | 502, 1164 |
| Eco47I | GGWCC | 1 cut(s) | 865 |
| Eco57I | CTGAAG | 1 cut(s) | 1397 |
| Eco81I | CCTNAGG | 1 cut(s) | 861 |
| EcoO109I | RGGNCCY | 1 cut(s) | 865 |
| EcoRII | CCWGG | 6 cut(s) | 157, 854, 867, 1195, 1302, 1387 |
| EcoT14I | CCWWGG | 2 cut(s) | 501, 1409 |
| EgeI | GGCGCC | 1 cut(s) | 1301 |
| EheI | GGCGCC | 1 cut(s) | 1301 |
| ErhI | CCWWGG | 2 cut(s) | 501, 1409 |
| FaeI | CATG | 9 cut(s) | 505, 539, 728, 884, 1054, 1318, 1474, 1483, 1598 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 939, 971 |
| FatI | CATG | 9 cut(s) | 501, 535, 724, 880, 1050, 1314, 1470, 1479, 1594 |
| FblI | GTMKAC | 2 cut(s) | 173, 640 |
| Fnu4HI | GCNGC | 2 cut(s) | 336, 1385 |
| FokI | GGATG | 7 cut(s) | 101, 303, 824, 842, 951, 1287, 1319 |
| Fsp4HI | GCNGC | 2 cut(s) | 336, 1385 |
| FspBI | CTAG | 2 cut(s) | 590, 1533 |
| GlaI | GCGC | 3 cut(s) | 755, 1301, 1475 |
| GluI | GCNGC | 2 cut(s) | 336, 1385 |
| HaeII | RGCGCY | 1 cut(s) | 1303 |
| HaeIII | GGCC | 2 cut(s) | 859, 1371 |
| HapII | CCGG | 3 cut(s) | 44, 1259, 1272 |
| HhaI | GCGC | 3 cut(s) | 756, 1302, 1476 |
| Hin1I | GRCGYC | 1 cut(s) | 1300 |
| Hin1II | CATG | 9 cut(s) | 505, 539, 728, 884, 1054, 1318, 1474, 1483, 1598 |
| Hin6I | GCGC | 3 cut(s) | 754, 1300, 1474 |
| HinP1I | GCGC | 3 cut(s) | 754, 1300, 1474 |
| HincII | GTYRAC | 3 cut(s) | 174, 641, 1232 |
| HindII | GTYRAC | 3 cut(s) | 174, 641, 1232 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HpaII | CCGG | 3 cut(s) | 44, 1259, 1272 |
| HphI | GGTGA | 5 cut(s) | 71, 86, 638, 713, 794 |
| Hpy166II | GTNNAC | 7 cut(s) | 165, 174, 641, 934, 1000, 1232, 1255 |
| Hpy188I | TCNGA | 6 cut(s) | 28, 112, 247, 1117, 1434, 1545 |
| Hpy188III | TCNNGA | 5 cut(s) | 278, 425, 590, 1163, 1610 |
| Hpy8I | GTNNAC | 7 cut(s) | 165, 174, 641, 934, 1000, 1232, 1255 |
| HpyAV | CCTTC | 6 cut(s) | 280, 284, 407, 773, 914, 1477 |
| HpyCH4III | ACNGT | 8 cut(s) | 550, 615, 658, 826, 931, 940, 1034, 1605 |
| HpyCH4IV | ACGT | 1 cut(s) | 1467 |
| HpyCH4V | TGCA | 7 cut(s) | 338, 556, 575, 680, 987, 1102, 1130 |
| HpyF3I | CTNAG | 4 cut(s) | 109, 122, 861, 993 |
| HpySE526I | ACGT | 1 cut(s) | 1467 |
| Hsp92I | GRCGYC | 1 cut(s) | 1300 |
| Hsp92II | CATG | 9 cut(s) | 505, 539, 728, 884, 1054, 1318, 1474, 1483, 1598 |
| HspAI | GCGC | 3 cut(s) | 754, 1300, 1474 |
| KasI | GGCGCC | 1 cut(s) | 1299 |
| Kzo9I | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| LmnI | GCTCC | 4 cut(s) | 843, 884, 1355, 1435 |
| Lsp1109I | GCAGC | 2 cut(s) | 322, 1396 |
| LweI | GCATC | 7 cut(s) | 543, 775, 823, 1089, 1265, 1311, 1412 |
| MabI | ACCWGGT | 1 cut(s) | 867 |
| MaeI | CTAG | 2 cut(s) | 590, 1533 |
| MaeII | ACGT | 1 cut(s) | 1467 |
| MaeIII | GTNAC | 6 cut(s) | 14, 104, 117, 531, 874, 895 |
| MalI | GATC | 5 cut(s) | 583, 954, 1167, 1205, 1287 |
| MboI | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| MfeI | CAATTG | 1 cut(s) | 1131 |
| MflI | RGATCY | 3 cut(s) | 952, 1203, 1285 |
| MhlI | GDGCHC | 2 cut(s) | 1039, 1432 |
| MluCI | AATT | 6 cut(s) | 179, 205, 1131, 1262, 1488, 1563 |
| Mly113I | GGCGCC | 1 cut(s) | 1300 |
| MlyI | GAGTC | 5 cut(s) | 32, 101, 275, 713, 1106 |
| MmeI | TCCRAC | 2 cut(s) | 270, 1324 |
| MroXI | GAANNNNTTC | 1 cut(s) | 396 |
| MseI | TTAA | 6 cut(s) | 383, 512, 528, 578, 821, 1073 |
| MslI | CAYNNNNRTG | 4 cut(s) | 551, 982, 1319, 1358 |
| MspCI | CTTAAG | 1 cut(s) | 527 |
| MspI | CCGG | 3 cut(s) | 44, 1259, 1272 |
| MspR9I | CCNGG | 7 cut(s) | 159, 856, 869, 1197, 1259, 1304, 1389 |
| MunI | CAATTG | 1 cut(s) | 1131 |
| MvaI | CCWGG | 6 cut(s) | 159, 856, 869, 1197, 1304, 1389 |
| MvnI | CGCG | 1 cut(s) | 756 |
| NarI | GGCGCC | 1 cut(s) | 1300 |
| NciI | CCSGG | 1 cut(s) | 1259 |
| NcoI | CCATGG | 1 cut(s) | 501 |
| NdeII | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| NlaIII | CATG | 9 cut(s) | 505, 539, 728, 884, 1054, 1318, 1474, 1483, 1598 |
| NlaIV | GGNNCC | 2 cut(s) | 1287, 1301 |
| NmeAIII | GCCGAG | 1 cut(s) | 1582 |
| NmuCI | GTSAC | 3 cut(s) | 14, 104, 531 |
| NspI | RCATGY | 1 cut(s) | 1598 |
| PasI | CCCWGGG | 1 cut(s) | 158 |
| PceI | AGGCCT | 1 cut(s) | 1371 |
| PdmI | GAANNNNTTC | 1 cut(s) | 396 |
| PfeI | GAWTC | 5 cut(s) | 29, 300, 799, 1213, 1573 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 386 |
| PkrI | GCNGC | 2 cut(s) | 337, 1386 |
| PleI | GAGTC | 5 cut(s) | 31, 101, 274, 712, 1106 |
| PluTI | GGCGCC | 1 cut(s) | 1303 |
| PpsI | GAGTC | 5 cut(s) | 31, 101, 274, 712, 1106 |
| PpuMI | RGGWCCY | 1 cut(s) | 865 |
| Psp5II | RGGWCCY | 1 cut(s) | 865 |
| Psp6I | CCWGG | 6 cut(s) | 157, 854, 867, 1195, 1302, 1387 |
| PspGI | CCWGG | 6 cut(s) | 157, 854, 867, 1195, 1302, 1387 |
| PspN4I | GGNNCC | 2 cut(s) | 1287, 1301 |
| PspPI | GGNCC | 1 cut(s) | 865 |
| PspPPI | RGGWCCY | 1 cut(s) | 865 |
| PsuI | RGATCY | 3 cut(s) | 952, 1203, 1285 |
| RsaI | GTAC | 5 cut(s) | 155, 166, 560, 1181, 1364 |
| RsaNI | GTAC | 5 cut(s) | 154, 165, 559, 1180, 1363 |
| RseI | CAYNNNNRTG | 4 cut(s) | 551, 982, 1319, 1358 |
| SalI | GTCGAC | 2 cut(s) | 172, 639 |
| SaqAI | TTAA | 6 cut(s) | 383, 512, 528, 578, 821, 1073 |
| SatI | GCNGC | 2 cut(s) | 336, 1385 |
| Sau3AI | GATC | 5 cut(s) | 581, 952, 1165, 1203, 1285 |
| Sau96I | GGNCC | 1 cut(s) | 865 |
| SchI | GAGTC | 5 cut(s) | 32, 101, 275, 713, 1106 |
| ScrFI | CCNGG | 7 cut(s) | 159, 856, 869, 1197, 1259, 1304, 1389 |
| SduI | GDGCHC | 2 cut(s) | 1039, 1432 |
| SexAI | ACCWGGT | 1 cut(s) | 867 |
| SfaNI | GCATC | 7 cut(s) | 543, 775, 823, 1089, 1265, 1311, 1412 |
| SfcI | CTRYAG | 1 cut(s) | 1601 |
| SfoI | GGCGCC | 1 cut(s) | 1301 |
| SinI | GGWCC | 1 cut(s) | 865 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 551, 982, 1319, 1358 |
| SmlI | CTYRAG | 1 cut(s) | 527 |
| SmoI | CTYRAG | 1 cut(s) | 527 |
| Sse9I | AATT | 6 cut(s) | 179, 205, 1131, 1262, 1488, 1563 |
| SseBI | AGGCCT | 1 cut(s) | 1371 |
| SsiI | CCGC | 1 cut(s) | 836 |
| SspDI | GGCGCC | 1 cut(s) | 1299 |
| SspI | AATATT | 1 cut(s) | 484 |
| SspMI | CTAG | 2 cut(s) | 590, 1533 |
| StuI | AGGCCT | 1 cut(s) | 1371 |
| StyD4I | CCNGG | 7 cut(s) | 157, 854, 867, 1195, 1257, 1302, 1387 |
| StyI | CCWWGG | 2 cut(s) | 501, 1409 |
| TaaI | ACNGT | 8 cut(s) | 550, 615, 658, 826, 931, 940, 1034, 1605 |
| TaiI | ACGT | 1 cut(s) | 1470 |
| TaqI | TCGA | 5 cut(s) | 173, 640, 1028, 1110, 1576 |
| TaqII | GACCGA | 1 cut(s) | 512 |
| TasI | AATT | 6 cut(s) | 179, 205, 1131, 1262, 1488, 1563 |
| TatI | WGTACW | 3 cut(s) | 164, 1179, 1362 |
| TfiI | GAWTC | 5 cut(s) | 29, 300, 799, 1213, 1573 |
| Tru1I | TTAA | 6 cut(s) | 383, 512, 528, 578, 821, 1073 |
| Tru9I | TTAA | 6 cut(s) | 383, 512, 528, 578, 821, 1073 |
| TscAI | CASTG | 9 cut(s) | 555, 654, 810, 831, 936, 943, 1132, 1241, 1296 |
| TseFI | GTSAC | 3 cut(s) | 14, 104, 531 |
| TseI | GCWGC | 2 cut(s) | 335, 1384 |
| Tsp45I | GTSAC | 3 cut(s) | 14, 104, 531 |
| TspDTI | ATGAA | 5 cut(s) | 303, 378, 1323, 1331, 1496 |
| TspGWI | ACGGA | 1 cut(s) | 237 |
| TspRI | CASTG | 9 cut(s) | 555, 654, 810, 831, 936, 943, 1132, 1241, 1296 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 386 |
| Vha464I | CTTAAG | 1 cut(s) | 527 |
| VpaK11BI | GGWCC | 1 cut(s) | 865 |
| XbaI | TCTAGA | 1 cut(s) | 589 |
| XceI | RCATGY | 1 cut(s) | 1598 |
| XmiI | GTMKAC | 2 cut(s) | 173, 640 |
| XmnI | GAANNNNTTC | 1 cut(s) | 396 |
| XspI | CTAG | 2 cut(s) | 590, 1533 |