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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 662 |
| Acc36I | ACCTGC | 2 cut(s) | 411, 662 |
| AccB1I | GGYRCC | 1 cut(s) | 100 |
| AccII | CGCG | 1 cut(s) | 98 |
| AciI | CCGC | 3 cut(s) | 96, 98, 511 |
| AcoI | YGGCCR | 1 cut(s) | 508 |
| AcsI | RAATTY | 3 cut(s) | 45, 501, 626 |
| AcuI | CTGAAG | 2 cut(s) | 216, 330 |
| AfaI | GTAC | 1 cut(s) | 611 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 29, 158, 520, 667 |
| AflIII | ACRYGT | 1 cut(s) | 272 |
| AgsI | TTSAA | 4 cut(s) | 73, 109, 158, 463 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 489, 521 |
| AleI | CACNNNNGTG | 2 cut(s) | 197, 587 |
| AluBI | AGCT | 6 cut(s) | 82, 294, 436, 527, 603, 722 |
| AluI | AGCT | 6 cut(s) | 82, 294, 436, 527, 603, 722 |
| AoxI | GGCC | 4 cut(s) | 124, 284, 447, 508 |
| ApeKI | GCWGC | 2 cut(s) | 52, 603 |
| ApoI | RAATTY | 3 cut(s) | 45, 501, 626 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 725 |
| AspLEI | GCGC | 1 cut(s) | 679 |
| AspS9I | GGNCC | 2 cut(s) | 32, 447 |
| AsuHPI | GGTGA | 1 cut(s) | 466 |
| AvaII | GGWCC | 1 cut(s) | 32 |
| BaeGI | GKGCMC | 1 cut(s) | 105 |
| BanI | GGYRCC | 1 cut(s) | 100 |
| BanII | GRGCYC | 1 cut(s) | 709 |
| BbvI | GCAGC | 2 cut(s) | 64, 590 |
| BccI | CCATC | 2 cut(s) | 135, 485 |
| BclI | TGATCA | 1 cut(s) | 382 |
| BfaI | CTAG | 2 cut(s) | 182, 288 |
| BfuAI | ACCTGC | 2 cut(s) | 411, 662 |
| BisI | GCNGC | 4 cut(s) | 53, 96, 511, 604 |
| BlsI | GCNGC | 4 cut(s) | 54, 97, 512, 605 |
| Bme18I | GGWCC | 1 cut(s) | 32 |
| BmgT120I | GGNCC | 2 cut(s) | 32, 447 |
| BmiI | GGNNCC | 2 cut(s) | 34, 102 |
| BmrI | ACTGGG | 1 cut(s) | 454 |
| BmsI | GCATC | 2 cut(s) | 22, 250 |
| BmuI | ACTGGG | 1 cut(s) | 454 |
| Bpu10I | CCTNAGC | 1 cut(s) | 666 |
| BsaBI | GATNNNNATC | 1 cut(s) | 381 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 29, 158, 520, 667 |
| Bse1I | ACTGG | 1 cut(s) | 449 |
| Bse8I | GATNNNNATC | 1 cut(s) | 381 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseGI | GGATG | 2 cut(s) | 13, 477 |
| BseJI | GATNNNNATC | 1 cut(s) | 381 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 29, 158, 520, 667 |
| BseMII | CTCAG | 1 cut(s) | 680 |
| BseNI | ACTGG | 1 cut(s) | 449 |
| BseSI | GKGCMC | 1 cut(s) | 105 |
| BseXI | GCAGC | 2 cut(s) | 64, 590 |
| Bsh1236I | CGCG | 1 cut(s) | 98 |
| Bsh1285I | CGRYCG | 1 cut(s) | 23 |
| BshFI | GGCC | 4 cut(s) | 126, 286, 449, 510 |
| BshNI | GGYRCC | 1 cut(s) | 100 |
| BsiEI | CGRYCG | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 29, 158, 520, 667 |
| BsnI | GGCC | 4 cut(s) | 126, 286, 449, 510 |
| Bsp1286I | GDGCHC | 2 cut(s) | 105, 709 |
| Bsp143I | GATC | 3 cut(s) | 57, 178, 382 |
| BspACI | CCGC | 3 cut(s) | 96, 98, 511 |
| BspANI | GGCC | 4 cut(s) | 126, 286, 449, 510 |
| BspCNI | CTCAG | 1 cut(s) | 679 |
| BspFNI | CGCG | 1 cut(s) | 98 |
| BspHI | TCATGA | 1 cut(s) | 385 |
| BspLI | GGNNCC | 2 cut(s) | 34, 102 |
| BspMI | ACCTGC | 2 cut(s) | 411, 662 |
| BspT107I | GGYRCC | 1 cut(s) | 100 |
| BsrI | ACTGG | 1 cut(s) | 449 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssMI | GATC | 3 cut(s) | 57, 178, 382 |
| Bst4CI | ACNGT | 1 cut(s) | 338 |
| Bst6I | CTCTTC | 1 cut(s) | 532 |
| BstDEI | CTNAG | 1 cut(s) | 666 |
| BstDSI | CCRYGG | 1 cut(s) | 96 |
| BstEII | GGTNACC | 1 cut(s) | 472 |
| BstF5I | GGATG | 2 cut(s) | 13, 477 |
| BstFNI | CGCG | 1 cut(s) | 98 |
| BstHHI | GCGC | 1 cut(s) | 679 |
| BstKTI | GATC | 3 cut(s) | 60, 181, 385 |
| BstMBI | GATC | 3 cut(s) | 57, 178, 382 |
| BstMCI | CGRYCG | 1 cut(s) | 23 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 728 |
| BstNSI | RCATGY | 1 cut(s) | 276 |
| BstPI | GGTNACC | 1 cut(s) | 472 |
| BstSLI | GKGCMC | 1 cut(s) | 105 |
| BstUI | CGCG | 1 cut(s) | 98 |
| BstV1I | GCAGC | 2 cut(s) | 64, 590 |
| BsuRI | GGCC | 4 cut(s) | 126, 286, 449, 510 |
| BtgI | CCRYGG | 1 cut(s) | 96 |
| BtsCI | GGATG | 2 cut(s) | 13, 477 |
| BtsIMutI | CAGTG | 2 cut(s) | 192, 442 |
| BveI | ACCTGC | 2 cut(s) | 411, 662 |
| CciI | TCATGA | 1 cut(s) | 385 |
| CfoI | GCGC | 1 cut(s) | 679 |
| Cfr13I | GGNCC | 2 cut(s) | 32, 447 |
| Cfr42I | CCGCGG | 1 cut(s) | 99 |
| CseI | GACGC | 1 cut(s) | 565 |
| Csp6I | GTAC | 1 cut(s) | 610 |
| CviAII | CATG | 5 cut(s) | 118, 273, 386, 553, 643 |
| CviQI | GTAC | 1 cut(s) | 610 |
| DdeI | CTNAG | 1 cut(s) | 666 |
| DpnI | GATC | 3 cut(s) | 59, 180, 384 |
| DpnII | GATC | 3 cut(s) | 57, 178, 382 |
| EaeI | YGGCCR | 1 cut(s) | 508 |
| Eam1104I | CTCTTC | 1 cut(s) | 532 |
| EarI | CTCTTC | 1 cut(s) | 532 |
| Eco24I | GRGCYC | 1 cut(s) | 709 |
| Eco32I | GATATC | 1 cut(s) | 573 |
| Eco47I | GGWCC | 1 cut(s) | 32 |
| Eco57I | CTGAAG | 2 cut(s) | 216, 330 |
| Eco91I | GGTNACC | 1 cut(s) | 472 |
| EcoO65I | GGTNACC | 1 cut(s) | 472 |
| EcoRV | GATATC | 1 cut(s) | 573 |
| EcoT38I | GRGCYC | 1 cut(s) | 709 |
| FaeI | CATG | 5 cut(s) | 121, 276, 389, 556, 646 |
| FatI | CATG | 5 cut(s) | 117, 272, 385, 552, 642 |
| FbaI | TGATCA | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 4 cut(s) | 53, 96, 511, 604 |
| FokI | GGATG | 1 cut(s) | 464 |
| FriOI | GRGCYC | 1 cut(s) | 709 |
| Fsp4HI | GCNGC | 4 cut(s) | 53, 96, 511, 604 |
| FspBI | CTAG | 2 cut(s) | 182, 288 |
| GlaI | GCGC | 1 cut(s) | 678 |
| GluI | GCNGC | 4 cut(s) | 53, 96, 511, 604 |
| HaeIII | GGCC | 4 cut(s) | 126, 286, 449, 510 |
| HgaI | GACGC | 1 cut(s) | 565 |
| HhaI | GCGC | 1 cut(s) | 679 |
| Hin1II | CATG | 5 cut(s) | 121, 276, 389, 556, 646 |
| Hin6I | GCGC | 1 cut(s) | 677 |
| HinP1I | GCGC | 1 cut(s) | 677 |
| HincII | GTYRAC | 1 cut(s) | 319 |
| HindII | GTYRAC | 1 cut(s) | 319 |
| HindIII | AAGCTT | 1 cut(s) | 292 |
| HinfI | GANTC | 1 cut(s) | 691 |
| HphI | GGTGA | 1 cut(s) | 466 |
| Hpy166II | GTNNAC | 1 cut(s) | 319 |
| Hpy188I | TCNGA | 1 cut(s) | 32 |
| Hpy188III | TCNNGA | 3 cut(s) | 182, 386, 460 |
| Hpy8I | GTNNAC | 1 cut(s) | 319 |
| HpyAV | CCTTC | 3 cut(s) | 152, 559, 661 |
| HpyCH4III | ACNGT | 1 cut(s) | 338 |
| HpyCH4V | TGCA | 4 cut(s) | 67, 622, 640, 731 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 728 |
| HpyF3I | CTNAG | 1 cut(s) | 666 |
| Hsp92II | CATG | 5 cut(s) | 121, 276, 389, 556, 646 |
| HspAI | GCGC | 1 cut(s) | 677 |
| Ksp22I | TGATCA | 1 cut(s) | 382 |
| KspI | CCGCGG | 1 cut(s) | 99 |
| Kzo9I | GATC | 3 cut(s) | 57, 178, 382 |
| LmnI | GCTCC | 2 cut(s) | 325, 433 |
| LpnPI | CCDG | 7 cut(s) | 321, 416, 430, 620, 653, 657, 675 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 590 |
| LweI | GCATC | 2 cut(s) | 22, 250 |
| MaeI | CTAG | 2 cut(s) | 182, 288 |
| MaeIII | GTNAC | 2 cut(s) | 190, 472 |
| MalI | GATC | 3 cut(s) | 59, 180, 384 |
| MboI | GATC | 3 cut(s) | 57, 178, 382 |
| MboII | GAAGA | 7 cut(s) | 85, 121, 158, 386, 475, 509, 549 |
| MhlI | GDGCHC | 2 cut(s) | 105, 709 |
| MluCI | AATT | 5 cut(s) | 45, 84, 342, 501, 626 |
| MmeI | TCCRAC | 1 cut(s) | 719 |
| MnlI | CCTC | 4 cut(s) | 55, 161, 178, 354 |
| MseI | TTAA | 1 cut(s) | 630 |
| MslI | CAYNNNNRTG | 3 cut(s) | 197, 587, 590 |
| MspA1I | CMGCKG | 1 cut(s) | 98 |
| MvnI | CGCG | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 728 |
| NdeII | GATC | 3 cut(s) | 57, 178, 382 |
| NlaIII | CATG | 5 cut(s) | 121, 276, 389, 556, 646 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 102 |
| NmuCI | GTSAC | 2 cut(s) | 190, 472 |
| NspI | RCATGY | 1 cut(s) | 276 |
| OliI | CACNNNNGTG | 2 cut(s) | 197, 587 |
| PagI | TCATGA | 1 cut(s) | 385 |
| PaqCI | CACCTGC | 1 cut(s) | 662 |
| PciI | ACATGT | 1 cut(s) | 272 |
| PfeI | GAWTC | 1 cut(s) | 691 |
| PkrI | GCNGC | 4 cut(s) | 54, 97, 512, 605 |
| PscI | ACATGT | 1 cut(s) | 272 |
| PspEI | GGTNACC | 1 cut(s) | 472 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 102 |
| PspPI | GGNCC | 2 cut(s) | 32, 447 |
| RsaI | GTAC | 1 cut(s) | 611 |
| RsaNI | GTAC | 1 cut(s) | 610 |
| RseI | CAYNNNNRTG | 3 cut(s) | 197, 587, 590 |
| SacII | CCGCGG | 1 cut(s) | 99 |
| SaqAI | TTAA | 1 cut(s) | 630 |
| SatI | GCNGC | 4 cut(s) | 53, 96, 511, 604 |
| Sau3AI | GATC | 3 cut(s) | 57, 178, 382 |
| Sau96I | GGNCC | 2 cut(s) | 32, 447 |
| SduI | GDGCHC | 2 cut(s) | 105, 709 |
| SfaNI | GCATC | 2 cut(s) | 22, 250 |
| Sfr303I | CCGCGG | 1 cut(s) | 99 |
| SgrBI | CCGCGG | 1 cut(s) | 99 |
| SinI | GGWCC | 1 cut(s) | 32 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 197, 587, 590 |
| Sse9I | AATT | 5 cut(s) | 45, 84, 342, 501, 626 |
| SsiI | CCGC | 3 cut(s) | 96, 98, 511 |
| SspMI | CTAG | 2 cut(s) | 182, 288 |
| TaaI | ACNGT | 1 cut(s) | 338 |
| TaqI | TCGA | 1 cut(s) | 60 |
| TaqII | GACCGA | 1 cut(s) | 37 |
| TasI | AATT | 5 cut(s) | 45, 84, 342, 501, 626 |
| TauI | GCSGC | 2 cut(s) | 98, 513 |
| TfiI | GAWTC | 1 cut(s) | 691 |
| Tru1I | TTAA | 1 cut(s) | 630 |
| Tru9I | TTAA | 1 cut(s) | 630 |
| TscAI | CASTG | 2 cut(s) | 199, 449 |
| TseFI | GTSAC | 2 cut(s) | 190, 472 |
| TseI | GCWGC | 2 cut(s) | 52, 603 |
| Tsp45I | GTSAC | 2 cut(s) | 190, 472 |
| TspDTI | ATGAA | 3 cut(s) | 387, 578, 643 |
| TspGWI | ACGGA | 1 cut(s) | 131 |
| TspRI | CASTG | 2 cut(s) | 199, 449 |
| VpaK11BI | GGWCC | 1 cut(s) | 32 |
| XapI | RAATTY | 3 cut(s) | 45, 501, 626 |
| XbaI | TCTAGA | 1 cut(s) | 181 |
| XceI | RCATGY | 1 cut(s) | 276 |
| XspI | CTAG | 2 cut(s) | 182, 288 |