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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 117 |
| AccIII | TCCGGA | 1 cut(s) | 493 |
| AciI | CCGC | 3 cut(s) | 131, 368, 379 |
| AclWI | GGATC | 2 cut(s) | 359, 372 |
| AcuI | CTGAAG | 1 cut(s) | 363 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 396 |
| AflII | CTTAAG | 1 cut(s) | 134 |
| AgeI | ACCGGT | 1 cut(s) | 389 |
| AgsI | TTSAA | 4 cut(s) | 169, 433, 470, 670 |
| AluBI | AGCT | 2 cut(s) | 277, 309 |
| AluI | AGCT | 2 cut(s) | 277, 309 |
| Alw21I | GWGCWC | 1 cut(s) | 149 |
| AlwI | GGATC | 2 cut(s) | 359, 372 |
| Aor13HI | TCCGGA | 1 cut(s) | 493 |
| AoxI | GGCC | 1 cut(s) | 454 |
| ApeKI | GCWGC | 1 cut(s) | 28 |
| AsiGI | ACCGGT | 1 cut(s) | 389 |
| AsuC2I | CCSGG | 1 cut(s) | 638 |
| AsuHPI | GGTGA | 3 cut(s) | 379, 404, 518 |
| AxyI | CCTNAGG | 1 cut(s) | 196 |
| BamHI | GGATCC | 1 cut(s) | 364 |
| Bbv12I | GWGCWC | 1 cut(s) | 149 |
| BbvI | GCAGC | 1 cut(s) | 40 |
| BccI | CCATC | 3 cut(s) | 167, 428, 496 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BcnI | CCSGG | 1 cut(s) | 638 |
| BfaI | CTAG | 1 cut(s) | 679 |
| BfrI | CTTAAG | 1 cut(s) | 134 |
| BfuAI | ACCTGC | 1 cut(s) | 117 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BisI | GCNGC | 2 cut(s) | 29, 380 |
| BlsI | GCNGC | 2 cut(s) | 30, 381 |
| Bme1390I | CCNGG | 1 cut(s) | 638 |
| BmiI | GGNNCC | 1 cut(s) | 366 |
| BmrFI | CCNGG | 1 cut(s) | 638 |
| BpuMI | CCSGG | 1 cut(s) | 638 |
| BsaWI | WCCGGW | 2 cut(s) | 389, 493 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 396 |
| Bse118I | RCCGGY | 1 cut(s) | 389 |
| Bse21I | CCTNAGG | 1 cut(s) | 196 |
| BseAI | TCCGGA | 1 cut(s) | 493 |
| BseGI | GGATG | 3 cut(s) | 178, 253, 324 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 396 |
| BseRI | GAGGAG | 1 cut(s) | 67 |
| BseXI | GCAGC | 1 cut(s) | 40 |
| BshFI | GGCC | 1 cut(s) | 456 |
| BshTI | ACCGGT | 1 cut(s) | 389 |
| BsiHKAI | GWGCWC | 1 cut(s) | 149 |
| BsiSI | CCGG | 3 cut(s) | 390, 494, 637 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 396 |
| BsmI | GAATGC | 1 cut(s) | 489 |
| BsnI | GGCC | 1 cut(s) | 456 |
| Bsp1286I | GDGCHC | 1 cut(s) | 149 |
| Bsp13I | TCCGGA | 1 cut(s) | 493 |
| Bsp143I | GATC | 1 cut(s) | 364 |
| BspACI | CCGC | 3 cut(s) | 131, 368, 379 |
| BspANI | GGCC | 1 cut(s) | 456 |
| BspEI | TCCGGA | 1 cut(s) | 493 |
| BspHI | TCATGA | 1 cut(s) | 91 |
| BspLI | GGNNCC | 1 cut(s) | 366 |
| BspMI | ACCTGC | 1 cut(s) | 117 |
| BspPI | GGATC | 2 cut(s) | 359, 372 |
| BspTI | CTTAAG | 1 cut(s) | 134 |
| BsrFI | RCCGGY | 1 cut(s) | 389 |
| BssAI | RCCGGY | 1 cut(s) | 389 |
| BssMI | GATC | 1 cut(s) | 364 |
| Bst4CI | ACNGT | 3 cut(s) | 290, 328, 466 |
| BstAFI | CTTAAG | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 1 cut(s) | 487 |
| BstDEI | CTNAG | 2 cut(s) | 196, 582 |
| BstF5I | GGATG | 3 cut(s) | 178, 253, 324 |
| BstKTI | GATC | 1 cut(s) | 367 |
| BstMBI | GATC | 1 cut(s) | 364 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 130, 376, 647 |
| BstSCI | CCNGG | 1 cut(s) | 636 |
| BstV1I | GCAGC | 1 cut(s) | 40 |
| BstX2I | RGATCY | 1 cut(s) | 364 |
| BstYI | RGATCY | 1 cut(s) | 364 |
| Bsu36I | CCTNAGG | 1 cut(s) | 196 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 456 |
| BtsCI | GGATG | 3 cut(s) | 178, 253, 324 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| BveI | ACCTGC | 1 cut(s) | 117 |
| Cac8I | GCNNGC | 1 cut(s) | 487 |
| CciI | TCATGA | 1 cut(s) | 91 |
| Cfr10I | RCCGGY | 1 cut(s) | 389 |
| CspAI | ACCGGT | 1 cut(s) | 389 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 102, 137 |
| CviAII | CATG | 7 cut(s) | 74, 92, 150, 259, 268, 361, 541 |
| CviJI | RGCY | 5 cut(s) | 155, 277, 309, 382, 456 |
| CviKI_1 | RGCY | 5 cut(s) | 155, 277, 309, 382, 456 |
| DdeI | CTNAG | 2 cut(s) | 196, 582 |
| DpnI | GATC | 1 cut(s) | 366 |
| DpnII | GATC | 1 cut(s) | 364 |
| Eco32I | GATATC | 1 cut(s) | 218 |
| Eco57I | CTGAAG | 1 cut(s) | 363 |
| Eco81I | CCTNAGG | 1 cut(s) | 196 |
| EcoRV | GATATC | 1 cut(s) | 218 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 537 |
| FaeI | CATG | 7 cut(s) | 77, 95, 153, 262, 271, 364, 544 |
| FatI | CATG | 7 cut(s) | 73, 91, 149, 258, 267, 360, 540 |
| Fnu4HI | GCNGC | 2 cut(s) | 29, 380 |
| FokI | GGATG | 3 cut(s) | 185, 260, 331 |
| Fsp4HI | GCNGC | 2 cut(s) | 29, 380 |
| FspBI | CTAG | 1 cut(s) | 679 |
| GluI | GCNGC | 2 cut(s) | 29, 380 |
| HaeIII | GGCC | 1 cut(s) | 456 |
| HapII | CCGG | 3 cut(s) | 390, 494, 637 |
| Hin1II | CATG | 7 cut(s) | 77, 95, 153, 262, 271, 364, 544 |
| HincII | GTYRAC | 1 cut(s) | 324 |
| HindII | GTYRAC | 1 cut(s) | 324 |
| HpaII | CCGG | 3 cut(s) | 390, 494, 637 |
| HphI | GGTGA | 3 cut(s) | 379, 404, 518 |
| Hpy166II | GTNNAC | 2 cut(s) | 324, 412 |
| Hpy188I | TCNGA | 2 cut(s) | 215, 242 |
| Hpy188III | TCNNGA | 2 cut(s) | 92, 494 |
| Hpy8I | GTNNAC | 2 cut(s) | 324, 412 |
| HpyAV | CCTTC | 4 cut(s) | 58, 163, 237, 265 |
| HpyCH4III | ACNGT | 3 cut(s) | 290, 328, 466 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 28, 437, 485, 535 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 130, 376, 647 |
| HpyF3I | CTNAG | 2 cut(s) | 196, 582 |
| Hsp92II | CATG | 7 cut(s) | 77, 95, 153, 262, 271, 364, 544 |
| Kpn2I | TCCGGA | 1 cut(s) | 493 |
| Kzo9I | GATC | 1 cut(s) | 364 |
| LmnI | GCTCC | 2 cut(s) | 274, 496 |
| LpnPI | CCDG | 6 cut(s) | 122, 267, 403, 471, 507, 650 |
| Lsp1109I | GCAGC | 1 cut(s) | 40 |
| MaeI | CTAG | 1 cut(s) | 679 |
| MaeIII | GTNAC | 2 cut(s) | 178, 385 |
| MalI | GATC | 1 cut(s) | 366 |
| MboI | GATC | 1 cut(s) | 364 |
| MboII | GAAGA | 1 cut(s) | 356 |
| MfeI | CAATTG | 1 cut(s) | 23 |
| MflI | RGATCY | 1 cut(s) | 364 |
| MhlI | GDGCHC | 1 cut(s) | 149 |
| MluCI | AATT | 4 cut(s) | 23, 45, 118, 206 |
| MnlI | CCTC | 7 cut(s) | 45, 48, 135, 196, 369, 537, 550 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 537 |
| MroI | TCCGGA | 1 cut(s) | 493 |
| MseI | TTAA | 1 cut(s) | 135 |
| MspCI | CTTAAG | 1 cut(s) | 134 |
| MspI | CCGG | 3 cut(s) | 390, 494, 637 |
| MspR9I | CCNGG | 1 cut(s) | 638 |
| MunI | CAATTG | 1 cut(s) | 23 |
| Mva1269I | GAATGC | 1 cut(s) | 489 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 130, 376, 647 |
| NciI | CCSGG | 1 cut(s) | 638 |
| NdeII | GATC | 1 cut(s) | 364 |
| NlaIII | CATG | 7 cut(s) | 77, 95, 153, 262, 271, 364, 544 |
| NlaIV | GGNNCC | 1 cut(s) | 366 |
| NmuCI | GTSAC | 1 cut(s) | 385 |
| NsiI | ATGCAT | 2 cut(s) | 6, 537 |
| PagI | TCATGA | 1 cut(s) | 91 |
| PctI | GAATGC | 1 cut(s) | 489 |
| PinAI | ACCGGT | 1 cut(s) | 389 |
| PkrI | GCNGC | 2 cut(s) | 30, 381 |
| PspN4I | GGNNCC | 1 cut(s) | 366 |
| PsuI | RGATCY | 1 cut(s) | 364 |
| SaqAI | TTAA | 1 cut(s) | 135 |
| SatI | GCNGC | 2 cut(s) | 29, 380 |
| Sau3AI | GATC | 1 cut(s) | 364 |
| ScrFI | CCNGG | 1 cut(s) | 638 |
| SduI | GDGCHC | 1 cut(s) | 149 |
| SetI | ASST | 5 cut(s) | 111, 197, 231, 279, 311 |
| SgrAI | CRCCGGYG | 1 cut(s) | 389 |
| SmlI | CTYRAG | 1 cut(s) | 134 |
| SmoI | CTYRAG | 1 cut(s) | 134 |
| Sse9I | AATT | 4 cut(s) | 23, 45, 118, 206 |
| SsiI | CCGC | 3 cut(s) | 131, 368, 379 |
| SspI | AATATT | 1 cut(s) | 429 |
| SspMI | CTAG | 1 cut(s) | 679 |
| StyD4I | CCNGG | 1 cut(s) | 636 |
| TaaI | ACNGT | 3 cut(s) | 290, 328, 466 |
| TasI | AATT | 4 cut(s) | 23, 45, 118, 206 |
| TauI | GCSGC | 1 cut(s) | 382 |
| Tru1I | TTAA | 1 cut(s) | 135 |
| Tru9I | TTAA | 1 cut(s) | 135 |
| TscAI | CASTG | 1 cut(s) | 346 |
| TseFI | GTSAC | 1 cut(s) | 385 |
| TseI | GCWGC | 1 cut(s) | 28 |
| Tsp45I | GTSAC | 1 cut(s) | 385 |
| TspDTI | ATGAA | 3 cut(s) | 284, 349, 677 |
| TspRI | CASTG | 1 cut(s) | 346 |
| Vha464I | CTTAAG | 1 cut(s) | 134 |
| XspI | CTAG | 1 cut(s) | 679 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 537 |