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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 159 |
| AccB1I | GGYRCC | 1 cut(s) | 145 |
| AclWI | GGATC | 1 cut(s) | 385 |
| AcsI | RAATTY | 1 cut(s) | 530 |
| AcuI | CTGAAG | 1 cut(s) | 110 |
| AfaI | GTAC | 2 cut(s) | 314, 611 |
| AflII | CTTAAG | 1 cut(s) | 62 |
| AflIII | ACRYGT | 1 cut(s) | 206 |
| AgeI | ACCGGT | 1 cut(s) | 148 |
| AgsI | TTSAA | 3 cut(s) | 219, 535, 547 |
| AluBI | AGCT | 5 cut(s) | 16, 445, 463, 515, 625 |
| AluI | AGCT | 5 cut(s) | 16, 445, 463, 515, 625 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| AlwI | GGATC | 1 cut(s) | 385 |
| ApeKI | GCWGC | 3 cut(s) | 16, 344, 512 |
| ApoI | RAATTY | 1 cut(s) | 530 |
| AsiGI | ACCGGT | 1 cut(s) | 148 |
| AspLEI | GCGC | 1 cut(s) | 160 |
| AspS9I | GGNCC | 1 cut(s) | 479 |
| AsuHPI | GGTGA | 1 cut(s) | 588 |
| AvaII | GGWCC | 1 cut(s) | 479 |
| AxyI | CCTNAGG | 2 cut(s) | 141, 603 |
| BanI | GGYRCC | 1 cut(s) | 145 |
| BbsI | GAAGAC | 3 cut(s) | 18, 582, 642 |
| BbvI | GCAGC | 3 cut(s) | 3, 356, 524 |
| BccI | CCATC | 1 cut(s) | 73 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 96, 130, 337, 371 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfaI | CTAG | 2 cut(s) | 84, 654 |
| BfmI | CTRYAG | 1 cut(s) | 510 |
| BfrI | CTTAAG | 1 cut(s) | 62 |
| BisI | GCNGC | 3 cut(s) | 17, 345, 513 |
| BlsI | GCNGC | 3 cut(s) | 18, 346, 514 |
| Bme18I | GGWCC | 1 cut(s) | 479 |
| BmgT120I | GGNCC | 1 cut(s) | 479 |
| BmiI | GGNNCC | 1 cut(s) | 147 |
| BmsI | GCATC | 3 cut(s) | 274, 345, 415 |
| BpiI | GAAGAC | 3 cut(s) | 18, 582, 642 |
| BsaBI | GATNNNNATC | 1 cut(s) | 395 |
| BsaWI | WCCGGW | 1 cut(s) | 148 |
| Bse118I | RCCGGY | 1 cut(s) | 148 |
| Bse1I | ACTGG | 1 cut(s) | 638 |
| Bse21I | CCTNAGG | 2 cut(s) | 141, 603 |
| Bse8I | GATNNNNATC | 1 cut(s) | 395 |
| BseGI | GGATG | 1 cut(s) | 430 |
| BseJI | GATNNNNATC | 1 cut(s) | 395 |
| BseMII | CTCAG | 1 cut(s) | 617 |
| BseNI | ACTGG | 1 cut(s) | 638 |
| BseXI | GCAGC | 3 cut(s) | 3, 356, 524 |
| BshNI | GGYRCC | 1 cut(s) | 145 |
| BshTI | ACCGGT | 1 cut(s) | 148 |
| BsiSI | CCGG | 1 cut(s) | 149 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| Bsp143I | GATC | 2 cut(s) | 58, 390 |
| BspCNI | CTCAG | 1 cut(s) | 616 |
| BspLI | GGNNCC | 1 cut(s) | 147 |
| BspMAI | CTGCAG | 1 cut(s) | 514 |
| BspPI | GGATC | 1 cut(s) | 385 |
| BspT107I | GGYRCC | 1 cut(s) | 145 |
| BspTI | CTTAAG | 1 cut(s) | 62 |
| BsrFI | RCCGGY | 1 cut(s) | 148 |
| BsrI | ACTGG | 1 cut(s) | 638 |
| BssAI | RCCGGY | 1 cut(s) | 148 |
| BssMI | GATC | 2 cut(s) | 58, 390 |
| Bst6I | CTCTTC | 2 cut(s) | 86, 542 |
| BstAFI | CTTAAG | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 3 cut(s) | 382, 465, 627 |
| BstDEI | CTNAG | 2 cut(s) | 141, 603 |
| BstF5I | GGATG | 1 cut(s) | 430 |
| BstHHI | GCGC | 1 cut(s) | 160 |
| BstKTI | GATC | 2 cut(s) | 61, 393 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMBI | GATC | 2 cut(s) | 58, 390 |
| BstNSI | RCATGY | 1 cut(s) | 210 |
| BstSFI | CTRYAG | 1 cut(s) | 510 |
| BstV1I | GCAGC | 3 cut(s) | 3, 356, 524 |
| BstV2I | GAAGAC | 3 cut(s) | 18, 582, 642 |
| BstX2I | RGATCY | 1 cut(s) | 390 |
| BstYI | RGATCY | 1 cut(s) | 390 |
| Bsu36I | CCTNAGG | 2 cut(s) | 141, 603 |
| BtgZI | GCGATG | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 430 |
| BtsIMutI | CAGTG | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 3 cut(s) | 382, 465, 627 |
| CfoI | GCGC | 1 cut(s) | 160 |
| Cfr10I | RCCGGY | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 1 cut(s) | 479 |
| Csp6I | GTAC | 2 cut(s) | 313, 610 |
| CspAI | ACCGGT | 1 cut(s) | 148 |
| CviAII | CATG | 3 cut(s) | 161, 207, 411 |
| CviJI | RGCY | 7 cut(s) | 16, 83, 88, 445, 463, 515, 625 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 83, 88, 445, 463, 515, 625 |
| CviQI | GTAC | 2 cut(s) | 313, 610 |
| DdeI | CTNAG | 2 cut(s) | 141, 603 |
| DpnI | GATC | 2 cut(s) | 60, 392 |
| DpnII | GATC | 2 cut(s) | 58, 390 |
| DraI | TTTAAA | 1 cut(s) | 571 |
| Eam1104I | CTCTTC | 2 cut(s) | 86, 542 |
| EarI | CTCTTC | 2 cut(s) | 86, 542 |
| Eco47I | GGWCC | 1 cut(s) | 479 |
| Eco57I | CTGAAG | 1 cut(s) | 110 |
| Eco81I | CCTNAGG | 2 cut(s) | 141, 603 |
| EcoRI | GAATTC | 1 cut(s) | 530 |
| EcoT22I | ATGCAT | 1 cut(s) | 267 |
| FaeI | CATG | 3 cut(s) | 164, 210, 414 |
| FaiI | YATR | 7 cut(s) | 127, 129, 162, 208, 366, 368, 412 |
| FatI | CATG | 3 cut(s) | 160, 206, 410 |
| FauNDI | CATATG | 1 cut(s) | 127 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 345, 513 |
| FokI | GGATG | 1 cut(s) | 437 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 345, 513 |
| FspAI | RTGCGCAY | 1 cut(s) | 159 |
| FspBI | CTAG | 2 cut(s) | 84, 654 |
| FspI | TGCGCA | 1 cut(s) | 159 |
| GlaI | GCGC | 1 cut(s) | 159 |
| GluI | GCNGC | 3 cut(s) | 17, 345, 513 |
| HapII | CCGG | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 160 |
| Hin1II | CATG | 3 cut(s) | 164, 210, 414 |
| Hin6I | GCGC | 1 cut(s) | 158 |
| HinP1I | GCGC | 1 cut(s) | 158 |
| HincII | GTYRAC | 2 cut(s) | 102, 329 |
| HindII | GTYRAC | 2 cut(s) | 102, 329 |
| HindIII | AAGCTT | 1 cut(s) | 443 |
| HinfI | GANTC | 4 cut(s) | 188, 431, 452, 550 |
| HpaII | CCGG | 1 cut(s) | 149 |
| HphI | GGTGA | 1 cut(s) | 588 |
| Hpy166II | GTNNAC | 2 cut(s) | 102, 329 |
| Hpy188I | TCNGA | 1 cut(s) | 58 |
| Hpy188III | TCNNGA | 3 cut(s) | 482, 540, 605 |
| Hpy8I | GTNNAC | 2 cut(s) | 102, 329 |
| HpyAV | CCTTC | 1 cut(s) | 232 |
| HpyCH4V | TGCA | 5 cut(s) | 19, 107, 265, 358, 512 |
| HpyF3I | CTNAG | 2 cut(s) | 141, 603 |
| Hsp92II | CATG | 3 cut(s) | 164, 210, 414 |
| HspAI | GCGC | 1 cut(s) | 158 |
| Kzo9I | GATC | 2 cut(s) | 58, 390 |
| LpnPI | CCDG | 7 cut(s) | 162, 449, 495, 553, 590, 611, 619 |
| Lsp1109I | GCAGC | 3 cut(s) | 3, 356, 524 |
| LweI | GCATC | 3 cut(s) | 274, 345, 415 |
| MaeI | CTAG | 2 cut(s) | 84, 654 |
| MalI | GATC | 2 cut(s) | 60, 392 |
| MboI | GATC | 2 cut(s) | 58, 390 |
| MboII | GAAGA | 8 cut(s) | 18, 21, 79, 103, 554, 559, 587, 642 |
| MflI | RGATCY | 1 cut(s) | 390 |
| MluCI | AATT | 2 cut(s) | 530, 554 |
| MlyI | GAGTC | 2 cut(s) | 440, 559 |
| MmeI | TCCRAC | 1 cut(s) | 431 |
| MnlI | CCTC | 5 cut(s) | 57, 270, 342, 604, 612 |
| Mph1103I | ATGCAT | 1 cut(s) | 267 |
| MseI | TTAA | 2 cut(s) | 63, 570 |
| MspCI | CTTAAG | 1 cut(s) | 62 |
| MspI | CCGG | 1 cut(s) | 149 |
| NdeI | CATATG | 1 cut(s) | 127 |
| NdeII | GATC | 2 cut(s) | 58, 390 |
| NlaIII | CATG | 3 cut(s) | 164, 210, 414 |
| NlaIV | GGNNCC | 1 cut(s) | 147 |
| NmeAIII | GCCGAG | 1 cut(s) | 454 |
| NsbI | TGCGCA | 1 cut(s) | 159 |
| NsiI | ATGCAT | 1 cut(s) | 267 |
| NspI | RCATGY | 1 cut(s) | 210 |
| PciI | ACATGT | 1 cut(s) | 206 |
| PfeI | GAWTC | 2 cut(s) | 188, 452 |
| PinAI | ACCGGT | 1 cut(s) | 148 |
| PkrI | GCNGC | 3 cut(s) | 18, 346, 514 |
| PleI | GAGTC | 2 cut(s) | 439, 558 |
| PpsI | GAGTC | 2 cut(s) | 439, 558 |
| PscI | ACATGT | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 1 cut(s) | 147 |
| PspPI | GGNCC | 1 cut(s) | 479 |
| PstI | CTGCAG | 1 cut(s) | 514 |
| PsuI | RGATCY | 1 cut(s) | 390 |
| RsaI | GTAC | 2 cut(s) | 314, 611 |
| RsaNI | GTAC | 2 cut(s) | 313, 610 |
| SaqAI | TTAA | 2 cut(s) | 63, 570 |
| SatI | GCNGC | 3 cut(s) | 17, 345, 513 |
| Sau3AI | GATC | 2 cut(s) | 58, 390 |
| Sau96I | GGNCC | 1 cut(s) | 479 |
| SchI | GAGTC | 2 cut(s) | 440, 559 |
| SetI | ASST | 9 cut(s) | 18, 49, 328, 334, 447, 465, 517, 627, 659 |
| SfaNI | GCATC | 3 cut(s) | 274, 345, 415 |
| SfcI | CTRYAG | 1 cut(s) | 510 |
| SinI | GGWCC | 1 cut(s) | 479 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| Sse9I | AATT | 2 cut(s) | 530, 554 |
| SspMI | CTAG | 2 cut(s) | 84, 654 |
| TaqI | TCGA | 1 cut(s) | 116 |
| TasI | AATT | 2 cut(s) | 530, 554 |
| TatI | WGTACW | 2 cut(s) | 312, 609 |
| TfiI | GAWTC | 2 cut(s) | 188, 452 |
| Tru1I | TTAA | 2 cut(s) | 63, 570 |
| Tru9I | TTAA | 2 cut(s) | 63, 570 |
| TscAI | CASTG | 1 cut(s) | 198 |
| TseI | GCWGC | 3 cut(s) | 16, 344, 512 |
| TspDTI | ATGAA | 4 cut(s) | 177, 201, 333, 607 |
| TspGWI | ACGGA | 1 cut(s) | 351 |
| TspRI | CASTG | 1 cut(s) | 198 |
| Vha464I | CTTAAG | 1 cut(s) | 62 |
| VpaK11BI | GGWCC | 1 cut(s) | 479 |
| XapI | RAATTY | 1 cut(s) | 530 |
| XceI | RCATGY | 1 cut(s) | 210 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 190 |
| XspI | CTAG | 2 cut(s) | 84, 654 |
| Zsp2I | ATGCAT | 1 cut(s) | 267 |