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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 264, 378 |
| AcoI | YGGCCR | 2 cut(s) | 183, 327 |
| AcsI | RAATTY | 2 cut(s) | 52, 205 |
| AcuI | CTGAAG | 1 cut(s) | 384 |
| AfaI | GTAC | 3 cut(s) | 98, 195, 410 |
| AgsI | TTSAA | 2 cut(s) | 349, 394 |
| AjnI | CCWGG | 1 cut(s) | 219 |
| AluBI | AGCT | 7 cut(s) | 175, 212, 251, 308, 322, 398, 428 |
| AluI | AGCT | 7 cut(s) | 175, 212, 251, 308, 322, 398, 428 |
| Alw21I | GWGCWC | 1 cut(s) | 324 |
| AoxI | GGCC | 4 cut(s) | 28, 183, 243, 327 |
| ApeKI | GCWGC | 3 cut(s) | 212, 215, 266 |
| ApoI | RAATTY | 2 cut(s) | 52, 205 |
| AspLEI | GCGC | 1 cut(s) | 111 |
| AspS9I | GGNCC | 1 cut(s) | 358 |
| AvaII | GGWCC | 1 cut(s) | 358 |
| BalI | TGGCCA | 2 cut(s) | 185, 329 |
| BanII | GRGCYC | 1 cut(s) | 324 |
| Bbv12I | GWGCWC | 1 cut(s) | 324 |
| BbvI | GCAGC | 3 cut(s) | 199, 202, 253 |
| BccI | CCATC | 2 cut(s) | 282, 389 |
| BciT130I | CCWGG | 1 cut(s) | 221 |
| BfaI | CTAG | 1 cut(s) | 281 |
| BisI | GCNGC | 4 cut(s) | 213, 216, 264, 267 |
| BlsI | GCNGC | 4 cut(s) | 214, 217, 265, 268 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| Bme18I | GGWCC | 1 cut(s) | 358 |
| BmgT120I | GGNCC | 1 cut(s) | 358 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BmsI | GCATC | 1 cut(s) | 96 |
| Bpu10I | CCTNAGC | 1 cut(s) | 84 |
| BsaJI | CCNNGG | 2 cut(s) | 219, 330 |
| BseBI | CCWGG | 1 cut(s) | 221 |
| BseDI | CCNNGG | 2 cut(s) | 219, 330 |
| BseMII | CTCAG | 1 cut(s) | 378 |
| BseRI | GAGGAG | 1 cut(s) | 368 |
| BseXI | GCAGC | 3 cut(s) | 199, 202, 253 |
| BshFI | GGCC | 4 cut(s) | 30, 185, 245, 329 |
| BsiHKAI | GWGCWC | 1 cut(s) | 324 |
| BsiSI | CCGG | 1 cut(s) | 31 |
| BsnI | GGCC | 4 cut(s) | 30, 185, 245, 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 324 |
| BspACI | CCGC | 2 cut(s) | 264, 378 |
| BspANI | GGCC | 4 cut(s) | 30, 185, 245, 329 |
| BspCNI | CTCAG | 1 cut(s) | 379 |
| BspHI | TCATGA | 1 cut(s) | 237 |
| BssECI | CCNNGG | 2 cut(s) | 219, 330 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst2UI | CCWGG | 1 cut(s) | 221 |
| Bst4CI | ACNGT | 2 cut(s) | 92, 181 |
| BstC8I | GCNNGC | 1 cut(s) | 261 |
| BstDEI | CTNAG | 3 cut(s) | 84, 309, 387 |
| BstHHI | GCGC | 1 cut(s) | 111 |
| BstNI | CCWGG | 1 cut(s) | 221 |
| BstNSI | RCATGY | 1 cut(s) | 263 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 3 cut(s) | 199, 202, 253 |
| BsuRI | GGCC | 4 cut(s) | 30, 185, 245, 329 |
| BtgZI | GCGATG | 2 cut(s) | 367, 397 |
| Cac8I | GCNNGC | 1 cut(s) | 261 |
| CciI | TCATGA | 1 cut(s) | 237 |
| CfoI | GCGC | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 1 cut(s) | 358 |
| Csp6I | GTAC | 3 cut(s) | 97, 194, 409 |
| CviAII | CATG | 5 cut(s) | 115, 238, 260, 325, 421 |
| CviQI | GTAC | 3 cut(s) | 97, 194, 409 |
| DdeI | CTNAG | 3 cut(s) | 84, 309, 387 |
| EaeI | YGGCCR | 2 cut(s) | 183, 327 |
| Ecl136II | GAGCTC | 1 cut(s) | 322 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco24I | GRGCYC | 1 cut(s) | 324 |
| Eco47I | GGWCC | 1 cut(s) | 358 |
| Eco53kI | GAGCTC | 1 cut(s) | 322 |
| Eco57I | CTGAAG | 1 cut(s) | 384 |
| EcoICRI | GAGCTC | 1 cut(s) | 322 |
| EcoRII | CCWGG | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| EcoT38I | GRGCYC | 1 cut(s) | 324 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 5 cut(s) | 118, 241, 263, 328, 424 |
| FatI | CATG | 5 cut(s) | 114, 237, 259, 324, 420 |
| Fnu4HI | GCNGC | 4 cut(s) | 213, 216, 264, 267 |
| FriOI | GRGCYC | 1 cut(s) | 324 |
| Fsp4HI | GCNGC | 4 cut(s) | 213, 216, 264, 267 |
| FspBI | CTAG | 1 cut(s) | 281 |
| GlaI | GCGC | 1 cut(s) | 110 |
| GluI | GCNGC | 4 cut(s) | 213, 216, 264, 267 |
| HaeIII | GGCC | 4 cut(s) | 30, 185, 245, 329 |
| HapII | CCGG | 1 cut(s) | 31 |
| HhaI | GCGC | 1 cut(s) | 111 |
| Hin1II | CATG | 5 cut(s) | 118, 241, 263, 328, 424 |
| Hin6I | GCGC | 1 cut(s) | 109 |
| HinP1I | GCGC | 1 cut(s) | 109 |
| HincII | GTYRAC | 1 cut(s) | 154 |
| HindII | GTYRAC | 1 cut(s) | 154 |
| HindIII | AAGCTT | 1 cut(s) | 396 |
| HinfI | GANTC | 1 cut(s) | 277 |
| HpaII | CCGG | 1 cut(s) | 31 |
| Hpy166II | GTNNAC | 2 cut(s) | 154, 375 |
| Hpy188III | TCNNGA | 3 cut(s) | 238, 274, 281 |
| Hpy8I | GTNNAC | 2 cut(s) | 154, 375 |
| HpyAV | CCTTC | 2 cut(s) | 15, 235 |
| HpyCH4III | ACNGT | 2 cut(s) | 92, 181 |
| HpyCH4V | TGCA | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 309, 387 |
| Hsp92II | CATG | 5 cut(s) | 118, 241, 263, 328, 424 |
| HspAI | GCGC | 1 cut(s) | 109 |
| LpnPI | CCDG | 3 cut(s) | 44, 206, 233 |
| Lsp1109I | GCAGC | 3 cut(s) | 199, 202, 253 |
| LweI | GCATC | 1 cut(s) | 96 |
| MaeI | CTAG | 1 cut(s) | 281 |
| MhlI | GDGCHC | 1 cut(s) | 324 |
| MlsI | TGGCCA | 2 cut(s) | 185, 329 |
| MluCI | AATT | 3 cut(s) | 52, 126, 205 |
| MluNI | TGGCCA | 2 cut(s) | 185, 329 |
| MlyI | GAGTC | 1 cut(s) | 271 |
| MnlI | CCTC | 5 cut(s) | 78, 124, 184, 346, 349 |
| Mox20I | TGGCCA | 2 cut(s) | 185, 329 |
| MscI | TGGCCA | 2 cut(s) | 185, 329 |
| MseI | TTAA | 3 cut(s) | 143, 171, 432 |
| Msp20I | TGGCCA | 2 cut(s) | 185, 329 |
| MspA1I | CMGCKG | 1 cut(s) | 266 |
| MspI | CCGG | 1 cut(s) | 31 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| MvaI | CCWGG | 1 cut(s) | 221 |
| NlaIII | CATG | 5 cut(s) | 118, 241, 263, 328, 424 |
| NmeAIII | GCCGAG | 1 cut(s) | 430 |
| NspI | RCATGY | 1 cut(s) | 263 |
| PaeI | GCATGC | 1 cut(s) | 263 |
| PagI | TCATGA | 1 cut(s) | 237 |
| PkrI | GCNGC | 4 cut(s) | 214, 217, 265, 268 |
| PleI | GAGTC | 1 cut(s) | 271 |
| PpsI | GAGTC | 1 cut(s) | 271 |
| Psp124BI | GAGCTC | 1 cut(s) | 324 |
| Psp6I | CCWGG | 1 cut(s) | 219 |
| PspGI | CCWGG | 1 cut(s) | 219 |
| PspPI | GGNCC | 1 cut(s) | 358 |
| RsaI | GTAC | 3 cut(s) | 98, 195, 410 |
| RsaNI | GTAC | 3 cut(s) | 97, 194, 409 |
| SacI | GAGCTC | 1 cut(s) | 324 |
| SaqAI | TTAA | 3 cut(s) | 143, 171, 432 |
| SatI | GCNGC | 4 cut(s) | 213, 216, 264, 267 |
| Sau96I | GGNCC | 1 cut(s) | 358 |
| SchI | GAGTC | 1 cut(s) | 271 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SduI | GDGCHC | 1 cut(s) | 324 |
| SfaNI | GCATC | 1 cut(s) | 96 |
| SinI | GGWCC | 1 cut(s) | 358 |
| SphI | GCATGC | 1 cut(s) | 263 |
| Sse9I | AATT | 3 cut(s) | 52, 126, 205 |
| SsiI | CCGC | 2 cut(s) | 264, 378 |
| SspMI | CTAG | 1 cut(s) | 281 |
| SstI | GAGCTC | 1 cut(s) | 324 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 2 cut(s) | 92, 181 |
| TasI | AATT | 3 cut(s) | 52, 126, 205 |
| TatI | WGTACW | 1 cut(s) | 408 |
| TauI | GCSGC | 1 cut(s) | 266 |
| Tru1I | TTAA | 3 cut(s) | 143, 171, 432 |
| Tru9I | TTAA | 3 cut(s) | 143, 171, 432 |
| TseI | GCWGC | 3 cut(s) | 212, 215, 266 |
| TspDTI | ATGAA | 2 cut(s) | 226, 254 |
| VpaK11BI | GGWCC | 1 cut(s) | 358 |
| XapI | RAATTY | 2 cut(s) | 52, 205 |
| XbaI | TCTAGA | 1 cut(s) | 280 |
| XceI | RCATGY | 1 cut(s) | 263 |
| XspI | CTAG | 1 cut(s) | 281 |