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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 312 |
| Acc65I | GGTACC | 1 cut(s) | 285 |
| AccB1I | GGYRCC | 2 cut(s) | 88, 285 |
| AccI | GTMKAC | 1 cut(s) | 39 |
| AciI | CCGC | 2 cut(s) | 527, 561 |
| AclWI | GGATC | 1 cut(s) | 226 |
| AcsI | RAATTY | 1 cut(s) | 520 |
| AcuI | CTGAAG | 1 cut(s) | 201 |
| AfaI | GTAC | 3 cut(s) | 278, 287, 566 |
| AgsI | TTSAA | 1 cut(s) | 68 |
| AjnI | CCWGG | 1 cut(s) | 424 |
| AluBI | AGCT | 1 cut(s) | 75 |
| AluI | AGCT | 1 cut(s) | 75 |
| Alw26I | GTCTC | 1 cut(s) | 259 |
| AlwI | GGATC | 1 cut(s) | 226 |
| Ama87I | CYCGRG | 1 cut(s) | 454 |
| AoxI | GGCC | 2 cut(s) | 387, 427 |
| ApaI | GGGCCC | 1 cut(s) | 391 |
| ApeKI | GCWGC | 3 cut(s) | 80, 645, 648 |
| ApoI | RAATTY | 1 cut(s) | 520 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 196, 228 |
| Asp718I | GGTACC | 1 cut(s) | 285 |
| AspS9I | GGNCC | 2 cut(s) | 387, 388 |
| AsuHPI | GGTGA | 2 cut(s) | 143, 718 |
| AvaI | CYCGRG | 1 cut(s) | 454 |
| BaeGI | GKGCMC | 1 cut(s) | 391 |
| BanI | GGYRCC | 2 cut(s) | 88, 285 |
| BanII | GRGCYC | 1 cut(s) | 391 |
| BbsI | GAAGAC | 1 cut(s) | 716 |
| BbvI | GCAGC | 3 cut(s) | 92, 657, 660 |
| BccI | CCATC | 2 cut(s) | 143, 167 |
| BciT130I | CCWGG | 1 cut(s) | 426 |
| BcoDI | GTCTC | 1 cut(s) | 259 |
| BisI | GCNGC | 3 cut(s) | 81, 646, 649 |
| BlsI | GCNGC | 3 cut(s) | 82, 647, 650 |
| Bme1390I | CCNGG | 1 cut(s) | 426 |
| BmeT110I | CYCGRG | 1 cut(s) | 454 |
| BmgT120I | GGNCC | 2 cut(s) | 387, 388 |
| BmiI | GGNNCC | 4 cut(s) | 90, 177, 287, 389 |
| BmrFI | CCNGG | 1 cut(s) | 426 |
| BmsI | GCATC | 2 cut(s) | 105, 564 |
| BpiI | GAAGAC | 1 cut(s) | 716 |
| Bsa29I | ATCGAT | 1 cut(s) | 672 |
| BsaBI | GATNNNNATC | 1 cut(s) | 672 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 548, 578 |
| Bse1I | ACTGG | 1 cut(s) | 298 |
| Bse3DI | GCAATG | 2 cut(s) | 90, 267 |
| Bse8I | GATNNNNATC | 1 cut(s) | 672 |
| BseBI | CCWGG | 1 cut(s) | 426 |
| BseCI | ATCGAT | 1 cut(s) | 672 |
| BseGI | GGATG | 1 cut(s) | 52 |
| BseJI | GATNNNNATC | 1 cut(s) | 672 |
| BseMI | GCAATG | 2 cut(s) | 90, 267 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseNI | ACTGG | 1 cut(s) | 298 |
| BseRI | GAGGAG | 2 cut(s) | 528, 652 |
| BseSI | GKGCMC | 1 cut(s) | 391 |
| BseXI | GCAGC | 3 cut(s) | 92, 657, 660 |
| BshFI | GGCC | 2 cut(s) | 389, 429 |
| BshNI | GGYRCC | 2 cut(s) | 88, 285 |
| BshVI | ATCGAT | 1 cut(s) | 672 |
| BsiHKCI | CYCGRG | 1 cut(s) | 454 |
| BsmAI | GTCTC | 1 cut(s) | 259 |
| BsmI | GAATGC | 1 cut(s) | 531 |
| BsnI | GGCC | 2 cut(s) | 389, 429 |
| BsoBI | CYCGRG | 1 cut(s) | 454 |
| Bsp120I | GGGCCC | 1 cut(s) | 387 |
| Bsp1286I | GDGCHC | 1 cut(s) | 391 |
| Bsp143I | GATC | 2 cut(s) | 218, 673 |
| BspACI | CCGC | 2 cut(s) | 527, 561 |
| BspANI | GGCC | 2 cut(s) | 389, 429 |
| BspCNI | CTCAG | 1 cut(s) | 71 |
| BspDI | ATCGAT | 1 cut(s) | 672 |
| BspLI | GGNNCC | 4 cut(s) | 90, 177, 287, 389 |
| BspPI | GGATC | 1 cut(s) | 226 |
| BspT107I | GGYRCC | 2 cut(s) | 88, 285 |
| BsrDI | GCAATG | 2 cut(s) | 90, 267 |
| BsrI | ACTGG | 1 cut(s) | 298 |
| BssMI | GATC | 2 cut(s) | 218, 673 |
| Bst2UI | CCWGG | 1 cut(s) | 426 |
| Bst4CI | ACNGT | 1 cut(s) | 382 |
| Bst6I | CTCTTC | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 2 cut(s) | 241, 529 |
| BstDEI | CTNAG | 1 cut(s) | 58 |
| BstF5I | GGATG | 1 cut(s) | 52 |
| BstKTI | GATC | 2 cut(s) | 221, 676 |
| BstMAI | GTCTC | 1 cut(s) | 259 |
| BstMBI | GATC | 2 cut(s) | 218, 673 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 86, 583 |
| BstNI | CCWGG | 1 cut(s) | 426 |
| BstNSI | RCATGY | 1 cut(s) | 586 |
| BstSCI | CCNGG | 1 cut(s) | 424 |
| BstSLI | GKGCMC | 1 cut(s) | 391 |
| BstV1I | GCAGC | 3 cut(s) | 92, 657, 660 |
| BstV2I | GAAGAC | 1 cut(s) | 716 |
| Bsu15I | ATCGAT | 1 cut(s) | 672 |
| BsuRI | GGCC | 2 cut(s) | 389, 429 |
| BsuTUI | ATCGAT | 1 cut(s) | 672 |
| BtsCI | GGATG | 1 cut(s) | 52 |
| Cac8I | GCNNGC | 2 cut(s) | 241, 529 |
| Cfr13I | GGNCC | 2 cut(s) | 387, 388 |
| ClaI | ATCGAT | 1 cut(s) | 672 |
| Csp6I | GTAC | 3 cut(s) | 277, 286, 565 |
| CviAII | CATG | 6 cut(s) | 43, 172, 244, 325, 439, 583 |
| CviJI | RGCY | 5 cut(s) | 75, 389, 409, 429, 651 |
| CviKI_1 | RGCY | 5 cut(s) | 75, 389, 409, 429, 651 |
| CviQI | GTAC | 3 cut(s) | 277, 286, 565 |
| DdeI | CTNAG | 1 cut(s) | 58 |
| DpnI | GATC | 2 cut(s) | 220, 675 |
| DpnII | GATC | 2 cut(s) | 218, 673 |
| Eam1104I | CTCTTC | 1 cut(s) | 17 |
| EarI | CTCTTC | 1 cut(s) | 17 |
| Eco24I | GRGCYC | 1 cut(s) | 391 |
| Eco32I | GATATC | 2 cut(s) | 592, 670 |
| Eco57I | CTGAAG | 1 cut(s) | 201 |
| Eco88I | CYCGRG | 1 cut(s) | 454 |
| EcoO109I | RGGNCCY | 1 cut(s) | 387 |
| EcoRII | CCWGG | 1 cut(s) | 424 |
| EcoRV | GATATC | 2 cut(s) | 592, 670 |
| EcoT38I | GRGCYC | 1 cut(s) | 391 |
| FaeI | CATG | 6 cut(s) | 46, 175, 247, 328, 442, 586 |
| FatI | CATG | 6 cut(s) | 42, 171, 243, 324, 438, 582 |
| FauI | CCCGC | 2 cut(s) | 520, 554 |
| FblI | GTMKAC | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 646, 649 |
| FokI | GGATG | 1 cut(s) | 59 |
| FriOI | GRGCYC | 1 cut(s) | 391 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 646, 649 |
| GluI | GCNGC | 3 cut(s) | 81, 646, 649 |
| HaeIII | GGCC | 2 cut(s) | 389, 429 |
| Hin1II | CATG | 6 cut(s) | 46, 175, 247, 328, 442, 586 |
| HincII | GTYRAC | 3 cut(s) | 40, 303, 340 |
| HindII | GTYRAC | 3 cut(s) | 40, 303, 340 |
| HinfI | GANTC | 3 cut(s) | 56, 104, 134 |
| HphI | GGTGA | 2 cut(s) | 143, 718 |
| Hpy166II | GTNNAC | 5 cut(s) | 40, 277, 303, 322, 340 |
| Hpy188I | TCNGA | 3 cut(s) | 61, 223, 501 |
| Hpy188III | TCNNGA | 3 cut(s) | 198, 258, 348 |
| Hpy8I | GTNNAC | 5 cut(s) | 40, 277, 303, 322, 340 |
| HpyAV | CCTTC | 2 cut(s) | 354, 487 |
| HpyCH4III | ACNGT | 1 cut(s) | 382 |
| HpyCH4IV | ACGT | 1 cut(s) | 713 |
| HpyCH4V | TGCA | 5 cut(s) | 140, 239, 267, 332, 461 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 86, 583 |
| HpyF3I | CTNAG | 1 cut(s) | 58 |
| HpySE526I | ACGT | 1 cut(s) | 713 |
| Hsp92II | CATG | 6 cut(s) | 46, 175, 247, 328, 442, 586 |
| KpnI | GGTACC | 1 cut(s) | 289 |
| Kzo9I | GATC | 2 cut(s) | 218, 673 |
| LpnPI | CCDG | 7 cut(s) | 114, 192, 243, 293, 311, 411, 438 |
| Lsp1109I | GCAGC | 3 cut(s) | 92, 657, 660 |
| LweI | GCATC | 2 cut(s) | 105, 564 |
| MaeII | ACGT | 1 cut(s) | 713 |
| MalI | GATC | 2 cut(s) | 220, 675 |
| MboI | GATC | 2 cut(s) | 218, 673 |
| MboII | GAAGA | 5 cut(s) | 34, 499, 502, 677, 721 |
| MhlI | GDGCHC | 1 cut(s) | 391 |
| MluCI | AATT | 4 cut(s) | 68, 262, 351, 520 |
| MlyI | GAGTC | 2 cut(s) | 50, 143 |
| MmeI | TCCRAC | 1 cut(s) | 479 |
| MnlI | CCTC | 9 cut(s) | 18, 55, 276, 378, 546, 549, 592, 630, 635 |
| MseI | TTAA | 2 cut(s) | 110, 474 |
| MslI | CAYNNNNRTG | 1 cut(s) | 272 |
| MspR9I | CCNGG | 1 cut(s) | 426 |
| Mva1269I | GAATGC | 1 cut(s) | 531 |
| MvaI | CCWGG | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 86, 583 |
| NdeII | GATC | 2 cut(s) | 218, 673 |
| NlaIII | CATG | 6 cut(s) | 46, 175, 247, 328, 442, 586 |
| NlaIV | GGNNCC | 4 cut(s) | 90, 177, 287, 389 |
| NspI | RCATGY | 1 cut(s) | 586 |
| PctI | GAATGC | 1 cut(s) | 531 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 3 cut(s) | 82, 647, 650 |
| PleI | GAGTC | 2 cut(s) | 50, 142 |
| PpsI | GAGTC | 2 cut(s) | 50, 142 |
| PsiI | TTATAA | 1 cut(s) | 312 |
| Psp6I | CCWGG | 1 cut(s) | 424 |
| PspGI | CCWGG | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 4 cut(s) | 90, 177, 287, 389 |
| PspOMI | GGGCCC | 1 cut(s) | 387 |
| PspPI | GGNCC | 2 cut(s) | 387, 388 |
| RsaI | GTAC | 3 cut(s) | 278, 287, 566 |
| RsaNI | GTAC | 3 cut(s) | 277, 286, 565 |
| RseI | CAYNNNNRTG | 1 cut(s) | 272 |
| SalI | GTCGAC | 1 cut(s) | 38 |
| SaqAI | TTAA | 2 cut(s) | 110, 474 |
| SatI | GCNGC | 3 cut(s) | 81, 646, 649 |
| Sau3AI | GATC | 2 cut(s) | 218, 673 |
| Sau96I | GGNCC | 2 cut(s) | 387, 388 |
| SchI | GAGTC | 2 cut(s) | 50, 143 |
| ScrFI | CCNGG | 1 cut(s) | 426 |
| SduI | GDGCHC | 1 cut(s) | 391 |
| SetI | ASST | 6 cut(s) | 66, 77, 181, 287, 291, 716 |
| SfaNI | GCATC | 2 cut(s) | 105, 564 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 272 |
| Sse9I | AATT | 4 cut(s) | 68, 262, 351, 520 |
| SsiI | CCGC | 2 cut(s) | 527, 561 |
| StyD4I | CCNGG | 1 cut(s) | 424 |
| TaaI | ACNGT | 1 cut(s) | 382 |
| TaiI | ACGT | 1 cut(s) | 716 |
| TaqI | TCGA | 3 cut(s) | 39, 199, 672 |
| TasI | AATT | 4 cut(s) | 68, 262, 351, 520 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 2 cut(s) | 110, 474 |
| Tru9I | TTAA | 2 cut(s) | 110, 474 |
| TseI | GCWGC | 3 cut(s) | 80, 645, 648 |
| TspDTI | ATGAA | 3 cut(s) | 63, 157, 427 |
| XapI | RAATTY | 1 cut(s) | 520 |
| XceI | RCATGY | 1 cut(s) | 586 |
| XmiI | GTMKAC | 1 cut(s) | 39 |