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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 94 |
| AccB1I | GGYRCC | 2 cut(s) | 94, 478 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 461 |
| AclWI | GGATC | 3 cut(s) | 545, 558, 778 |
| AcoI | YGGCCR | 1 cut(s) | 20 |
| AcsI | RAATTY | 1 cut(s) | 776 |
| AcuI | CTGAAG | 1 cut(s) | 137 |
| AfaI | GTAC | 2 cut(s) | 96, 326 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 388, 461, 561, 772 |
| AflIII | ACRYGT | 1 cut(s) | 327 |
| AgsI | TTSAA | 2 cut(s) | 151, 689 |
| AjnI | CCWGG | 1 cut(s) | 460 |
| AleI | CACNNNNGTG | 1 cut(s) | 435 |
| AluBI | AGCT | 4 cut(s) | 181, 402, 469, 568 |
| AluI | AGCT | 4 cut(s) | 181, 402, 469, 568 |
| Alw21I | GWGCWC | 1 cut(s) | 183 |
| Alw26I | GTCTC | 3 cut(s) | 55, 723, 737 |
| AlwI | GGATC | 3 cut(s) | 545, 558, 778 |
| AoxI | GGCC | 2 cut(s) | 20, 641 |
| ApeKI | GCWGC | 1 cut(s) | 565 |
| ApoI | RAATTY | 1 cut(s) | 776 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 736, 768 |
| Asp718I | GGTACC | 1 cut(s) | 94 |
| AspA2I | CCTAGG | 1 cut(s) | 712 |
| AspS9I | GGNCC | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 1 cut(s) | 45 |
| AvaII | GGWCC | 1 cut(s) | 25 |
| AvrII | CCTAGG | 1 cut(s) | 712 |
| AxyI | CCTNAGG | 2 cut(s) | 219, 557 |
| BamHI | GGATCC | 1 cut(s) | 550 |
| BanI | GGYRCC | 2 cut(s) | 94, 478 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| Bbv12I | GWGCWC | 1 cut(s) | 183 |
| BbvI | GCAGC | 1 cut(s) | 577 |
| BccI | CCATC | 1 cut(s) | 36 |
| BciT130I | CCWGG | 1 cut(s) | 462 |
| BciVI | GTATCC | 1 cut(s) | 224 |
| BcoDI | GTCTC | 3 cut(s) | 55, 723, 737 |
| BfaI | CTAG | 2 cut(s) | 441, 713 |
| BfmI | CTRYAG | 1 cut(s) | 573 |
| BfuI | GTATCC | 1 cut(s) | 224 |
| BisI | GCNGC | 1 cut(s) | 566 |
| BlnI | CCTAGG | 1 cut(s) | 712 |
| BlsI | GCNGC | 1 cut(s) | 567 |
| Bme1390I | CCNGG | 1 cut(s) | 462 |
| Bme18I | GGWCC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 4 cut(s) | 96, 480, 522, 552 |
| BmrFI | CCNGG | 1 cut(s) | 462 |
| BmrI | ACTGGG | 1 cut(s) | 306 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BmuI | ACTGGG | 1 cut(s) | 306 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 3 cut(s) | 579, 673, 712 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 734, 764 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 388, 461, 561, 772 |
| Bse1I | ACTGG | 2 cut(s) | 145, 301 |
| Bse21I | CCTNAGG | 2 cut(s) | 219, 557 |
| BseBI | CCWGG | 1 cut(s) | 462 |
| BseDI | CCNNGG | 3 cut(s) | 579, 673, 712 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 388, 461, 561, 772 |
| BseMII | CTCAG | 4 cut(s) | 83, 210, 504, 548 |
| BseNI | ACTGG | 2 cut(s) | 145, 301 |
| BseRI | GAGGAG | 2 cut(s) | 574, 741 |
| BseXI | GCAGC | 1 cut(s) | 577 |
| BsgI | GTGCAG | 1 cut(s) | 192 |
| BshFI | GGCC | 2 cut(s) | 22, 643 |
| BshNI | GGYRCC | 2 cut(s) | 94, 478 |
| BsiHKAI | GWGCWC | 1 cut(s) | 183 |
| BsiSI | CCGG | 2 cut(s) | 23, 524 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 388, 461, 561, 772 |
| BsmAI | GTCTC | 3 cut(s) | 55, 723, 737 |
| BsmBI | CGTCTC | 1 cut(s) | 737 |
| BsnI | GGCC | 2 cut(s) | 22, 643 |
| Bsp1286I | GDGCHC | 1 cut(s) | 183 |
| Bsp143I | GATC | 4 cut(s) | 291, 493, 550, 783 |
| BspANI | GGCC | 2 cut(s) | 22, 643 |
| BspCNI | CTCAG | 4 cut(s) | 82, 211, 503, 549 |
| BspLI | GGNNCC | 4 cut(s) | 96, 480, 522, 552 |
| BspPI | GGATC | 3 cut(s) | 545, 558, 778 |
| BspT107I | GGYRCC | 2 cut(s) | 94, 478 |
| BsrI | ACTGG | 2 cut(s) | 145, 301 |
| BssECI | CCNNGG | 3 cut(s) | 579, 673, 712 |
| BssMI | GATC | 4 cut(s) | 291, 493, 550, 783 |
| BssT1I | CCWWGG | 2 cut(s) | 673, 712 |
| Bst2UI | CCWGG | 1 cut(s) | 462 |
| Bst4CI | ACNGT | 3 cut(s) | 412, 514, 721 |
| Bst6I | CTCTTC | 1 cut(s) | 71 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 2 cut(s) | 280, 641 |
| BstDEI | CTNAG | 4 cut(s) | 69, 219, 490, 557 |
| BstKTI | GATC | 4 cut(s) | 294, 496, 553, 786 |
| BstMAI | GTCTC | 3 cut(s) | 55, 723, 737 |
| BstMBI | GATC | 4 cut(s) | 291, 493, 550, 783 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 134, 645, 754 |
| BstNI | CCWGG | 1 cut(s) | 462 |
| BstNSI | RCATGY | 1 cut(s) | 331 |
| BstSCI | CCNGG | 1 cut(s) | 460 |
| BstSFI | CTRYAG | 1 cut(s) | 573 |
| BstV1I | GCAGC | 1 cut(s) | 577 |
| BstX2I | RGATCY | 2 cut(s) | 550, 783 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 358 |
| BstYI | RGATCY | 2 cut(s) | 550, 783 |
| Bsu36I | CCTNAGG | 2 cut(s) | 219, 557 |
| BsuI | GTATCC | 1 cut(s) | 224 |
| BsuRI | GGCC | 2 cut(s) | 22, 643 |
| BtsIMutI | CAGTG | 2 cut(s) | 294, 717 |
| Cac8I | GCNNGC | 2 cut(s) | 280, 641 |
| Cfr13I | GGNCC | 1 cut(s) | 25 |
| CseI | GACGC | 1 cut(s) | 754 |
| Csp6I | GTAC | 2 cut(s) | 95, 325 |
| CviAII | CATG | 7 cut(s) | 18, 163, 246, 283, 328, 475, 547 |
| CviQI | GTAC | 2 cut(s) | 95, 325 |
| DdeI | CTNAG | 4 cut(s) | 69, 219, 490, 557 |
| DpnI | GATC | 4 cut(s) | 293, 495, 552, 785 |
| DpnII | GATC | 4 cut(s) | 291, 493, 550, 783 |
| EaeI | YGGCCR | 1 cut(s) | 20 |
| Eam1104I | CTCTTC | 1 cut(s) | 71 |
| EarI | CTCTTC | 1 cut(s) | 71 |
| Ecl136II | GAGCTC | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 2 cut(s) | 673, 712 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco47I | GGWCC | 1 cut(s) | 25 |
| Eco53kI | GAGCTC | 1 cut(s) | 181 |
| Eco57I | CTGAAG | 1 cut(s) | 137 |
| Eco81I | CCTNAGG | 2 cut(s) | 219, 557 |
| EcoICRI | GAGCTC | 1 cut(s) | 181 |
| EcoRII | CCWGG | 1 cut(s) | 460 |
| EcoT14I | CCWWGG | 2 cut(s) | 673, 712 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| ErhI | CCWWGG | 2 cut(s) | 673, 712 |
| Esp3I | CGTCTC | 1 cut(s) | 737 |
| FaeI | CATG | 7 cut(s) | 21, 166, 249, 286, 331, 478, 550 |
| FatI | CATG | 7 cut(s) | 17, 162, 245, 282, 327, 474, 546 |
| Fnu4HI | GCNGC | 1 cut(s) | 566 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| Fsp4HI | GCNGC | 1 cut(s) | 566 |
| FspBI | CTAG | 2 cut(s) | 441, 713 |
| GluI | GCNGC | 1 cut(s) | 566 |
| HaeIII | GGCC | 2 cut(s) | 22, 643 |
| HapII | CCGG | 2 cut(s) | 23, 524 |
| HgaI | GACGC | 1 cut(s) | 754 |
| Hin1II | CATG | 7 cut(s) | 21, 166, 249, 286, 331, 478, 550 |
| HincII | GTYRAC | 1 cut(s) | 379 |
| HindII | GTYRAC | 1 cut(s) | 379 |
| HinfI | GANTC | 2 cut(s) | 196, 257 |
| HpaII | CCGG | 2 cut(s) | 23, 524 |
| HphI | GGTGA | 1 cut(s) | 45 |
| Hpy166II | GTNNAC | 1 cut(s) | 379 |
| Hpy188I | TCNGA | 5 cut(s) | 72, 240, 262, 493, 783 |
| Hpy188III | TCNNGA | 3 cut(s) | 103, 200, 340 |
| Hpy8I | GTNNAC | 1 cut(s) | 379 |
| HpyAV | CCTTC | 4 cut(s) | 112, 692, 729, 733 |
| HpyCH4III | ACNGT | 3 cut(s) | 412, 514, 721 |
| HpyCH4V | TGCA | 7 cut(s) | 128, 137, 173, 268, 306, 611, 656 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 134, 645, 754 |
| HpyF3I | CTNAG | 4 cut(s) | 69, 219, 490, 557 |
| Hsp92II | CATG | 7 cut(s) | 21, 166, 249, 286, 331, 478, 550 |
| KpnI | GGTACC | 1 cut(s) | 98 |
| Kzo9I | GATC | 4 cut(s) | 291, 493, 550, 783 |
| LmnI | GCTCC | 2 cut(s) | 61, 520 |
| Lsp1109I | GCAGC | 1 cut(s) | 577 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 2 cut(s) | 441, 713 |
| MalI | GATC | 4 cut(s) | 293, 495, 552, 785 |
| MboI | GATC | 4 cut(s) | 291, 493, 550, 783 |
| MboII | GAAGA | 6 cut(s) | 85, 88, 163, 679, 701, 704 |
| MflI | RGATCY | 2 cut(s) | 550, 783 |
| MhlI | GDGCHC | 1 cut(s) | 183 |
| MluCI | AATT | 2 cut(s) | 769, 776 |
| MlyI | GAGTC | 1 cut(s) | 205 |
| MmeI | TCCRAC | 1 cut(s) | 373 |
| MnlI | CCTC | 9 cut(s) | 72, 78, 83, 214, 552, 555, 589, 676, 719 |
| MseI | TTAA | 1 cut(s) | 132 |
| MslI | CAYNNNNRTG | 2 cut(s) | 353, 435 |
| MspI | CCGG | 2 cut(s) | 23, 524 |
| MspR9I | CCNGG | 1 cut(s) | 462 |
| MvaI | CCWGG | 1 cut(s) | 462 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 134, 645, 754 |
| NdeII | GATC | 4 cut(s) | 291, 493, 550, 783 |
| NlaIII | CATG | 7 cut(s) | 21, 166, 249, 286, 331, 478, 550 |
| NlaIV | GGNNCC | 4 cut(s) | 96, 480, 522, 552 |
| NmeAIII | GCCGAG | 1 cut(s) | 560 |
| NspI | RCATGY | 1 cut(s) | 331 |
| OliI | CACNNNNGTG | 1 cut(s) | 435 |
| PciI | ACATGT | 1 cut(s) | 327 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 461 |
| PkrI | GCNGC | 1 cut(s) | 567 |
| PleI | GAGTC | 1 cut(s) | 204 |
| PpsI | GAGTC | 1 cut(s) | 204 |
| PscI | ACATGT | 1 cut(s) | 327 |
| Psp124BI | GAGCTC | 1 cut(s) | 183 |
| Psp6I | CCWGG | 1 cut(s) | 460 |
| PspGI | CCWGG | 1 cut(s) | 460 |
| PspN4I | GGNNCC | 4 cut(s) | 96, 480, 522, 552 |
| PspPI | GGNCC | 1 cut(s) | 25 |
| PsuI | RGATCY | 2 cut(s) | 550, 783 |
| RsaI | GTAC | 2 cut(s) | 96, 326 |
| RsaNI | GTAC | 2 cut(s) | 95, 325 |
| RseI | CAYNNNNRTG | 2 cut(s) | 353, 435 |
| SacI | GAGCTC | 1 cut(s) | 183 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 1 cut(s) | 566 |
| Sau3AI | GATC | 4 cut(s) | 291, 493, 550, 783 |
| Sau96I | GGNCC | 1 cut(s) | 25 |
| SchI | GAGTC | 1 cut(s) | 205 |
| ScrFI | CCNGG | 1 cut(s) | 462 |
| SduI | GDGCHC | 1 cut(s) | 183 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SfcI | CTRYAG | 1 cut(s) | 573 |
| SinI | GGWCC | 1 cut(s) | 25 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 353, 435 |
| SmlI | CTYRAG | 1 cut(s) | 200 |
| SmoI | CTYRAG | 1 cut(s) | 200 |
| Sse9I | AATT | 2 cut(s) | 769, 776 |
| SspMI | CTAG | 2 cut(s) | 441, 713 |
| SstI | GAGCTC | 1 cut(s) | 183 |
| StyD4I | CCNGG | 1 cut(s) | 460 |
| StyI | CCWWGG | 2 cut(s) | 673, 712 |
| TaaI | ACNGT | 3 cut(s) | 412, 514, 721 |
| TaqI | TCGA | 1 cut(s) | 102 |
| TasI | AATT | 2 cut(s) | 769, 776 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 2 cut(s) | 301, 724 |
| TseI | GCWGC | 1 cut(s) | 565 |
| TspDTI | ATGAA | 4 cut(s) | 151, 436, 463, 711 |
| TspRI | CASTG | 2 cut(s) | 301, 724 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 1 cut(s) | 25 |
| XapI | RAATTY | 1 cut(s) | 776 |
| XceI | RCATGY | 1 cut(s) | 331 |
| XmaJI | CCTAGG | 1 cut(s) | 712 |
| XspI | CTAG | 2 cut(s) | 441, 713 |