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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 663 |
| Acc65I | GGTACC | 1 cut(s) | 636 |
| AccB1I | GGYRCC | 2 cut(s) | 439, 636 |
| AccII | CGCG | 1 cut(s) | 230 |
| AciI | CCGC | 2 cut(s) | 228, 912 |
| AclWI | GGATC | 2 cut(s) | 158, 171 |
| AcoI | YGGCCR | 1 cut(s) | 429 |
| AcsI | RAATTY | 2 cut(s) | 419, 871 |
| AcuI | CTGAAG | 1 cut(s) | 552 |
| AfaI | GTAC | 2 cut(s) | 638, 917 |
| AflIII | ACRYGT | 1 cut(s) | 960 |
| AgsI | TTSAA | 6 cut(s) | 125, 278, 419, 463, 496, 655 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 60 |
| AjnI | CCWGG | 2 cut(s) | 775, 1011 |
| AleI | CACNNNNGTG | 1 cut(s) | 1067 |
| AluBI | AGCT | 3 cut(s) | 89, 368, 455 |
| AluI | AGCT | 3 cut(s) | 89, 368, 455 |
| Alw21I | GWGCWC | 1 cut(s) | 1074 |
| Alw44I | GTGCAC | 1 cut(s) | 1070 |
| AlwI | GGATC | 2 cut(s) | 158, 171 |
| AoxI | GGCC | 3 cut(s) | 314, 429, 738 |
| ApaLI | GTGCAC | 1 cut(s) | 1070 |
| ApeKI | GCWGC | 1 cut(s) | 793 |
| ApoI | RAATTY | 2 cut(s) | 419, 871 |
| Asp718I | GGTACC | 1 cut(s) | 636 |
| AspLEI | GCGC | 1 cut(s) | 232 |
| AspS9I | GGNCC | 1 cut(s) | 739 |
| AsuHPI | GGTGA | 1 cut(s) | 494 |
| BaeGI | GKGCMC | 1 cut(s) | 1074 |
| BalI | TGGCCA | 1 cut(s) | 431 |
| BamHI | GGATCC | 1 cut(s) | 163 |
| BanI | GGYRCC | 2 cut(s) | 439, 636 |
| BauI | CACGAG | 1 cut(s) | 1073 |
| Bbv12I | GWGCWC | 1 cut(s) | 1074 |
| BbvCI | CCTCAGC | 1 cut(s) | 90 |
| BbvI | GCAGC | 1 cut(s) | 780 |
| BccI | CCATC | 4 cut(s) | 194, 227, 451, 494 |
| BciT130I | CCWGG | 2 cut(s) | 777, 1013 |
| BclI | TGATCA | 1 cut(s) | 1024 |
| BfaI | CTAG | 3 cut(s) | 194, 326, 897 |
| BfmI | CTRYAG | 1 cut(s) | 339 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 437 |
| BisI | GCNGC | 2 cut(s) | 228, 794 |
| BlsI | GCNGC | 2 cut(s) | 229, 795 |
| Bme1390I | CCNGG | 2 cut(s) | 777, 1013 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 1 cut(s) | 739 |
| BmiI | GGNNCC | 5 cut(s) | 18, 165, 441, 528, 638 |
| BmrFI | CCNGG | 2 cut(s) | 777, 1013 |
| BmsI | GCATC | 2 cut(s) | 48, 478 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaBI | GATNNNNATC | 2 cut(s) | 8, 1023 |
| BsaJI | CCNNGG | 3 cut(s) | 357, 776, 1011 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 899, 929, 982, 1012 |
| Bse1I | ACTGG | 1 cut(s) | 613 |
| Bse3DI | GCAATG | 2 cut(s) | 300, 618 |
| Bse8I | GATNNNNATC | 2 cut(s) | 8, 1023 |
| BseBI | CCWGG | 2 cut(s) | 777, 1013 |
| BseDI | CCNNGG | 3 cut(s) | 357, 776, 1011 |
| BseGI | GGATG | 2 cut(s) | 205, 493 |
| BseJI | GATNNNNATC | 2 cut(s) | 8, 1023 |
| BseMI | GCAATG | 2 cut(s) | 300, 618 |
| BseMII | CTCAG | 2 cut(s) | 81, 819 |
| BseNI | ACTGG | 1 cut(s) | 613 |
| BseRI | GAGGAG | 3 cut(s) | 44, 251, 1003 |
| BseSI | GKGCMC | 1 cut(s) | 1074 |
| BseXI | GCAGC | 1 cut(s) | 780 |
| Bsh1236I | CGCG | 1 cut(s) | 230 |
| BshFI | GGCC | 3 cut(s) | 316, 431, 740 |
| BshNI | GGYRCC | 2 cut(s) | 439, 636 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1074 |
| BsiSI | CCGG | 1 cut(s) | 20 |
| BsmI | GAATGC | 2 cut(s) | 491, 882 |
| BsnI | GGCC | 3 cut(s) | 316, 431, 740 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1074 |
| Bsp143I | GATC | 2 cut(s) | 163, 1024 |
| BspACI | CCGC | 2 cut(s) | 228, 912 |
| BspANI | GGCC | 3 cut(s) | 316, 431, 740 |
| BspCNI | CTCAG | 2 cut(s) | 82, 818 |
| BspFNI | CGCG | 1 cut(s) | 230 |
| BspHI | TCATGA | 1 cut(s) | 1079 |
| BspLI | GGNNCC | 5 cut(s) | 18, 165, 441, 528, 638 |
| BspMAI | CTGCAG | 1 cut(s) | 343 |
| BspPI | GGATC | 2 cut(s) | 158, 171 |
| BspT107I | GGYRCC | 2 cut(s) | 439, 636 |
| BsrDI | GCAATG | 2 cut(s) | 300, 618 |
| BsrI | ACTGG | 1 cut(s) | 613 |
| BssECI | CCNNGG | 3 cut(s) | 357, 776, 1011 |
| BssMI | GATC | 2 cut(s) | 163, 1024 |
| BssSI | CACGAG | 1 cut(s) | 1073 |
| BssT1I | CCWWGG | 1 cut(s) | 357 |
| Bst2BI | CACGAG | 1 cut(s) | 1073 |
| Bst2UI | CCWGG | 2 cut(s) | 777, 1013 |
| Bst4CI | ACNGT | 3 cut(s) | 148, 283, 733 |
| Bst6I | CTCTTC | 1 cut(s) | 396 |
| BstC8I | GCNNGC | 3 cut(s) | 291, 453, 880 |
| BstDEI | CTNAG | 2 cut(s) | 90, 805 |
| BstF5I | GGATG | 2 cut(s) | 205, 493 |
| BstFNI | CGCG | 1 cut(s) | 230 |
| BstHHI | GCGC | 1 cut(s) | 232 |
| BstKTI | GATC | 2 cut(s) | 166, 1027 |
| BstMBI | GATC | 2 cut(s) | 163, 1024 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 437 |
| BstNI | CCWGG | 2 cut(s) | 777, 1013 |
| BstNSI | RCATGY | 1 cut(s) | 964 |
| BstSCI | CCNGG | 2 cut(s) | 775, 1011 |
| BstSFI | CTRYAG | 1 cut(s) | 339 |
| BstSLI | GKGCMC | 1 cut(s) | 1074 |
| BstUI | CGCG | 1 cut(s) | 230 |
| BstV1I | GCAGC | 1 cut(s) | 780 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 151 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| BsuRI | GGCC | 3 cut(s) | 316, 431, 740 |
| BtsCI | GGATG | 2 cut(s) | 205, 493 |
| BtsIMutI | CAGTG | 2 cut(s) | 144, 288 |
| Cac8I | GCNNGC | 3 cut(s) | 291, 453, 880 |
| CciI | TCATGA | 1 cut(s) | 1079 |
| CfoI | GCGC | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 1 cut(s) | 739 |
| CseI | GACGC | 1 cut(s) | 50 |
| Csp6I | GTAC | 2 cut(s) | 637, 916 |
| CviAII | CATG | 9 cut(s) | 182, 312, 523, 676, 790, 925, 934, 961, 1080 |
| CviQI | GTAC | 2 cut(s) | 637, 916 |
| DdeI | CTNAG | 2 cut(s) | 90, 805 |
| DpnI | GATC | 2 cut(s) | 165, 1026 |
| DpnII | GATC | 2 cut(s) | 163, 1024 |
| DriI | GACNNNNNGTC | 1 cut(s) | 60 |
| EaeI | YGGCCR | 1 cut(s) | 429 |
| Eam1104I | CTCTTC | 1 cut(s) | 396 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 60 |
| EarI | CTCTTC | 1 cut(s) | 396 |
| Eco130I | CCWWGG | 1 cut(s) | 357 |
| Eco32I | GATATC | 2 cut(s) | 10, 943 |
| Eco57I | CTGAAG | 1 cut(s) | 552 |
| EcoRII | CCWGG | 2 cut(s) | 775, 1011 |
| EcoRV | GATATC | 2 cut(s) | 10, 943 |
| EcoT14I | CCWWGG | 1 cut(s) | 357 |
| EcoT22I | ATGCAT | 2 cut(s) | 493, 819 |
| ErhI | CCWWGG | 1 cut(s) | 357 |
| FaeI | CATG | 9 cut(s) | 185, 315, 526, 679, 793, 928, 937, 964, 1083 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 744, 776 |
| FatI | CATG | 9 cut(s) | 181, 311, 522, 675, 789, 924, 933, 960, 1079 |
| FauI | CCCGC | 1 cut(s) | 905 |
| FauNDI | CATATG | 2 cut(s) | 819, 1066 |
| FbaI | TGATCA | 1 cut(s) | 1024 |
| Fnu4HI | GCNGC | 2 cut(s) | 228, 794 |
| FokI | GGATG | 2 cut(s) | 212, 500 |
| Fsp4HI | GCNGC | 2 cut(s) | 228, 794 |
| FspBI | CTAG | 3 cut(s) | 194, 326, 897 |
| GlaI | GCGC | 1 cut(s) | 231 |
| GluI | GCNGC | 2 cut(s) | 228, 794 |
| HaeIII | GGCC | 3 cut(s) | 316, 431, 740 |
| HapII | CCGG | 1 cut(s) | 20 |
| HgaI | GACGC | 1 cut(s) | 50 |
| HhaI | GCGC | 1 cut(s) | 232 |
| Hin1II | CATG | 9 cut(s) | 185, 315, 526, 679, 793, 928, 937, 964, 1083 |
| Hin6I | GCGC | 1 cut(s) | 230 |
| HinP1I | GCGC | 1 cut(s) | 230 |
| HincII | GTYRAC | 3 cut(s) | 65, 691, 1060 |
| HindII | GTYRAC | 3 cut(s) | 65, 691, 1060 |
| HinfI | GANTC | 2 cut(s) | 407, 1076 |
| HpaII | CCGG | 1 cut(s) | 20 |
| HphI | GGTGA | 1 cut(s) | 494 |
| Hpy166II | GTNNAC | 4 cut(s) | 65, 691, 1060, 1072 |
| Hpy188I | TCNGA | 3 cut(s) | 412, 832, 852 |
| Hpy188III | TCNNGA | 2 cut(s) | 346, 1080 |
| Hpy8I | GTNNAC | 4 cut(s) | 65, 691, 1060, 1072 |
| HpyAV | CCTTC | 4 cut(s) | 177, 649, 705, 984 |
| HpyCH4III | ACNGT | 3 cut(s) | 148, 283, 733 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 7 cut(s) | 102, 341, 491, 590, 618, 817, 1072 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 437 |
| HpyF3I | CTNAG | 2 cut(s) | 90, 805 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92II | CATG | 9 cut(s) | 185, 315, 526, 679, 793, 928, 937, 964, 1083 |
| HspAI | GCGC | 1 cut(s) | 230 |
| KpnI | GGTACC | 1 cut(s) | 640 |
| Ksp22I | TGATCA | 1 cut(s) | 1024 |
| Kzo9I | GATC | 2 cut(s) | 163, 1024 |
| LmnI | GCTCC | 2 cut(s) | 16, 526 |
| Lsp1109I | GCAGC | 1 cut(s) | 780 |
| LweI | GCATC | 2 cut(s) | 48, 478 |
| MaeI | CTAG | 3 cut(s) | 194, 326, 897 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MaeIII | GTNAC | 2 cut(s) | 604, 763 |
| MalI | GATC | 2 cut(s) | 165, 1026 |
| MboI | GATC | 2 cut(s) | 163, 1024 |
| MboII | GAAGA | 4 cut(s) | 388, 391, 413, 475 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MhlI | GDGCHC | 1 cut(s) | 1074 |
| MlsI | TGGCCA | 1 cut(s) | 431 |
| MluCI | AATT | 4 cut(s) | 273, 419, 434, 871 |
| MluNI | TGGCCA | 1 cut(s) | 431 |
| MlyI | GAGTC | 1 cut(s) | 401 |
| Mox20I | TGGCCA | 1 cut(s) | 431 |
| Mph1103I | ATGCAT | 2 cut(s) | 493, 819 |
| MscI | TGGCCA | 1 cut(s) | 431 |
| MseI | TTAA | 1 cut(s) | 74 |
| MslI | CAYNNNNRTG | 3 cut(s) | 149, 623, 1067 |
| Msp20I | TGGCCA | 1 cut(s) | 431 |
| MspI | CCGG | 1 cut(s) | 20 |
| MspR9I | CCNGG | 2 cut(s) | 777, 1013 |
| Mva1269I | GAATGC | 2 cut(s) | 491, 882 |
| MvaI | CCWGG | 2 cut(s) | 777, 1013 |
| MvnI | CGCG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 437 |
| NdeI | CATATG | 2 cut(s) | 819, 1066 |
| NdeII | GATC | 2 cut(s) | 163, 1024 |
| NlaIII | CATG | 9 cut(s) | 185, 315, 526, 679, 793, 928, 937, 964, 1083 |
| NlaIV | GGNNCC | 5 cut(s) | 18, 165, 441, 528, 638 |
| NsiI | ATGCAT | 2 cut(s) | 493, 819 |
| NspI | RCATGY | 1 cut(s) | 964 |
| OliI | CACNNNNGTG | 1 cut(s) | 1067 |
| PagI | TCATGA | 1 cut(s) | 1079 |
| PciI | ACATGT | 1 cut(s) | 960 |
| PctI | GAATGC | 2 cut(s) | 491, 882 |
| PkrI | GCNGC | 2 cut(s) | 229, 795 |
| PleI | GAGTC | 1 cut(s) | 401 |
| PpsI | GAGTC | 1 cut(s) | 401 |
| PscI | ACATGT | 1 cut(s) | 960 |
| PsiI | TTATAA | 1 cut(s) | 663 |
| Psp6I | CCWGG | 2 cut(s) | 775, 1011 |
| PspGI | CCWGG | 2 cut(s) | 775, 1011 |
| PspN4I | GGNNCC | 5 cut(s) | 18, 165, 441, 528, 638 |
| PspPI | GGNCC | 1 cut(s) | 739 |
| PstI | CTGCAG | 1 cut(s) | 343 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| RsaI | GTAC | 2 cut(s) | 638, 917 |
| RsaNI | GTAC | 2 cut(s) | 637, 916 |
| RseI | CAYNNNNRTG | 3 cut(s) | 149, 623, 1067 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| SatI | GCNGC | 2 cut(s) | 228, 794 |
| Sau3AI | GATC | 2 cut(s) | 163, 1024 |
| Sau96I | GGNCC | 1 cut(s) | 739 |
| SchI | GAGTC | 1 cut(s) | 401 |
| ScrFI | CCNGG | 2 cut(s) | 777, 1013 |
| SduI | GDGCHC | 1 cut(s) | 1074 |
| SfaNI | GCATC | 2 cut(s) | 48, 478 |
| SfcI | CTRYAG | 1 cut(s) | 339 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 149, 623, 1067 |
| SmlI | CTYRAG | 1 cut(s) | 233 |
| SmoI | CTYRAG | 1 cut(s) | 233 |
| Sse9I | AATT | 4 cut(s) | 273, 419, 434, 871 |
| SsiI | CCGC | 2 cut(s) | 228, 912 |
| SspMI | CTAG | 3 cut(s) | 194, 326, 897 |
| StyD4I | CCNGG | 2 cut(s) | 775, 1011 |
| StyI | CCWWGG | 1 cut(s) | 357 |
| TaaI | ACNGT | 3 cut(s) | 148, 283, 733 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TasI | AATT | 4 cut(s) | 273, 419, 434, 871 |
| TauI | GCSGC | 1 cut(s) | 230 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TscAI | CASTG | 2 cut(s) | 151, 288 |
| TseI | GCWGC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 4 cut(s) | 170, 285, 447, 778 |
| TspRI | CASTG | 2 cut(s) | 151, 288 |
| VneI | GTGCAC | 1 cut(s) | 1070 |
| XapI | RAATTY | 2 cut(s) | 419, 871 |
| XceI | RCATGY | 1 cut(s) | 964 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 179 |
| XspI | CTAG | 3 cut(s) | 194, 326, 897 |
| Zsp2I | ATGCAT | 2 cut(s) | 493, 819 |