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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1039 |
| Acc36I | ACCTGC | 1 cut(s) | 1039 |
| AccII | CGCG | 2 cut(s) | 176, 962 |
| AciI | CCGC | 1 cut(s) | 39 |
| AcsI | RAATTY | 1 cut(s) | 363 |
| AcuI | CTGAAG | 1 cut(s) | 480 |
| AcyI | GRCGYC | 1 cut(s) | 756 |
| AfaI | GTAC | 1 cut(s) | 189 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 604 |
| AflIII | ACRYGT | 1 cut(s) | 174 |
| AgsI | TTSAA | 8 cut(s) | 68, 217, 368, 379, 559, 671, 797, 1094 |
| AjnI | CCWGG | 1 cut(s) | 230 |
| AluBI | AGCT | 7 cut(s) | 30, 272, 313, 333, 544, 1011, 1090 |
| AluI | AGCT | 7 cut(s) | 30, 272, 313, 333, 544, 1011, 1090 |
| Alw21I | GWGCWC | 2 cut(s) | 335, 546 |
| Alw26I | GTCTC | 3 cut(s) | 138, 806, 867 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 30 |
| Ama87I | CYCGRG | 2 cut(s) | 141, 976 |
| AoxI | GGCC | 1 cut(s) | 763 |
| ApeKI | GCWGC | 4 cut(s) | 24, 27, 412, 1034 |
| ApoI | RAATTY | 1 cut(s) | 363 |
| AspS9I | GGNCC | 1 cut(s) | 998 |
| AsuC2I | CCSGG | 1 cut(s) | 539 |
| AsuHPI | GGTGA | 5 cut(s) | 146, 340, 490, 760, 1001 |
| AvaI | CYCGRG | 2 cut(s) | 141, 976 |
| AvaII | GGWCC | 1 cut(s) | 998 |
| AxyI | CCTNAGG | 1 cut(s) | 760 |
| BanII | GRGCYC | 2 cut(s) | 335, 546 |
| Bbv12I | GWGCWC | 2 cut(s) | 335, 546 |
| BbvCI | CCTCAGC | 1 cut(s) | 717 |
| BbvI | GCAGC | 4 cut(s) | 36, 39, 424, 1021 |
| BccI | CCATC | 5 cut(s) | 125, 215, 668, 779, 980 |
| BciT130I | CCWGG | 1 cut(s) | 232 |
| BclI | TGATCA | 1 cut(s) | 1014 |
| BcnI | CCSGG | 1 cut(s) | 539 |
| BcoDI | GTCTC | 3 cut(s) | 138, 806, 867 |
| BfaI | CTAG | 4 cut(s) | 269, 273, 599, 1008 |
| BfuAI | ACCTGC | 1 cut(s) | 1039 |
| BglII | AGATCT | 1 cut(s) | 121 |
| BisI | GCNGC | 4 cut(s) | 25, 28, 413, 1035 |
| BlsI | GCNGC | 4 cut(s) | 26, 29, 414, 1036 |
| Bme1390I | CCNGG | 2 cut(s) | 232, 539 |
| Bme18I | GGWCC | 1 cut(s) | 998 |
| BmeT110I | CYCGRG | 2 cut(s) | 141, 976 |
| BmgT120I | GGNCC | 1 cut(s) | 998 |
| BmiI | GGNNCC | 2 cut(s) | 278, 831 |
| BmrFI | CCNGG | 2 cut(s) | 232, 539 |
| BmsI | GCATC | 5 cut(s) | 127, 424, 634, 841, 928 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 511, 543, 563, 595 |
| Bpu10I | CCTNAGC | 1 cut(s) | 717 |
| BpuMI | CCSGG | 1 cut(s) | 539 |
| Bsa29I | ATCGAT | 1 cut(s) | 162 |
| BsaAI | YACGTR | 1 cut(s) | 1085 |
| BsaHI | GRCGYC | 1 cut(s) | 756 |
| BsaI | GGTCTC | 2 cut(s) | 138, 806 |
| BsaJI | CCNNGG | 4 cut(s) | 322, 567, 603, 648 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 604 |
| Bse21I | CCTNAGG | 1 cut(s) | 760 |
| BseBI | CCWGG | 1 cut(s) | 232 |
| BseCI | ATCGAT | 1 cut(s) | 162 |
| BseDI | CCNNGG | 4 cut(s) | 322, 567, 603, 648 |
| BseGI | GGATG | 3 cut(s) | 415, 699, 771 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 604 |
| BseMII | CTCAG | 2 cut(s) | 731, 774 |
| BseRI | GAGGAG | 1 cut(s) | 407 |
| BseXI | GCAGC | 4 cut(s) | 36, 39, 424, 1021 |
| BseYI | CCCAGC | 1 cut(s) | 30 |
| BsgI | GTGCAG | 1 cut(s) | 199 |
| Bsh1236I | CGCG | 2 cut(s) | 176, 962 |
| BshFI | GGCC | 1 cut(s) | 765 |
| BshVI | ATCGAT | 1 cut(s) | 162 |
| BsiHKAI | GWGCWC | 2 cut(s) | 335, 546 |
| BsiHKCI | CYCGRG | 2 cut(s) | 141, 976 |
| BsiSI | CCGG | 2 cut(s) | 539, 722 |
| BslFI | GGGAC | 1 cut(s) | 913 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 604 |
| BsmAI | GTCTC | 3 cut(s) | 138, 806, 867 |
| BsmBI | CGTCTC | 1 cut(s) | 867 |
| BsmFI | GGGAC | 1 cut(s) | 913 |
| BsmI | GAATGC | 1 cut(s) | 684 |
| BsnI | GGCC | 1 cut(s) | 765 |
| Bso31I | GGTCTC | 2 cut(s) | 138, 806 |
| BsoBI | CYCGRG | 2 cut(s) | 141, 976 |
| Bsp1286I | GDGCHC | 2 cut(s) | 335, 546 |
| Bsp1407I | TGTACA | 1 cut(s) | 187 |
| Bsp143I | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| Bsp19I | CCATGG | 2 cut(s) | 322, 603 |
| Bsp68I | TCGCGA | 1 cut(s) | 962 |
| BspACI | CCGC | 1 cut(s) | 39 |
| BspANI | GGCC | 1 cut(s) | 765 |
| BspCNI | CTCAG | 2 cut(s) | 730, 773 |
| BspDI | ATCGAT | 1 cut(s) | 162 |
| BspFNI | CGCG | 2 cut(s) | 176, 962 |
| BspHI | TCATGA | 1 cut(s) | 253 |
| BspLI | GGNNCC | 2 cut(s) | 278, 831 |
| BspMI | ACCTGC | 1 cut(s) | 1039 |
| BspQI | GCTCTTC | 2 cut(s) | 340, 456 |
| BspTNI | GGTCTC | 2 cut(s) | 138, 806 |
| BsrGI | TGTACA | 1 cut(s) | 187 |
| BssECI | CCNNGG | 4 cut(s) | 322, 567, 603, 648 |
| BssMI | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| BssNI | GRCGYC | 1 cut(s) | 756 |
| BssT1I | CCWWGG | 4 cut(s) | 322, 567, 603, 648 |
| Bst2UI | CCWGG | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 1 cut(s) | 248 |
| Bst6I | CTCTTC | 3 cut(s) | 12, 340, 456 |
| BstACI | GRCGYC | 1 cut(s) | 756 |
| BstAUI | TGTACA | 1 cut(s) | 187 |
| BstBAI | YACGTR | 1 cut(s) | 1085 |
| BstC8I | GCNNGC | 2 cut(s) | 178, 289 |
| BstDEI | CTNAG | 2 cut(s) | 717, 760 |
| BstDSI | CCRYGG | 2 cut(s) | 322, 603 |
| BstF5I | GGATG | 3 cut(s) | 415, 699, 771 |
| BstFNI | CGCG | 2 cut(s) | 176, 962 |
| BstKTI | GATC | 4 cut(s) | 124, 162, 1017, 1117 |
| BstMAI | GTCTC | 3 cut(s) | 138, 806, 867 |
| BstMBI | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 36, 1079 |
| BstNI | CCWGG | 1 cut(s) | 232 |
| BstSCI | CCNGG | 2 cut(s) | 230, 537 |
| BstUI | CGCG | 2 cut(s) | 176, 962 |
| BstV1I | GCAGC | 4 cut(s) | 36, 39, 424, 1021 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| Bsu15I | ATCGAT | 1 cut(s) | 162 |
| Bsu36I | CCTNAGG | 1 cut(s) | 760 |
| BsuRI | GGCC | 1 cut(s) | 765 |
| BsuTUI | ATCGAT | 1 cut(s) | 162 |
| BtgI | CCRYGG | 2 cut(s) | 322, 603 |
| BtsCI | GGATG | 3 cut(s) | 415, 699, 771 |
| BtuMI | TCGCGA | 1 cut(s) | 962 |
| BveI | ACCTGC | 1 cut(s) | 1039 |
| Cac8I | GCNNGC | 2 cut(s) | 178, 289 |
| CaiI | CAGNNNCTG | 1 cut(s) | 30 |
| CciI | TCATGA | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 1 cut(s) | 998 |
| ClaI | ATCGAT | 1 cut(s) | 162 |
| CseI | GACGC | 3 cut(s) | 182, 764, 884 |
| Csp6I | GTAC | 1 cut(s) | 188 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 269, 304 |
| CviAII | CATG | 5 cut(s) | 254, 323, 604, 688, 711 |
| CviQI | GTAC | 1 cut(s) | 188 |
| DdeI | CTNAG | 2 cut(s) | 717, 760 |
| DpnI | GATC | 4 cut(s) | 123, 161, 1016, 1116 |
| DpnII | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| DraI | TTTAAA | 1 cut(s) | 636 |
| Eam1104I | CTCTTC | 3 cut(s) | 12, 340, 456 |
| EarI | CTCTTC | 3 cut(s) | 12, 340, 456 |
| Ecl136II | GAGCTC | 2 cut(s) | 333, 544 |
| Eco130I | CCWWGG | 4 cut(s) | 322, 567, 603, 648 |
| Eco147I | AGGCCT | 1 cut(s) | 765 |
| Eco24I | GRGCYC | 2 cut(s) | 335, 546 |
| Eco31I | GGTCTC | 2 cut(s) | 138, 806 |
| Eco47I | GGWCC | 1 cut(s) | 998 |
| Eco53kI | GAGCTC | 2 cut(s) | 333, 544 |
| Eco57I | CTGAAG | 1 cut(s) | 480 |
| Eco81I | CCTNAGG | 1 cut(s) | 760 |
| Eco88I | CYCGRG | 2 cut(s) | 141, 976 |
| EcoICRI | GAGCTC | 2 cut(s) | 333, 544 |
| EcoRII | CCWGG | 1 cut(s) | 230 |
| EcoT14I | CCWWGG | 4 cut(s) | 322, 567, 603, 648 |
| EcoT38I | GRGCYC | 2 cut(s) | 335, 546 |
| ErhI | CCWWGG | 4 cut(s) | 322, 567, 603, 648 |
| Esp3I | CGTCTC | 1 cut(s) | 867 |
| FaeI | CATG | 5 cut(s) | 257, 326, 607, 691, 714 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 515, 547 |
| FaqI | GGGAC | 1 cut(s) | 913 |
| FatI | CATG | 5 cut(s) | 253, 322, 603, 687, 710 |
| FbaI | TGATCA | 1 cut(s) | 1014 |
| Fnu4HI | GCNGC | 4 cut(s) | 25, 28, 413, 1035 |
| FokI | GGATG | 3 cut(s) | 402, 706, 758 |
| FriOI | GRGCYC | 2 cut(s) | 335, 546 |
| Fsp4HI | GCNGC | 4 cut(s) | 25, 28, 413, 1035 |
| FspBI | CTAG | 4 cut(s) | 269, 273, 599, 1008 |
| GluI | GCNGC | 4 cut(s) | 25, 28, 413, 1035 |
| GsaI | CCCAGC | 1 cut(s) | 34 |
| HaeIII | GGCC | 1 cut(s) | 765 |
| HapII | CCGG | 2 cut(s) | 539, 722 |
| HgaI | GACGC | 3 cut(s) | 182, 764, 884 |
| Hin1I | GRCGYC | 1 cut(s) | 756 |
| Hin1II | CATG | 5 cut(s) | 257, 326, 607, 691, 714 |
| HincII | GTYRAC | 1 cut(s) | 865 |
| HindII | GTYRAC | 1 cut(s) | 865 |
| HindIII | AAGCTT | 1 cut(s) | 1088 |
| HinfI | GANTC | 5 cut(s) | 164, 239, 257, 951, 1047 |
| HpaII | CCGG | 2 cut(s) | 539, 722 |
| HphI | GGTGA | 5 cut(s) | 146, 340, 490, 760, 1001 |
| Hpy166II | GTNNAC | 3 cut(s) | 319, 865, 934 |
| Hpy188I | TCNGA | 7 cut(s) | 169, 262, 460, 754, 872, 940, 1052 |
| Hpy8I | GTNNAC | 3 cut(s) | 319, 865, 934 |
| Hpy99I | CGWCG | 2 cut(s) | 173, 176 |
| HpyAV | CCTTC | 5 cut(s) | 69, 107, 515, 791, 808 |
| HpyCH4III | ACNGT | 1 cut(s) | 248 |
| HpyCH4IV | ACGT | 2 cut(s) | 486, 1084 |
| HpyCH4V | TGCA | 8 cut(s) | 180, 291, 682, 781, 972, 1037, 1057, 1082 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 36, 1079 |
| HpyF3I | CTNAG | 2 cut(s) | 717, 760 |
| HpySE526I | ACGT | 2 cut(s) | 486, 1084 |
| Hsp92I | GRCGYC | 1 cut(s) | 756 |
| Hsp92II | CATG | 5 cut(s) | 257, 326, 607, 691, 714 |
| Ksp22I | TGATCA | 1 cut(s) | 1014 |
| Kzo9I | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| LguI | GCTCTTC | 2 cut(s) | 340, 456 |
| LmnI | GCTCC | 3 cut(s) | 282, 541, 549 |
| Lsp1109I | GCAGC | 4 cut(s) | 36, 39, 424, 1021 |
| LweI | GCATC | 5 cut(s) | 127, 424, 634, 841, 928 |
| MaeI | CTAG | 4 cut(s) | 269, 273, 599, 1008 |
| MaeII | ACGT | 2 cut(s) | 486, 1084 |
| MalI | GATC | 4 cut(s) | 123, 161, 1016, 1116 |
| MboI | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| MboII | GAAGA | 9 cut(s) | 29, 298, 327, 367, 409, 434, 473, 484, 683 |
| MfeI | CAATTG | 1 cut(s) | 927 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 2 cut(s) | 335, 546 |
| MluCI | AATT | 8 cut(s) | 71, 351, 363, 639, 653, 792, 927, 993 |
| MluI | ACGCGT | 1 cut(s) | 174 |
| MlyI | GAGTC | 1 cut(s) | 945 |
| MmeI | TCCRAC | 2 cut(s) | 192, 324 |
| MseI | TTAA | 4 cut(s) | 354, 635, 837, 888 |
| MslI | CAYNNNNRTG | 1 cut(s) | 692 |
| MspA1I | CMGCKG | 2 cut(s) | 30, 313 |
| MspI | CCGG | 2 cut(s) | 539, 722 |
| MspR9I | CCNGG | 2 cut(s) | 232, 539 |
| MunI | CAATTG | 1 cut(s) | 927 |
| Mva1269I | GAATGC | 1 cut(s) | 684 |
| MvaI | CCWGG | 1 cut(s) | 232 |
| MvnI | CGCG | 2 cut(s) | 176, 962 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 36, 1079 |
| NciI | CCSGG | 1 cut(s) | 539 |
| NcoI | CCATGG | 2 cut(s) | 322, 603 |
| NdeII | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| NlaIII | CATG | 5 cut(s) | 257, 326, 607, 691, 714 |
| NlaIV | GGNNCC | 2 cut(s) | 278, 831 |
| NruI | TCGCGA | 1 cut(s) | 962 |
| PaeR7I | CTCGAG | 1 cut(s) | 141 |
| PagI | TCATGA | 1 cut(s) | 253 |
| PaqCI | CACCTGC | 1 cut(s) | 1039 |
| PceI | AGGCCT | 1 cut(s) | 765 |
| PciSI | GCTCTTC | 2 cut(s) | 340, 456 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 168 |
| PctI | GAATGC | 1 cut(s) | 684 |
| PfeI | GAWTC | 4 cut(s) | 164, 239, 257, 1047 |
| PfoI | TCCNGGA | 2 cut(s) | 230, 537 |
| PkrI | GCNGC | 4 cut(s) | 26, 29, 414, 1036 |
| PleI | GAGTC | 1 cut(s) | 945 |
| PpsI | GAGTC | 1 cut(s) | 945 |
| Ppu21I | YACGTR | 1 cut(s) | 1085 |
| Psp124BI | GAGCTC | 2 cut(s) | 335, 546 |
| Psp6I | CCWGG | 1 cut(s) | 230 |
| PspFI | CCCAGC | 1 cut(s) | 30 |
| PspGI | CCWGG | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 2 cut(s) | 278, 831 |
| PspPI | GGNCC | 1 cut(s) | 998 |
| PstNI | CAGNNNCTG | 1 cut(s) | 30 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| PvuII | CAGCTG | 2 cut(s) | 30, 313 |
| RruI | TCGCGA | 1 cut(s) | 962 |
| RsaI | GTAC | 1 cut(s) | 189 |
| RsaNI | GTAC | 1 cut(s) | 188 |
| RseI | CAYNNNNRTG | 1 cut(s) | 692 |
| SacI | GAGCTC | 2 cut(s) | 335, 546 |
| SapI | GCTCTTC | 2 cut(s) | 340, 456 |
| SaqAI | TTAA | 4 cut(s) | 354, 635, 837, 888 |
| SatI | GCNGC | 4 cut(s) | 25, 28, 413, 1035 |
| Sau3AI | GATC | 4 cut(s) | 121, 159, 1014, 1114 |
| Sau96I | GGNCC | 1 cut(s) | 998 |
| SchI | GAGTC | 1 cut(s) | 945 |
| ScrFI | CCNGG | 2 cut(s) | 232, 539 |
| SduI | GDGCHC | 2 cut(s) | 335, 546 |
| SfaNI | GCATC | 5 cut(s) | 127, 424, 634, 841, 928 |
| Sfr274I | CTCGAG | 1 cut(s) | 141 |
| SinI | GGWCC | 1 cut(s) | 998 |
| SlaI | CTCGAG | 1 cut(s) | 141 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 692 |
| SmlI | CTYRAG | 1 cut(s) | 141 |
| SmoI | CTYRAG | 1 cut(s) | 141 |
| Sse9I | AATT | 8 cut(s) | 71, 351, 363, 639, 653, 792, 927, 993 |
| SseBI | AGGCCT | 1 cut(s) | 765 |
| SsiI | CCGC | 1 cut(s) | 39 |
| SspMI | CTAG | 4 cut(s) | 269, 273, 599, 1008 |
| SstI | GAGCTC | 2 cut(s) | 335, 546 |
| StuI | AGGCCT | 1 cut(s) | 765 |
| StyD4I | CCNGG | 2 cut(s) | 230, 537 |
| StyI | CCWWGG | 4 cut(s) | 322, 567, 603, 648 |
| TaaI | ACNGT | 1 cut(s) | 248 |
| TaiI | ACGT | 2 cut(s) | 489, 1087 |
| TaqI | TCGA | 6 cut(s) | 126, 142, 162, 242, 386, 922 |
| TaqII | GACCGA | 1 cut(s) | 674 |
| TasI | AATT | 8 cut(s) | 71, 351, 363, 639, 653, 792, 927, 993 |
| TatI | WGTACW | 1 cut(s) | 187 |
| TfiI | GAWTC | 4 cut(s) | 164, 239, 257, 1047 |
| Tru1I | TTAA | 4 cut(s) | 354, 635, 837, 888 |
| Tru9I | TTAA | 4 cut(s) | 354, 635, 837, 888 |
| TseI | GCWGC | 4 cut(s) | 24, 27, 412, 1034 |
| TspDTI | ATGAA | 3 cut(s) | 279, 710, 804 |
| TspGWI | ACGGA | 1 cut(s) | 1034 |
| VpaK11BI | GGWCC | 1 cut(s) | 998 |
| XapI | RAATTY | 1 cut(s) | 363 |
| XhoI | CTCGAG | 1 cut(s) | 141 |
| XspI | CTAG | 4 cut(s) | 269, 273, 599, 1008 |