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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 47 |
| Acc65I | GGTACC | 1 cut(s) | 168 |
| AccB1I | GGYRCC | 1 cut(s) | 168 |
| AcsI | RAATTY | 2 cut(s) | 188, 233 |
| AfaI | GTAC | 1 cut(s) | 170 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 75 |
| AgsI | TTSAA | 2 cut(s) | 151, 428 |
| AjnI | CCWGG | 1 cut(s) | 216 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 359 |
| AoxI | GGCC | 2 cut(s) | 54, 58 |
| ApeKI | GCWGC | 3 cut(s) | 15, 120, 239 |
| ApoI | RAATTY | 2 cut(s) | 188, 233 |
| Asp718I | GGTACC | 1 cut(s) | 168 |
| AspS9I | GGNCC | 2 cut(s) | 54, 251 |
| AsuHPI | GGTGA | 1 cut(s) | 20 |
| AvaII | GGWCC | 1 cut(s) | 251 |
| BanI | GGYRCC | 1 cut(s) | 168 |
| BbvI | GCAGC | 3 cut(s) | 27, 107, 226 |
| BccI | CCATC | 1 cut(s) | 216 |
| BciT130I | CCWGG | 1 cut(s) | 218 |
| BfmI | CTRYAG | 3 cut(s) | 13, 240, 351 |
| BisI | GCNGC | 3 cut(s) | 16, 121, 240 |
| BlsI | GCNGC | 3 cut(s) | 17, 122, 241 |
| Bme1390I | CCNGG | 1 cut(s) | 218 |
| Bme18I | GGWCC | 1 cut(s) | 251 |
| BmgT120I | GGNCC | 2 cut(s) | 54, 251 |
| BmiI | GGNNCC | 1 cut(s) | 170 |
| BmrFI | CCNGG | 1 cut(s) | 218 |
| BmsI | GCATC | 4 cut(s) | 27, 82, 194, 389 |
| Bsa29I | ATCGAT | 1 cut(s) | 202 |
| BsaJI | CCNNGG | 3 cut(s) | 216, 217, 247 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 213, 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 75 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| BseBI | CCWGG | 1 cut(s) | 218 |
| BseCI | ATCGAT | 1 cut(s) | 202 |
| BseDI | CCNNGG | 3 cut(s) | 216, 217, 247 |
| BseGI | GGATG | 1 cut(s) | 85 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 75 |
| BseMII | CTCAG | 2 cut(s) | 351, 375 |
| BseXI | GCAGC | 3 cut(s) | 27, 107, 226 |
| BshFI | GGCC | 2 cut(s) | 56, 60 |
| BshNI | GGYRCC | 1 cut(s) | 168 |
| BshVI | ATCGAT | 1 cut(s) | 202 |
| BsiSI | CCGG | 2 cut(s) | 57, 405 |
| BslFI | GGGAC | 1 cut(s) | 416 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 75 |
| BsmFI | GGGAC | 1 cut(s) | 416 |
| BsnI | GGCC | 2 cut(s) | 56, 60 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspANI | GGCC | 2 cut(s) | 56, 60 |
| BspCNI | CTCAG | 2 cut(s) | 352, 376 |
| BspDI | ATCGAT | 1 cut(s) | 202 |
| BspLI | GGNNCC | 1 cut(s) | 170 |
| BspMAI | CTGCAG | 3 cut(s) | 17, 244, 355 |
| BspT107I | GGYRCC | 1 cut(s) | 168 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssECI | CCNNGG | 3 cut(s) | 216, 217, 247 |
| BssMI | GATC | 1 cut(s) | 199 |
| BssT1I | CCWWGG | 1 cut(s) | 247 |
| Bst2UI | CCWGG | 1 cut(s) | 218 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 2 cut(s) | 58, 351 |
| BstDEI | CTNAG | 2 cut(s) | 360, 384 |
| BstF5I | GGATG | 1 cut(s) | 85 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 24 |
| BstNI | CCWGG | 1 cut(s) | 218 |
| BstNSI | RCATGY | 1 cut(s) | 421 |
| BstSCI | CCNGG | 1 cut(s) | 216 |
| BstSFI | CTRYAG | 3 cut(s) | 13, 240, 351 |
| BstV1I | GCAGC | 3 cut(s) | 27, 107, 226 |
| Bsu15I | ATCGAT | 1 cut(s) | 202 |
| BsuRI | GGCC | 2 cut(s) | 56, 60 |
| BsuTUI | ATCGAT | 1 cut(s) | 202 |
| BtsCI | GGATG | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 2 cut(s) | 58, 351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 359 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 2 cut(s) | 54, 251 |
| ClaI | ATCGAT | 1 cut(s) | 202 |
| Csp6I | GTAC | 1 cut(s) | 169 |
| CviAII | CATG | 2 cut(s) | 28, 418 |
| CviJI | RGCY | 4 cut(s) | 56, 60, 120, 404 |
| CviKI_1 | RGCY | 4 cut(s) | 56, 60, 120, 404 |
| CviQI | GTAC | 1 cut(s) | 169 |
| DdeI | CTNAG | 2 cut(s) | 360, 384 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 47 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 1 cut(s) | 247 |
| Eco47I | GGWCC | 1 cut(s) | 251 |
| EcoO109I | RGGNCCY | 1 cut(s) | 251 |
| EcoRII | CCWGG | 1 cut(s) | 216 |
| EcoT14I | CCWWGG | 1 cut(s) | 247 |
| ErhI | CCWWGG | 1 cut(s) | 247 |
| FaeI | CATG | 2 cut(s) | 31, 421 |
| FaqI | GGGAC | 1 cut(s) | 416 |
| FatI | CATG | 2 cut(s) | 27, 417 |
| Fnu4HI | GCNGC | 3 cut(s) | 16, 121, 240 |
| FokI | GGATG | 1 cut(s) | 92 |
| FseI | GGCCGGCC | 1 cut(s) | 60 |
| Fsp4HI | GCNGC | 3 cut(s) | 16, 121, 240 |
| GluI | GCNGC | 3 cut(s) | 16, 121, 240 |
| HaeIII | GGCC | 2 cut(s) | 56, 60 |
| HapII | CCGG | 2 cut(s) | 57, 405 |
| Hin1II | CATG | 2 cut(s) | 31, 421 |
| HinfI | GANTC | 2 cut(s) | 224, 285 |
| HpaII | CCGG | 2 cut(s) | 57, 405 |
| HphI | GGTGA | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 1 cut(s) | 412 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 385 |
| Hpy188III | TCNNGA | 2 cut(s) | 77, 133 |
| Hpy8I | GTNNAC | 1 cut(s) | 412 |
| HpyAV | CCTTC | 2 cut(s) | 157, 264 |
| HpyCH4V | TGCA | 6 cut(s) | 15, 27, 242, 353, 380, 391 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 24 |
| HpyF3I | CTNAG | 2 cut(s) | 360, 384 |
| Hsp92II | CATG | 2 cut(s) | 31, 421 |
| KpnI | GGTACC | 1 cut(s) | 172 |
| KroI | GCCGGC | 1 cut(s) | 56 |
| KroNI | GCCGGC | 1 cut(s) | 58 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| Lsp1109I | GCAGC | 3 cut(s) | 27, 107, 226 |
| LweI | GCATC | 4 cut(s) | 27, 82, 194, 389 |
| MaeIII | GTNAC | 3 cut(s) | 8, 160, 268 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 1 cut(s) | 203 |
| MluCI | AATT | 4 cut(s) | 151, 188, 233, 301 |
| MnlI | CCTC | 5 cut(s) | 71, 182, 187, 274, 328 |
| MroNI | GCCGGC | 1 cut(s) | 56 |
| MslI | CAYNNNNRTG | 1 cut(s) | 78 |
| MspI | CCGG | 2 cut(s) | 57, 405 |
| MspR9I | CCNGG | 1 cut(s) | 218 |
| MvaI | CCWGG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 24 |
| NaeI | GCCGGC | 1 cut(s) | 58 |
| NdeII | GATC | 1 cut(s) | 199 |
| NgoMIV | GCCGGC | 1 cut(s) | 56 |
| NlaIII | CATG | 2 cut(s) | 31, 421 |
| NlaIV | GGNNCC | 1 cut(s) | 170 |
| NmuCI | GTSAC | 3 cut(s) | 8, 160, 268 |
| NspI | RCATGY | 1 cut(s) | 421 |
| PasI | CCCWGGG | 1 cut(s) | 217 |
| PdiI | GCCGGC | 1 cut(s) | 58 |
| PfeI | GAWTC | 2 cut(s) | 224, 285 |
| PkrI | GCNGC | 3 cut(s) | 17, 122, 241 |
| PpuMI | RGGWCCY | 1 cut(s) | 251 |
| Psp5II | RGGWCCY | 1 cut(s) | 251 |
| Psp6I | CCWGG | 1 cut(s) | 216 |
| PspGI | CCWGG | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 1 cut(s) | 170 |
| PspPI | GGNCC | 2 cut(s) | 54, 251 |
| PspPPI | RGGWCCY | 1 cut(s) | 251 |
| PstI | CTGCAG | 3 cut(s) | 17, 244, 355 |
| PstNI | CAGNNNCTG | 1 cut(s) | 359 |
| RigI | GGCCGGCC | 1 cut(s) | 60 |
| RsaI | GTAC | 1 cut(s) | 170 |
| RsaNI | GTAC | 1 cut(s) | 169 |
| RseI | CAYNNNNRTG | 1 cut(s) | 78 |
| SatI | GCNGC | 3 cut(s) | 16, 121, 240 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| Sau96I | GGNCC | 2 cut(s) | 54, 251 |
| ScrFI | CCNGG | 1 cut(s) | 218 |
| SetI | ASST | 6 cut(s) | 170, 174, 181, 198, 253, 339 |
| SfaNI | GCATC | 4 cut(s) | 27, 82, 194, 389 |
| SfcI | CTRYAG | 3 cut(s) | 13, 240, 351 |
| SinI | GGWCC | 1 cut(s) | 251 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 78 |
| Sse9I | AATT | 4 cut(s) | 151, 188, 233, 301 |
| StyD4I | CCNGG | 1 cut(s) | 216 |
| StyI | CCWWGG | 1 cut(s) | 247 |
| TaqI | TCGA | 2 cut(s) | 21, 202 |
| TasI | AATT | 4 cut(s) | 151, 188, 233, 301 |
| TfiI | GAWTC | 2 cut(s) | 224, 285 |
| TseFI | GTSAC | 3 cut(s) | 8, 160, 268 |
| TseI | GCWGC | 3 cut(s) | 15, 120, 239 |
| Tsp45I | GTSAC | 3 cut(s) | 8, 160, 268 |
| VpaK11BI | GGWCC | 1 cut(s) | 251 |
| XapI | RAATTY | 2 cut(s) | 188, 233 |
| XceI | RCATGY | 1 cut(s) | 421 |