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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 498 |
| AccII | CGCG | 3 cut(s) | 441, 443, 645 |
| AccIII | TCCGGA | 1 cut(s) | 345 |
| AciI | CCGC | 3 cut(s) | 200, 439, 645 |
| AclWI | GGATC | 2 cut(s) | 288, 564 |
| AcsI | RAATTY | 2 cut(s) | 193, 362 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 488, 529, 644, 658, 700 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AgsI | TTSAA | 2 cut(s) | 272, 569 |
| AjnI | CCWGG | 1 cut(s) | 528 |
| AluBI | AGCT | 2 cut(s) | 26, 222 |
| AluI | AGCT | 2 cut(s) | 26, 222 |
| AlwI | GGATC | 2 cut(s) | 288, 564 |
| Ama87I | CYCGRG | 1 cut(s) | 27 |
| Aor13HI | TCCGGA | 1 cut(s) | 345 |
| ApoI | RAATTY | 2 cut(s) | 193, 362 |
| AspLEI | GCGC | 1 cut(s) | 443 |
| AsuC2I | CCSGG | 1 cut(s) | 554 |
| AsuHPI | GGTGA | 1 cut(s) | 673 |
| AvaI | CYCGRG | 1 cut(s) | 27 |
| BanII | GRGCYC | 1 cut(s) | 546 |
| BciT130I | CCWGG | 1 cut(s) | 530 |
| BcnI | CCSGG | 1 cut(s) | 554 |
| BfaI | CTAG | 2 cut(s) | 219, 626 |
| BfmI | CTRYAG | 1 cut(s) | 45 |
| BisI | GCNGC | 1 cut(s) | 646 |
| BlsI | GCNGC | 1 cut(s) | 647 |
| Bme1390I | CCNGG | 2 cut(s) | 530, 554 |
| BmeT110I | CYCGRG | 1 cut(s) | 27 |
| BmrFI | CCNGG | 2 cut(s) | 530, 554 |
| BpuMI | CCSGG | 1 cut(s) | 554 |
| BsaBI | GATNNNNATC | 1 cut(s) | 279 |
| BsaWI | WCCGGW | 1 cut(s) | 345 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 488, 529, 644, 658, 700 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| Bse8I | GATNNNNATC | 1 cut(s) | 279 |
| BseAI | TCCGGA | 1 cut(s) | 345 |
| BseBI | CCWGG | 1 cut(s) | 530 |
| BseGI | GGATG | 2 cut(s) | 497, 513 |
| BseJI | GATNNNNATC | 1 cut(s) | 279 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 488, 529, 644, 658, 700 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BseRI | GAGGAG | 2 cut(s) | 316, 410 |
| Bsh1236I | CGCG | 3 cut(s) | 441, 443, 645 |
| BsiHKCI | CYCGRG | 1 cut(s) | 27 |
| BsiSI | CCGG | 2 cut(s) | 346, 553 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 488, 529, 644, 658, 700 |
| BsoBI | CYCGRG | 1 cut(s) | 27 |
| Bsp1286I | GDGCHC | 1 cut(s) | 546 |
| Bsp13I | TCCGGA | 1 cut(s) | 345 |
| Bsp143I | GATC | 3 cut(s) | 19, 280, 556 |
| BspACI | CCGC | 3 cut(s) | 200, 439, 645 |
| BspEI | TCCGGA | 1 cut(s) | 345 |
| BspFNI | CGCG | 3 cut(s) | 441, 443, 645 |
| BspPI | GGATC | 2 cut(s) | 288, 564 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BssMI | GATC | 3 cut(s) | 19, 280, 556 |
| Bst2UI | CCWGG | 1 cut(s) | 530 |
| Bst4CI | ACNGT | 1 cut(s) | 377 |
| BstC8I | GCNNGC | 3 cut(s) | 117, 455, 581 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 527 |
| BstF5I | GGATG | 2 cut(s) | 497, 513 |
| BstFNI | CGCG | 3 cut(s) | 441, 443, 645 |
| BstHHI | GCGC | 1 cut(s) | 443 |
| BstKTI | GATC | 3 cut(s) | 22, 283, 559 |
| BstMBI | GATC | 3 cut(s) | 19, 280, 556 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 168, 463 |
| BstNI | CCWGG | 1 cut(s) | 530 |
| BstNSI | RCATGY | 2 cut(s) | 259, 319 |
| BstSCI | CCNGG | 2 cut(s) | 528, 552 |
| BstSFI | CTRYAG | 1 cut(s) | 45 |
| BstUI | CGCG | 3 cut(s) | 441, 443, 645 |
| BstX2I | RGATCY | 2 cut(s) | 280, 556 |
| BstYI | RGATCY | 2 cut(s) | 280, 556 |
| BtsCI | GGATG | 2 cut(s) | 497, 513 |
| Cac8I | GCNNGC | 3 cut(s) | 117, 455, 581 |
| CfoI | GCGC | 1 cut(s) | 443 |
| CseI | GACGC | 1 cut(s) | 432 |
| CviAII | CATG | 6 cut(s) | 35, 94, 256, 316, 483, 518 |
| CviJI | RGCY | 8 cut(s) | 26, 222, 237, 324, 406, 544, 579, 667 |
| CviKI_1 | RGCY | 8 cut(s) | 26, 222, 237, 324, 406, 544, 579, 667 |
| DpnI | GATC | 3 cut(s) | 21, 282, 558 |
| DpnII | GATC | 3 cut(s) | 19, 280, 556 |
| Eco24I | GRGCYC | 1 cut(s) | 546 |
| Eco88I | CYCGRG | 1 cut(s) | 27 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 527 |
| EcoRII | CCWGG | 1 cut(s) | 528 |
| EcoT38I | GRGCYC | 1 cut(s) | 546 |
| FaeI | CATG | 6 cut(s) | 38, 97, 259, 319, 486, 521 |
| FatI | CATG | 6 cut(s) | 34, 93, 255, 315, 482, 517 |
| FauI | CCCGC | 2 cut(s) | 193, 446 |
| FblI | GTMKAC | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 1 cut(s) | 646 |
| FokI | GGATG | 2 cut(s) | 500, 504 |
| FriOI | GRGCYC | 1 cut(s) | 546 |
| Fsp4HI | GCNGC | 1 cut(s) | 646 |
| FspBI | CTAG | 2 cut(s) | 219, 626 |
| GlaI | GCGC | 1 cut(s) | 442 |
| GluI | GCNGC | 1 cut(s) | 646 |
| HapII | CCGG | 2 cut(s) | 346, 553 |
| HgaI | GACGC | 1 cut(s) | 432 |
| HhaI | GCGC | 1 cut(s) | 443 |
| Hin1II | CATG | 6 cut(s) | 38, 97, 259, 319, 486, 521 |
| Hin6I | GCGC | 1 cut(s) | 441 |
| HinP1I | GCGC | 1 cut(s) | 441 |
| HincII | GTYRAC | 2 cut(s) | 373, 499 |
| HindII | GTYRAC | 2 cut(s) | 373, 499 |
| HinfI | GANTC | 1 cut(s) | 597 |
| HpaII | CCGG | 2 cut(s) | 346, 553 |
| HphI | GGTGA | 1 cut(s) | 673 |
| Hpy166II | GTNNAC | 4 cut(s) | 373, 411, 479, 499 |
| Hpy188I | TCNGA | 1 cut(s) | 13 |
| Hpy188III | TCNNGA | 2 cut(s) | 244, 346 |
| Hpy8I | GTNNAC | 4 cut(s) | 373, 411, 479, 499 |
| Hpy99I | CGWCG | 1 cut(s) | 688 |
| HpyCH4III | ACNGT | 1 cut(s) | 377 |
| HpyCH4IV | ACGT | 1 cut(s) | 475 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 34, 101, 152, 457 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 168, 463 |
| HpySE526I | ACGT | 1 cut(s) | 475 |
| Hsp92II | CATG | 6 cut(s) | 38, 97, 259, 319, 486, 521 |
| HspAI | GCGC | 1 cut(s) | 441 |
| Kpn2I | TCCGGA | 1 cut(s) | 345 |
| Kzo9I | GATC | 3 cut(s) | 19, 280, 556 |
| LpnPI | CCDG | 7 cut(s) | 157, 359, 452, 515, 542, 566, 593 |
| MaeI | CTAG | 2 cut(s) | 219, 626 |
| MaeII | ACGT | 1 cut(s) | 475 |
| MaeIII | GTNAC | 1 cut(s) | 485 |
| MalI | GATC | 3 cut(s) | 21, 282, 558 |
| MboI | GATC | 3 cut(s) | 19, 280, 556 |
| MboII | GAAGA | 5 cut(s) | 26, 29, 202, 284, 592 |
| MfeI | CAATTG | 1 cut(s) | 447 |
| MflI | RGATCY | 2 cut(s) | 280, 556 |
| MhlI | GDGCHC | 1 cut(s) | 546 |
| MluCI | AATT | 4 cut(s) | 193, 267, 362, 447 |
| MroI | TCCGGA | 1 cut(s) | 345 |
| MslI | CAYNNNNRTG | 2 cut(s) | 140, 507 |
| MspI | CCGG | 2 cut(s) | 346, 553 |
| MspR9I | CCNGG | 2 cut(s) | 530, 554 |
| MunI | CAATTG | 1 cut(s) | 447 |
| MvaI | CCWGG | 1 cut(s) | 530 |
| MvnI | CGCG | 3 cut(s) | 441, 443, 645 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 168, 463 |
| NciI | CCSGG | 1 cut(s) | 554 |
| NdeII | GATC | 3 cut(s) | 19, 280, 556 |
| NlaIII | CATG | 6 cut(s) | 38, 97, 259, 319, 486, 521 |
| NspI | RCATGY | 2 cut(s) | 259, 319 |
| PciI | ACATGT | 1 cut(s) | 315 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 495, 531, 601 |
| PfeI | GAWTC | 1 cut(s) | 597 |
| PkrI | GCNGC | 1 cut(s) | 647 |
| PscI | ACATGT | 1 cut(s) | 315 |
| Psp6I | CCWGG | 1 cut(s) | 528 |
| PspGI | CCWGG | 1 cut(s) | 528 |
| PsuI | RGATCY | 2 cut(s) | 280, 556 |
| RseI | CAYNNNNRTG | 2 cut(s) | 140, 507 |
| SalI | GTCGAC | 1 cut(s) | 497 |
| SatI | GCNGC | 1 cut(s) | 646 |
| Sau3AI | GATC | 3 cut(s) | 19, 280, 556 |
| ScrFI | CCNGG | 2 cut(s) | 530, 554 |
| SduI | GDGCHC | 1 cut(s) | 546 |
| SetI | ASST | 8 cut(s) | 28, 220, 224, 478, 534, 621, 627, 654 |
| SfcI | CTRYAG | 1 cut(s) | 45 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 140, 507 |
| Sse9I | AATT | 4 cut(s) | 193, 267, 362, 447 |
| SsiI | CCGC | 3 cut(s) | 200, 439, 645 |
| SspMI | CTAG | 2 cut(s) | 219, 626 |
| StyD4I | CCNGG | 2 cut(s) | 528, 552 |
| TaaI | ACNGT | 1 cut(s) | 377 |
| TaiI | ACGT | 1 cut(s) | 478 |
| TaqI | TCGA | 3 cut(s) | 388, 498, 534 |
| TasI | AATT | 4 cut(s) | 193, 267, 362, 447 |
| TauI | GCSGC | 1 cut(s) | 648 |
| TfiI | GAWTC | 1 cut(s) | 597 |
| TspGWI | ACGGA | 4 cut(s) | 242, 504, 593, 627 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 527 |
| XapI | RAATTY | 2 cut(s) | 193, 362 |
| XceI | RCATGY | 2 cut(s) | 259, 319 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 536 |
| XmiI | GTMKAC | 1 cut(s) | 498 |
| XspI | CTAG | 2 cut(s) | 219, 626 |