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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 7 |
| AccIII | TCCGGA | 1 cut(s) | 724 |
| AciI | CCGC | 1 cut(s) | 785 |
| AclWI | GGATC | 2 cut(s) | 92, 418 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 715 |
| AgsI | TTSAA | 4 cut(s) | 129, 160, 360, 489 |
| AjiI | CACGTC | 1 cut(s) | 95 |
| AluBI | AGCT | 3 cut(s) | 173, 421, 557 |
| AluI | AGCT | 3 cut(s) | 173, 421, 557 |
| Alw21I | GWGCWC | 1 cut(s) | 322 |
| Alw44I | GTGCAC | 1 cut(s) | 318 |
| AlwI | GGATC | 2 cut(s) | 92, 418 |
| Aor13HI | TCCGGA | 1 cut(s) | 724 |
| AoxI | GGCC | 1 cut(s) | 560 |
| ApaLI | GTGCAC | 1 cut(s) | 318 |
| ApeKI | GCWGC | 1 cut(s) | 599 |
| AsuHPI | GGTGA | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 1 cut(s) | 322 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 810, 843, 853, 886, 896, 929 |
| Bbv12I | GWGCWC | 1 cut(s) | 322 |
| BbvI | GCAGC | 1 cut(s) | 611 |
| BccI | CCATC | 2 cut(s) | 589, 704 |
| BciVI | GTATCC | 3 cut(s) | 838, 881, 924 |
| BfmI | CTRYAG | 1 cut(s) | 477 |
| BfuI | GTATCC | 3 cut(s) | 838, 881, 924 |
| BglII | AGATCT | 1 cut(s) | 667 |
| BisI | GCNGC | 1 cut(s) | 600 |
| BlsI | GCNGC | 1 cut(s) | 601 |
| BmgBI | CACGTC | 1 cut(s) | 95 |
| BmsI | GCATC | 2 cut(s) | 526, 713 |
| Bpu10I | CCTNAGC | 1 cut(s) | 174 |
| BsaBI | GATNNNNATC | 1 cut(s) | 83 |
| BsaJI | CCNNGG | 1 cut(s) | 427 |
| BsaWI | WCCGGW | 1 cut(s) | 724 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 255, 285 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 715 |
| Bse3DI | GCAATG | 1 cut(s) | 683 |
| Bse8I | GATNNNNATC | 1 cut(s) | 83 |
| BseAI | TCCGGA | 1 cut(s) | 724 |
| BseDI | CCNNGG | 1 cut(s) | 427 |
| BseGI | GGATG | 2 cut(s) | 696, 704 |
| BseJI | GATNNNNATC | 1 cut(s) | 83 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 715 |
| BseMI | GCAATG | 1 cut(s) | 683 |
| BseMII | CTCAG | 2 cut(s) | 836, 879 |
| BseRI | GAGGAG | 4 cut(s) | 270, 419, 671, 674 |
| BseSI | GKGCMC | 1 cut(s) | 322 |
| BseXI | GCAGC | 1 cut(s) | 611 |
| BsgI | GTGCAG | 1 cut(s) | 219 |
| Bsh1236I | CGCG | 1 cut(s) | 7 |
| BshFI | GGCC | 1 cut(s) | 562 |
| BsiHKAI | GWGCWC | 1 cut(s) | 322 |
| BsiSI | CCGG | 1 cut(s) | 725 |
| BslFI | GGGAC | 1 cut(s) | 559 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 715 |
| BsmFI | GGGAC | 1 cut(s) | 559 |
| BsnI | GGCC | 1 cut(s) | 562 |
| Bsp1286I | GDGCHC | 1 cut(s) | 322 |
| Bsp13I | TCCGGA | 1 cut(s) | 724 |
| Bsp143I | GATC | 4 cut(s) | 67, 84, 423, 667 |
| Bsp19I | CCATGG | 1 cut(s) | 427 |
| BspACI | CCGC | 1 cut(s) | 785 |
| BspANI | GGCC | 1 cut(s) | 562 |
| BspCNI | CTCAG | 2 cut(s) | 837, 880 |
| BspEI | TCCGGA | 1 cut(s) | 724 |
| BspFNI | CGCG | 1 cut(s) | 7 |
| BspPI | GGATC | 2 cut(s) | 92, 418 |
| BsrDI | GCAATG | 1 cut(s) | 683 |
| BssECI | CCNNGG | 1 cut(s) | 427 |
| BssMI | GATC | 4 cut(s) | 67, 84, 423, 667 |
| BssT1I | CCWWGG | 1 cut(s) | 427 |
| Bst4CI | ACNGT | 6 cut(s) | 339, 529, 749, 837, 880, 923 |
| Bst6I | CTCTTC | 1 cut(s) | 617 |
| BstC8I | GCNNGC | 1 cut(s) | 419 |
| BstDEI | CTNAG | 4 cut(s) | 174, 799, 845, 888 |
| BstDSI | CCRYGG | 1 cut(s) | 427 |
| BstF5I | GGATG | 2 cut(s) | 696, 704 |
| BstFNI | CGCG | 1 cut(s) | 7 |
| BstKTI | GATC | 4 cut(s) | 70, 87, 426, 670 |
| BstMBI | GATC | 4 cut(s) | 67, 84, 423, 667 |
| BstNSI | RCATGY | 2 cut(s) | 242, 457 |
| BstSFI | CTRYAG | 1 cut(s) | 477 |
| BstSLI | GKGCMC | 1 cut(s) | 322 |
| BstUI | CGCG | 1 cut(s) | 7 |
| BstV1I | GCAGC | 1 cut(s) | 611 |
| BstX2I | RGATCY | 1 cut(s) | 667 |
| BstYI | RGATCY | 1 cut(s) | 667 |
| BsuI | GTATCC | 3 cut(s) | 838, 881, 924 |
| BsuRI | GGCC | 1 cut(s) | 562 |
| BtgI | CCRYGG | 1 cut(s) | 427 |
| BtrI | CACGTC | 1 cut(s) | 95 |
| BtsCI | GGATG | 2 cut(s) | 696, 704 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 5 cut(s) | 344, 384, 842, 885, 928 |
| Cac8I | GCNNGC | 1 cut(s) | 419 |
| CviAII | CATG | 4 cut(s) | 239, 428, 454, 772 |
| CviJI | RGCY | 8 cut(s) | 173, 325, 350, 417, 421, 557, 562, 753 |
| CviKI_1 | RGCY | 8 cut(s) | 173, 325, 350, 417, 421, 557, 562, 753 |
| DdeI | CTNAG | 4 cut(s) | 174, 799, 845, 888 |
| DpnI | GATC | 4 cut(s) | 69, 86, 425, 669 |
| DpnII | GATC | 4 cut(s) | 67, 84, 423, 667 |
| DraI | TTTAAA | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 1 cut(s) | 617 |
| EarI | CTCTTC | 1 cut(s) | 617 |
| Eco130I | CCWWGG | 1 cut(s) | 427 |
| EcoT14I | CCWWGG | 1 cut(s) | 427 |
| ErhI | CCWWGG | 1 cut(s) | 427 |
| FaeI | CATG | 4 cut(s) | 242, 431, 457, 775 |
| FaqI | GGGAC | 1 cut(s) | 559 |
| FatI | CATG | 4 cut(s) | 238, 427, 453, 771 |
| FauNDI | CATATG | 1 cut(s) | 550 |
| Fnu4HI | GCNGC | 1 cut(s) | 600 |
| FokI | GGATG | 2 cut(s) | 683, 691 |
| Fsp4HI | GCNGC | 1 cut(s) | 600 |
| GluI | GCNGC | 1 cut(s) | 600 |
| HaeIII | GGCC | 1 cut(s) | 562 |
| HapII | CCGG | 1 cut(s) | 725 |
| Hin1II | CATG | 4 cut(s) | 242, 431, 457, 775 |
| HinfI | GANTC | 6 cut(s) | 56, 229, 485, 680, 849, 892 |
| HpaII | CCGG | 1 cut(s) | 725 |
| HphI | GGTGA | 1 cut(s) | 455 |
| Hpy166II | GTNNAC | 1 cut(s) | 320 |
| Hpy188I | TCNGA | 6 cut(s) | 585, 846, 859, 889, 902, 932 |
| Hpy188III | TCNNGA | 7 cut(s) | 65, 98, 233, 523, 533, 671, 725 |
| Hpy8I | GTNNAC | 1 cut(s) | 320 |
| HpyAV | CCTTC | 3 cut(s) | 130, 135, 769 |
| HpyCH4III | ACNGT | 6 cut(s) | 339, 529, 749, 837, 880, 923 |
| HpyCH4IV | ACGT | 1 cut(s) | 94 |
| HpyCH4V | TGCA | 6 cut(s) | 44, 74, 200, 320, 411, 704 |
| HpyF3I | CTNAG | 4 cut(s) | 174, 799, 845, 888 |
| HpySE526I | ACGT | 1 cut(s) | 94 |
| Hsp92II | CATG | 4 cut(s) | 242, 431, 457, 775 |
| Kpn2I | TCCGGA | 1 cut(s) | 724 |
| Kzo9I | GATC | 4 cut(s) | 67, 84, 423, 667 |
| LmnI | GCTCC | 2 cut(s) | 263, 727 |
| LpnPI | CCDG | 7 cut(s) | 6, 228, 246, 431, 656, 714, 738 |
| Lsp1109I | GCAGC | 1 cut(s) | 611 |
| LweI | GCATC | 2 cut(s) | 526, 713 |
| MaeII | ACGT | 1 cut(s) | 94 |
| MalI | GATC | 4 cut(s) | 69, 86, 425, 669 |
| MboI | GATC | 4 cut(s) | 67, 84, 423, 667 |
| MboII | GAAGA | 8 cut(s) | 44, 51, 65, 172, 631, 634, 650, 677 |
| MfeI | CAATTG | 2 cut(s) | 327, 387 |
| MflI | RGATCY | 1 cut(s) | 667 |
| MhlI | GDGCHC | 1 cut(s) | 322 |
| MluCI | AATT | 8 cut(s) | 35, 147, 327, 344, 360, 387, 465, 576 |
| MmeI | TCCRAC | 1 cut(s) | 608 |
| MroI | TCCGGA | 1 cut(s) | 724 |
| MseI | TTAA | 3 cut(s) | 117, 185, 711 |
| MslI | CAYNNNNRTG | 1 cut(s) | 458 |
| MspA1I | CMGCKG | 1 cut(s) | 421 |
| MspI | CCGG | 1 cut(s) | 725 |
| MunI | CAATTG | 2 cut(s) | 327, 387 |
| MvnI | CGCG | 1 cut(s) | 7 |
| NcoI | CCATGG | 1 cut(s) | 427 |
| NdeI | CATATG | 1 cut(s) | 550 |
| NdeII | GATC | 4 cut(s) | 67, 84, 423, 667 |
| NlaIII | CATG | 4 cut(s) | 242, 431, 457, 775 |
| NspI | RCATGY | 2 cut(s) | 242, 457 |
| PfeI | GAWTC | 6 cut(s) | 56, 229, 485, 680, 849, 892 |
| PkrI | GCNGC | 1 cut(s) | 601 |
| PsuI | RGATCY | 1 cut(s) | 667 |
| PvuII | CAGCTG | 1 cut(s) | 421 |
| RseI | CAYNNNNRTG | 1 cut(s) | 458 |
| SaqAI | TTAA | 3 cut(s) | 117, 185, 711 |
| SatI | GCNGC | 1 cut(s) | 600 |
| Sau3AI | GATC | 4 cut(s) | 67, 84, 423, 667 |
| SduI | GDGCHC | 1 cut(s) | 322 |
| SfaNI | GCATC | 2 cut(s) | 526, 713 |
| SfcI | CTRYAG | 1 cut(s) | 477 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 458 |
| Sse9I | AATT | 8 cut(s) | 35, 147, 327, 344, 360, 387, 465, 576 |
| SsiI | CCGC | 1 cut(s) | 785 |
| StyI | CCWWGG | 1 cut(s) | 427 |
| TaaI | ACNGT | 6 cut(s) | 339, 529, 749, 837, 880, 923 |
| TaiI | ACGT | 1 cut(s) | 97 |
| TasI | AATT | 8 cut(s) | 35, 147, 327, 344, 360, 387, 465, 576 |
| TfiI | GAWTC | 6 cut(s) | 56, 229, 485, 680, 849, 892 |
| Tru1I | TTAA | 3 cut(s) | 117, 185, 711 |
| Tru9I | TTAA | 3 cut(s) | 117, 185, 711 |
| TscAI | CASTG | 5 cut(s) | 344, 384, 842, 885, 928 |
| TseI | GCWGC | 1 cut(s) | 599 |
| TspDTI | ATGAA | 8 cut(s) | 353, 531, 632, 672, 748, 788, 841, 884 |
| TspRI | CASTG | 5 cut(s) | 344, 384, 842, 885, 928 |
| VneI | GTGCAC | 1 cut(s) | 318 |
| XceI | RCATGY | 2 cut(s) | 242, 457 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 425 |