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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 103 |
| AccB1I | GGYRCC | 1 cut(s) | 103 |
| AccII | CGCG | 1 cut(s) | 555 |
| AciI | CCGC | 2 cut(s) | 555, 741 |
| AclWI | GGATC | 2 cut(s) | 248, 261 |
| AcsI | RAATTY | 2 cut(s) | 972, 1117 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AfaI | GTAC | 2 cut(s) | 105, 552 |
| AgsI | TTSAA | 6 cut(s) | 365, 761, 886, 896, 1076, 1124 |
| AluBI | AGCT | 5 cut(s) | 221, 613, 800, 855, 991 |
| AluI | AGCT | 5 cut(s) | 221, 613, 800, 855, 991 |
| Alw26I | GTCTC | 2 cut(s) | 294, 380 |
| AlwI | GGATC | 2 cut(s) | 248, 261 |
| Ama87I | CYCGRG | 1 cut(s) | 161 |
| ApeKI | GCWGC | 1 cut(s) | 852 |
| ApoI | RAATTY | 2 cut(s) | 972, 1117 |
| AseI | ATTAAT | 1 cut(s) | 1089 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 756 |
| Asp718I | GGTACC | 1 cut(s) | 103 |
| AspS9I | GGNCC | 2 cut(s) | 289, 943 |
| AsuC2I | CCSGG | 1 cut(s) | 543 |
| AsuHPI | GGTGA | 2 cut(s) | 419, 798 |
| AsuNHI | GCTAGC | 1 cut(s) | 221 |
| AvaI | CYCGRG | 1 cut(s) | 161 |
| AvaII | GGWCC | 2 cut(s) | 289, 943 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 95, 128 |
| BamHI | GGATCC | 1 cut(s) | 253 |
| BanI | GGYRCC | 1 cut(s) | 103 |
| BbvCI | CCTCAGC | 1 cut(s) | 684 |
| BbvI | GCAGC | 1 cut(s) | 864 |
| BccI | CCATC | 6 cut(s) | 385, 389, 398, 706, 776, 977 |
| BclI | TGATCA | 1 cut(s) | 409 |
| BcnI | CCSGG | 1 cut(s) | 543 |
| BcoDI | GTCTC | 2 cut(s) | 294, 380 |
| BfaI | CTAG | 6 cut(s) | 12, 222, 435, 656, 729, 861 |
| BisI | GCNGC | 2 cut(s) | 741, 853 |
| BlsI | GCNGC | 2 cut(s) | 742, 854 |
| Bme1390I | CCNGG | 1 cut(s) | 543 |
| Bme18I | GGWCC | 2 cut(s) | 289, 943 |
| BmeT110I | CYCGRG | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 2 cut(s) | 289, 943 |
| BmiI | GGNNCC | 4 cut(s) | 105, 255, 290, 291 |
| BmrFI | CCNGG | 1 cut(s) | 543 |
| BmsI | GCATC | 3 cut(s) | 196, 253, 783 |
| BmtI | GCTAGC | 1 cut(s) | 225 |
| Bpu10I | CCTNAGC | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 1 cut(s) | 890 |
| BpuMI | CCSGG | 1 cut(s) | 543 |
| BsaBI | GATNNNNATC | 3 cut(s) | 27, 408, 468 |
| BsaJI | CCNNGG | 1 cut(s) | 307 |
| Bse3DI | GCAATG | 1 cut(s) | 678 |
| Bse8I | GATNNNNATC | 3 cut(s) | 27, 408, 468 |
| BseDI | CCNNGG | 1 cut(s) | 307 |
| BseGI | GGATG | 4 cut(s) | 328, 377, 973, 988 |
| BseJI | GATNNNNATC | 3 cut(s) | 27, 408, 468 |
| BseMI | GCAATG | 1 cut(s) | 678 |
| BseMII | CTCAG | 2 cut(s) | 525, 675 |
| BseRI | GAGGAG | 5 cut(s) | 341, 677, 977, 1034, 1037 |
| BseXI | GCAGC | 1 cut(s) | 864 |
| Bsh1236I | CGCG | 1 cut(s) | 555 |
| BshNI | GGYRCC | 1 cut(s) | 103 |
| BsiHKCI | CYCGRG | 1 cut(s) | 161 |
| BsiSI | CCGG | 1 cut(s) | 543 |
| BslFI | GGGAC | 2 cut(s) | 275, 525 |
| BsmAI | GTCTC | 2 cut(s) | 294, 380 |
| BsmFI | GGGAC | 2 cut(s) | 275, 525 |
| BsoBI | CYCGRG | 1 cut(s) | 161 |
| Bsp143I | GATC | 2 cut(s) | 253, 409 |
| BspACI | CCGC | 2 cut(s) | 555, 741 |
| BspCNI | CTCAG | 2 cut(s) | 526, 676 |
| BspFNI | CGCG | 1 cut(s) | 555 |
| BspLI | GGNNCC | 4 cut(s) | 105, 255, 290, 291 |
| BspOI | GCTAGC | 1 cut(s) | 225 |
| BspPI | GGATC | 2 cut(s) | 248, 261 |
| BspT107I | GGYRCC | 1 cut(s) | 103 |
| BsrDI | GCAATG | 1 cut(s) | 678 |
| BssECI | CCNNGG | 1 cut(s) | 307 |
| BssMI | GATC | 2 cut(s) | 253, 409 |
| BssT1I | CCWWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 2 cut(s) | 108, 1100 |
| BstC8I | GCNNGC | 2 cut(s) | 223, 798 |
| BstDEI | CTNAG | 3 cut(s) | 217, 534, 684 |
| BstF5I | GGATG | 4 cut(s) | 328, 377, 973, 988 |
| BstFNI | CGCG | 1 cut(s) | 555 |
| BstKTI | GATC | 2 cut(s) | 256, 412 |
| BstMAI | GTCTC | 2 cut(s) | 294, 380 |
| BstMBI | GATC | 2 cut(s) | 253, 409 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 914 |
| BstNSI | RCATGY | 1 cut(s) | 8 |
| BstSCI | CCNGG | 1 cut(s) | 541 |
| BstUI | CGCG | 1 cut(s) | 555 |
| BstV1I | GCAGC | 1 cut(s) | 864 |
| BstX2I | RGATCY | 1 cut(s) | 253 |
| BstYI | RGATCY | 1 cut(s) | 253 |
| BtgZI | GCGATG | 1 cut(s) | 807 |
| BtsCI | GGATG | 4 cut(s) | 328, 377, 973, 988 |
| Cac8I | GCNNGC | 2 cut(s) | 223, 798 |
| Cfr13I | GGNCC | 2 cut(s) | 289, 943 |
| CseI | GACGC | 1 cut(s) | 419 |
| Csp6I | GTAC | 2 cut(s) | 104, 551 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 435, 457, 470, 492 |
| CviAII | CATG | 2 cut(s) | 5, 227 |
| CviQI | GTAC | 2 cut(s) | 104, 551 |
| DdeI | CTNAG | 3 cut(s) | 217, 534, 684 |
| DpnI | GATC | 2 cut(s) | 255, 411 |
| DpnII | GATC | 2 cut(s) | 253, 409 |
| DraI | TTTAAA | 1 cut(s) | 115 |
| Eco130I | CCWWGG | 1 cut(s) | 307 |
| Eco32I | GATATC | 1 cut(s) | 340 |
| Eco47I | GGWCC | 2 cut(s) | 289, 943 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| Eco88I | CYCGRG | 1 cut(s) | 161 |
| EcoO109I | RGGNCCY | 1 cut(s) | 289 |
| EcoRV | GATATC | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 1 cut(s) | 307 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 307 |
| FaeI | CATG | 2 cut(s) | 8, 230 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 183, 215, 727, 759 |
| FaqI | GGGAC | 2 cut(s) | 275, 525 |
| FatI | CATG | 2 cut(s) | 4, 226 |
| FbaI | TGATCA | 1 cut(s) | 409 |
| Fnu4HI | GCNGC | 2 cut(s) | 741, 853 |
| FokI | GGATG | 4 cut(s) | 335, 364, 980, 995 |
| Fsp4HI | GCNGC | 2 cut(s) | 741, 853 |
| FspBI | CTAG | 6 cut(s) | 12, 222, 435, 656, 729, 861 |
| GluI | GCNGC | 2 cut(s) | 741, 853 |
| HapII | CCGG | 1 cut(s) | 543 |
| HgaI | GACGC | 1 cut(s) | 419 |
| Hin1II | CATG | 2 cut(s) | 8, 230 |
| HincII | GTYRAC | 1 cut(s) | 866 |
| HindII | GTYRAC | 1 cut(s) | 866 |
| HinfI | GANTC | 4 cut(s) | 317, 464, 757, 803 |
| HpaII | CCGG | 1 cut(s) | 543 |
| HphI | GGTGA | 2 cut(s) | 419, 798 |
| Hpy166II | GTNNAC | 3 cut(s) | 85, 168, 866 |
| Hpy188I | TCNGA | 4 cut(s) | 183, 322, 513, 1047 |
| Hpy188III | TCNNGA | 2 cut(s) | 385, 533 |
| Hpy8I | GTNNAC | 3 cut(s) | 85, 168, 866 |
| HpyAV | CCTTC | 3 cut(s) | 488, 588, 868 |
| HpyCH4III | ACNGT | 2 cut(s) | 108, 1100 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 17, 584, 1058 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 914 |
| HpyF3I | CTNAG | 3 cut(s) | 217, 534, 684 |
| Hsp92II | CATG | 2 cut(s) | 8, 230 |
| KflI | GGGWCCC | 1 cut(s) | 289 |
| KpnI | GGTACC | 1 cut(s) | 107 |
| Ksp22I | TGATCA | 1 cut(s) | 409 |
| Kzo9I | GATC | 2 cut(s) | 253, 409 |
| LmnI | GCTCC | 3 cut(s) | 715, 988, 1066 |
| Lsp1109I | GCAGC | 1 cut(s) | 864 |
| LweI | GCATC | 3 cut(s) | 196, 253, 783 |
| MaeI | CTAG | 6 cut(s) | 12, 222, 435, 656, 729, 861 |
| MaeIII | GTNAC | 2 cut(s) | 817, 1106 |
| MalI | GATC | 2 cut(s) | 255, 411 |
| MboI | GATC | 2 cut(s) | 253, 409 |
| MboII | GAAGA | 4 cut(s) | 347, 635, 661, 934 |
| MflI | RGATCY | 1 cut(s) | 253 |
| MluCI | AATT | 6 cut(s) | 421, 723, 972, 1086, 1090, 1117 |
| MlyI | GAGTC | 1 cut(s) | 797 |
| MmeI | TCCRAC | 1 cut(s) | 687 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 756 |
| MseI | TTAA | 7 cut(s) | 114, 147, 201, 231, 645, 1040, 1089 |
| MslI | CAYNNNNRTG | 1 cut(s) | 201 |
| MspA1I | CMGCKG | 2 cut(s) | 800, 855 |
| MspI | CCGG | 1 cut(s) | 543 |
| MspR9I | CCNGG | 1 cut(s) | 543 |
| MvnI | CGCG | 1 cut(s) | 555 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 914 |
| NciI | CCSGG | 1 cut(s) | 543 |
| NdeII | GATC | 2 cut(s) | 253, 409 |
| NheI | GCTAGC | 1 cut(s) | 221 |
| NlaIII | CATG | 2 cut(s) | 8, 230 |
| NlaIV | GGNNCC | 4 cut(s) | 105, 255, 290, 291 |
| NmuCI | GTSAC | 2 cut(s) | 817, 1106 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 8 |
| PdmI | GAANNNNTTC | 1 cut(s) | 756 |
| PfeI | GAWTC | 3 cut(s) | 317, 464, 757 |
| PkrI | GCNGC | 2 cut(s) | 742, 854 |
| PleI | GAGTC | 1 cut(s) | 797 |
| PpsI | GAGTC | 1 cut(s) | 797 |
| PpuMI | RGGWCCY | 1 cut(s) | 289 |
| PshBI | ATTAAT | 1 cut(s) | 1089 |
| Psp5II | RGGWCCY | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 4 cut(s) | 105, 255, 290, 291 |
| PspPI | GGNCC | 2 cut(s) | 289, 943 |
| PspPPI | RGGWCCY | 1 cut(s) | 289 |
| PsuI | RGATCY | 1 cut(s) | 253 |
| PvuII | CAGCTG | 2 cut(s) | 800, 855 |
| RsaI | GTAC | 2 cut(s) | 105, 552 |
| RsaNI | GTAC | 2 cut(s) | 104, 551 |
| RseI | CAYNNNNRTG | 1 cut(s) | 201 |
| SaqAI | TTAA | 7 cut(s) | 114, 147, 201, 231, 645, 1040, 1089 |
| SatI | GCNGC | 2 cut(s) | 741, 853 |
| Sau3AI | GATC | 2 cut(s) | 253, 409 |
| Sau96I | GGNCC | 2 cut(s) | 289, 943 |
| SchI | GAGTC | 1 cut(s) | 797 |
| ScrFI | CCNGG | 1 cut(s) | 543 |
| SfaNI | GCATC | 3 cut(s) | 196, 253, 783 |
| SinI | GGWCC | 2 cut(s) | 289, 943 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 201 |
| SmlI | CTYRAG | 1 cut(s) | 869 |
| SmoI | CTYRAG | 1 cut(s) | 869 |
| Sse9I | AATT | 6 cut(s) | 421, 723, 972, 1086, 1090, 1117 |
| SsiI | CCGC | 2 cut(s) | 555, 741 |
| SspI | AATATT | 1 cut(s) | 240 |
| SspMI | CTAG | 6 cut(s) | 12, 222, 435, 656, 729, 861 |
| StyD4I | CCNGG | 1 cut(s) | 541 |
| StyI | CCWWGG | 1 cut(s) | 307 |
| TaaI | ACNGT | 2 cut(s) | 108, 1100 |
| TaqI | TCGA | 4 cut(s) | 261, 342, 384, 1010 |
| TasI | AATT | 6 cut(s) | 421, 723, 972, 1086, 1090, 1117 |
| TauI | GCSGC | 1 cut(s) | 743 |
| TfiI | GAWTC | 3 cut(s) | 317, 464, 757 |
| Tru1I | TTAA | 7 cut(s) | 114, 147, 201, 231, 645, 1040, 1089 |
| Tru9I | TTAA | 7 cut(s) | 114, 147, 201, 231, 645, 1040, 1089 |
| TseFI | GTSAC | 2 cut(s) | 817, 1106 |
| TseI | GCWGC | 1 cut(s) | 852 |
| Tsp45I | GTSAC | 2 cut(s) | 817, 1106 |
| TspDTI | ATGAA | 4 cut(s) | 171, 456, 581, 984 |
| VpaK11BI | GGWCC | 2 cut(s) | 289, 943 |
| VspI | ATTAAT | 1 cut(s) | 1089 |
| XapI | RAATTY | 2 cut(s) | 972, 1117 |
| XceI | RCATGY | 1 cut(s) | 8 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 703 |
| XmnI | GAANNNNTTC | 1 cut(s) | 756 |
| XspI | CTAG | 6 cut(s) | 12, 222, 435, 656, 729, 861 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |