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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 281 |
| AciI | CCGC | 1 cut(s) | 381 |
| AclWI | GGATC | 2 cut(s) | 434, 447 |
| AcoI | YGGCCR | 1 cut(s) | 352 |
| AcsI | RAATTY | 1 cut(s) | 109 |
| AcvI | CACGTG | 1 cut(s) | 317 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 40 |
| AgsI | TTSAA | 3 cut(s) | 127, 229, 448 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 96, 128, 295, 327, 440, 472 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 479, 511 |
| AluBI | AGCT | 2 cut(s) | 189, 326 |
| AluI | AGCT | 2 cut(s) | 189, 326 |
| AlwI | GGATC | 2 cut(s) | 434, 447 |
| AoxI | GGCC | 1 cut(s) | 352 |
| ApeKI | GCWGC | 2 cut(s) | 189, 511 |
| ApoI | RAATTY | 1 cut(s) | 109 |
| AseI | ATTAAT | 1 cut(s) | 153 |
| BalI | TGGCCA | 1 cut(s) | 354 |
| BamHI | GGATCC | 1 cut(s) | 439 |
| BanI | GGYRCC | 1 cut(s) | 281 |
| BanII | GRGCYC | 1 cut(s) | 388 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 445, 477 |
| BbrPI | CACGTG | 1 cut(s) | 317 |
| BbsI | GAAGAC | 2 cut(s) | 86, 426 |
| BbvI | GCAGC | 2 cut(s) | 176, 523 |
| BccI | CCATC | 2 cut(s) | 206, 235 |
| BfmI | CTRYAG | 3 cut(s) | 270, 321, 462 |
| BisI | GCNGC | 2 cut(s) | 190, 512 |
| BlsI | GCNGC | 2 cut(s) | 191, 513 |
| BmiI | GGNNCC | 2 cut(s) | 283, 441 |
| BmsI | GCATC | 2 cut(s) | 38, 384 |
| BpiI | GAAGAC | 2 cut(s) | 86, 426 |
| BsaAI | YACGTR | 1 cut(s) | 317 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 40 |
| Bse1I | ACTGG | 1 cut(s) | 498 |
| Bse3DI | GCAATG | 1 cut(s) | 8 |
| BseGI | GGATG | 3 cut(s) | 29, 339, 399 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 40 |
| BseMI | GCAATG | 1 cut(s) | 8 |
| BseNI | ACTGG | 1 cut(s) | 498 |
| BseXI | GCAGC | 2 cut(s) | 176, 523 |
| BsgI | GTGCAG | 1 cut(s) | 76 |
| BshFI | GGCC | 1 cut(s) | 354 |
| BshNI | GGYRCC | 1 cut(s) | 281 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 354 |
| Bsp1286I | GDGCHC | 1 cut(s) | 388 |
| Bsp143I | GATC | 1 cut(s) | 439 |
| BspACI | CCGC | 1 cut(s) | 381 |
| BspANI | GGCC | 1 cut(s) | 354 |
| BspHI | TCATGA | 1 cut(s) | 415 |
| BspLI | GGNNCC | 2 cut(s) | 283, 441 |
| BspPI | GGATC | 2 cut(s) | 434, 447 |
| BspT107I | GGYRCC | 1 cut(s) | 281 |
| BsrDI | GCAATG | 1 cut(s) | 8 |
| BsrI | ACTGG | 1 cut(s) | 498 |
| BssMI | GATC | 1 cut(s) | 439 |
| Bst4CI | ACNGT | 2 cut(s) | 403, 522 |
| Bst6I | CTCTTC | 1 cut(s) | 443 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 10 |
| BstBAI | YACGTR | 1 cut(s) | 317 |
| BstF5I | GGATG | 3 cut(s) | 29, 339, 399 |
| BstKTI | GATC | 1 cut(s) | 442 |
| BstMBI | GATC | 1 cut(s) | 439 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstNSI | RCATGY | 1 cut(s) | 52 |
| BstSFI | CTRYAG | 3 cut(s) | 270, 321, 462 |
| BstV1I | GCAGC | 2 cut(s) | 176, 523 |
| BstV2I | GAAGAC | 2 cut(s) | 86, 426 |
| BstX2I | RGATCY | 1 cut(s) | 439 |
| BstYI | RGATCY | 1 cut(s) | 439 |
| BsuRI | GGCC | 1 cut(s) | 354 |
| BtsCI | GGATG | 3 cut(s) | 29, 339, 399 |
| BtsIMutI | CAGTG | 1 cut(s) | 505 |
| CciI | TCATGA | 1 cut(s) | 415 |
| CviAII | CATG | 5 cut(s) | 49, 169, 218, 416, 545 |
| CviJI | RGCY | 6 cut(s) | 189, 326, 354, 386, 461, 526 |
| CviKI_1 | RGCY | 6 cut(s) | 189, 326, 354, 386, 461, 526 |
| DpnI | GATC | 1 cut(s) | 441 |
| DpnII | GATC | 1 cut(s) | 439 |
| EaeI | YGGCCR | 1 cut(s) | 352 |
| Eam1104I | CTCTTC | 1 cut(s) | 443 |
| EarI | CTCTTC | 1 cut(s) | 443 |
| Eco24I | GRGCYC | 1 cut(s) | 388 |
| Eco72I | CACGTG | 1 cut(s) | 317 |
| EcoT22I | ATGCAT | 1 cut(s) | 50 |
| EcoT38I | GRGCYC | 1 cut(s) | 388 |
| FaeI | CATG | 5 cut(s) | 52, 172, 221, 419, 548 |
| FatI | CATG | 5 cut(s) | 48, 168, 217, 415, 544 |
| FauI | CCCGC | 1 cut(s) | 374 |
| Fnu4HI | GCNGC | 2 cut(s) | 190, 512 |
| FokI | GGATG | 3 cut(s) | 16, 346, 406 |
| FriOI | GRGCYC | 1 cut(s) | 388 |
| Fsp4HI | GCNGC | 2 cut(s) | 190, 512 |
| GluI | GCNGC | 2 cut(s) | 190, 512 |
| HaeIII | GGCC | 1 cut(s) | 354 |
| Hin1II | CATG | 5 cut(s) | 52, 172, 221, 419, 548 |
| Hpy166II | GTNNAC | 3 cut(s) | 314, 430, 487 |
| Hpy188III | TCNNGA | 1 cut(s) | 416 |
| Hpy8I | GTNNAC | 3 cut(s) | 314, 430, 487 |
| HpyAV | CCTTC | 4 cut(s) | 139, 166, 469, 542 |
| HpyCH4III | ACNGT | 2 cut(s) | 403, 522 |
| HpyCH4IV | ACGT | 1 cut(s) | 316 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 29, 48, 93, 192, 344, 503 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpySE526I | ACGT | 1 cut(s) | 316 |
| Hsp92II | CATG | 5 cut(s) | 52, 172, 221, 419, 548 |
| Kzo9I | GATC | 1 cut(s) | 439 |
| LpnPI | CCDG | 5 cut(s) | 39, 316, 368, 450, 511 |
| Lsp1109I | GCAGC | 2 cut(s) | 176, 523 |
| LweI | GCATC | 2 cut(s) | 38, 384 |
| MaeII | ACGT | 1 cut(s) | 316 |
| MalI | GATC | 1 cut(s) | 441 |
| MboI | GATC | 1 cut(s) | 439 |
| MboII | GAAGA | 5 cut(s) | 91, 206, 431, 460, 465 |
| MfeI | CAATTG | 1 cut(s) | 303 |
| MflI | RGATCY | 1 cut(s) | 439 |
| MhlI | GDGCHC | 1 cut(s) | 388 |
| MlsI | TGGCCA | 1 cut(s) | 354 |
| MluCI | AATT | 3 cut(s) | 84, 109, 303 |
| MluNI | TGGCCA | 1 cut(s) | 354 |
| MmeI | TCCRAC | 1 cut(s) | 235 |
| MnlI | CCTC | 2 cut(s) | 423, 554 |
| Mox20I | TGGCCA | 1 cut(s) | 354 |
| Mph1103I | ATGCAT | 1 cut(s) | 50 |
| MscI | TGGCCA | 1 cut(s) | 354 |
| MseI | TTAA | 3 cut(s) | 36, 138, 153 |
| Msp20I | TGGCCA | 1 cut(s) | 354 |
| MunI | CAATTG | 1 cut(s) | 303 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NdeII | GATC | 1 cut(s) | 439 |
| NlaIII | CATG | 5 cut(s) | 52, 172, 221, 419, 548 |
| NlaIV | GGNNCC | 2 cut(s) | 283, 441 |
| NsiI | ATGCAT | 1 cut(s) | 50 |
| NspI | RCATGY | 1 cut(s) | 52 |
| PagI | TCATGA | 1 cut(s) | 415 |
| PkrI | GCNGC | 2 cut(s) | 191, 513 |
| PmaCI | CACGTG | 1 cut(s) | 317 |
| PmlI | CACGTG | 1 cut(s) | 317 |
| Ppu21I | YACGTR | 1 cut(s) | 317 |
| PshBI | ATTAAT | 1 cut(s) | 153 |
| PspCI | CACGTG | 1 cut(s) | 317 |
| PspN4I | GGNNCC | 2 cut(s) | 283, 441 |
| PsuI | RGATCY | 1 cut(s) | 439 |
| SaqAI | TTAA | 3 cut(s) | 36, 138, 153 |
| SatI | GCNGC | 2 cut(s) | 190, 512 |
| Sau3AI | GATC | 1 cut(s) | 439 |
| SduI | GDGCHC | 1 cut(s) | 388 |
| SetI | ASST | 4 cut(s) | 98, 191, 319, 328 |
| SfaNI | GCATC | 2 cut(s) | 38, 384 |
| SfcI | CTRYAG | 3 cut(s) | 270, 321, 462 |
| Sse9I | AATT | 3 cut(s) | 84, 109, 303 |
| SsiI | CCGC | 1 cut(s) | 381 |
| TaaI | ACNGT | 2 cut(s) | 403, 522 |
| TaiI | ACGT | 1 cut(s) | 319 |
| TaqI | TCGA | 1 cut(s) | 246 |
| TasI | AATT | 3 cut(s) | 84, 109, 303 |
| Tru1I | TTAA | 3 cut(s) | 36, 138, 153 |
| Tru9I | TTAA | 3 cut(s) | 36, 138, 153 |
| TscAI | CASTG | 1 cut(s) | 505 |
| TseI | GCWGC | 2 cut(s) | 189, 511 |
| TspDTI | ATGAA | 6 cut(s) | 117, 185, 206, 432, 521, 561 |
| TspRI | CASTG | 1 cut(s) | 505 |
| VspI | ATTAAT | 1 cut(s) | 153 |
| XapI | RAATTY | 1 cut(s) | 109 |
| XceI | RCATGY | 1 cut(s) | 52 |
| Zsp2I | ATGCAT | 1 cut(s) | 50 |