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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 130 |
| Acc65I | GGTACC | 1 cut(s) | 2044 |
| AccB1I | GGYRCC | 2 cut(s) | 616, 2044 |
| AciI | CCGC | 3 cut(s) | 614, 914, 1795 |
| AclWI | GGATC | 3 cut(s) | 225, 526, 750 |
| AcoI | YGGCCR | 1 cut(s) | 1792 |
| AcsI | RAATTY | 4 cut(s) | 825, 1299, 1785, 1910 |
| AcuI | CTGAAG | 3 cut(s) | 395, 1188, 1611 |
| AfaI | GTAC | 9 cut(s) | 698, 1263, 1322, 1440, 1461, 1552, 1652, 2046, 2086 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 146, 197, 510, 1804 |
| AflII | CTTAAG | 1 cut(s) | 299 |
| AflIII | ACRYGT | 2 cut(s) | 1553, 2081 |
| AgeI | ACCGGT | 1 cut(s) | 365 |
| AgsI | TTSAA | 8 cut(s) | 88, 676, 725, 847, 1034, 1114, 1400, 2146 |
| AjnI | CCWGG | 1 cut(s) | 765 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 128, 160, 993, 1025, 1139, 1145, 1171, 1177 |
| AleI | CACNNNNGTG | 1 cut(s) | 1478 |
| Alw26I | GTCTC | 2 cut(s) | 256, 892 |
| AlwI | GGATC | 3 cut(s) | 225, 526, 750 |
| AoxI | GGCC | 7 cut(s) | 1107, 1131, 1265, 1413, 1565, 1731, 1792 |
| ApeKI | GCWGC | 4 cut(s) | 203, 653, 1083, 1921 |
| ApoI | RAATTY | 4 cut(s) | 825, 1299, 1785, 1910 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2009, 2041 |
| AseI | ATTAAT | 1 cut(s) | 1239 |
| AsiGI | ACCGGT | 1 cut(s) | 365 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1299 |
| Asp718I | GGTACC | 1 cut(s) | 2044 |
| AspS9I | GGNCC | 1 cut(s) | 1731 |
| AsuHPI | GGTGA | 6 cut(s) | 110, 162, 409, 1029, 1465, 1750 |
| AsuNHI | GCTAGC | 1 cut(s) | 836 |
| BaeGI | GKGCMC | 1 cut(s) | 2127 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1542, 1575 |
| BanI | GGYRCC | 2 cut(s) | 616, 2044 |
| BanII | GRGCYC | 1 cut(s) | 1993 |
| BbsI | GAAGAC | 2 cut(s) | 108, 488 |
| BbvI | GCAGC | 4 cut(s) | 215, 640, 1095, 1908 |
| BccI | CCATC | 1 cut(s) | 1769 |
| BceAI | ACGGC | 1 cut(s) | 1280 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 192, 226, 1598, 1632 |
| BciT130I | CCWGG | 1 cut(s) | 767 |
| BclI | TGATCA | 1 cut(s) | 1666 |
| BcoDI | GTCTC | 2 cut(s) | 256, 892 |
| BfaI | CTAG | 6 cut(s) | 174, 743, 837, 1028, 1569, 2154 |
| BfmI | CTRYAG | 2 cut(s) | 18, 36 |
| BfrI | CTTAAG | 1 cut(s) | 299 |
| BfuAI | ACCTGC | 1 cut(s) | 130 |
| BisI | GCNGC | 5 cut(s) | 204, 654, 1084, 1795, 1922 |
| BlsI | GCNGC | 5 cut(s) | 205, 655, 1085, 1796, 1923 |
| Bme1390I | CCNGG | 1 cut(s) | 767 |
| BmgT120I | GGNCC | 1 cut(s) | 1731 |
| BmiI | GGNNCC | 4 cut(s) | 6, 471, 618, 2046 |
| BmrFI | CCNGG | 1 cut(s) | 767 |
| BmsI | GCATC | 4 cut(s) | 486, 595, 1875, 1908 |
| BmtI | GCTAGC | 1 cut(s) | 840 |
| BpiI | GAAGAC | 2 cut(s) | 108, 488 |
| BpuEI | CTTGAG | 1 cut(s) | 447 |
| Bsa29I | ATCGAT | 1 cut(s) | 754 |
| BsaBI | GATNNNNATC | 2 cut(s) | 750, 1665 |
| BsaJI | CCNNGG | 3 cut(s) | 222, 1432, 1836 |
| BsaWI | WCCGGW | 3 cut(s) | 311, 365, 1303 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 971, 1001 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 146, 197, 510, 1804 |
| Bse118I | RCCGGY | 1 cut(s) | 365 |
| Bse1I | ACTGG | 3 cut(s) | 642, 1046, 1084 |
| Bse3DI | GCAATG | 2 cut(s) | 909, 1219 |
| Bse8I | GATNNNNATC | 2 cut(s) | 750, 1665 |
| BseBI | CCWGG | 1 cut(s) | 767 |
| BseCI | ATCGAT | 1 cut(s) | 754 |
| BseDI | CCNNGG | 3 cut(s) | 222, 1432, 1836 |
| BseGI | GGATG | 4 cut(s) | 571, 610, 1683, 1761 |
| BseJI | GATNNNNATC | 2 cut(s) | 750, 1665 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 146, 197, 510, 1804 |
| BseMI | GCAATG | 2 cut(s) | 909, 1219 |
| BseMII | CTCAG | 2 cut(s) | 1119, 1964 |
| BseNI | ACTGG | 3 cut(s) | 642, 1046, 1084 |
| BseRI | GAGGAG | 3 cut(s) | 908, 932, 995 |
| BseSI | GKGCMC | 1 cut(s) | 2127 |
| BseX3I | CGGCCG | 1 cut(s) | 1792 |
| BseXI | GCAGC | 4 cut(s) | 215, 640, 1095, 1908 |
| BsgI | GTGCAG | 3 cut(s) | 93, 222, 1907 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1795 |
| BshFI | GGCC | 7 cut(s) | 1109, 1133, 1267, 1415, 1567, 1733, 1794 |
| BshNI | GGYRCC | 2 cut(s) | 616, 2044 |
| BshTI | ACCGGT | 1 cut(s) | 365 |
| BshVI | ATCGAT | 1 cut(s) | 754 |
| BsiEI | CGRYCG | 1 cut(s) | 1795 |
| BsiSI | CCGG | 3 cut(s) | 312, 366, 1304 |
| BslFI | GGGAC | 3 cut(s) | 831, 947, 2077 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 146, 197, 510, 1804 |
| BsmAI | GTCTC | 2 cut(s) | 256, 892 |
| BsmFI | GGGAC | 3 cut(s) | 831, 947, 2077 |
| BsnI | GGCC | 7 cut(s) | 1109, 1133, 1267, 1415, 1567, 1733, 1794 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1993, 2127 |
| Bsp1407I | TGTACA | 2 cut(s) | 696, 2084 |
| Bsp143I | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| Bsp19I | CCATGG | 2 cut(s) | 1432, 1836 |
| BspACI | CCGC | 3 cut(s) | 614, 914, 1795 |
| BspANI | GGCC | 7 cut(s) | 1109, 1133, 1267, 1415, 1567, 1733, 1794 |
| BspCNI | CTCAG | 2 cut(s) | 1120, 1963 |
| BspDI | ATCGAT | 1 cut(s) | 754 |
| BspHI | TCATGA | 1 cut(s) | 1669 |
| BspLI | GGNNCC | 4 cut(s) | 6, 471, 618, 2046 |
| BspMI | ACCTGC | 1 cut(s) | 130 |
| BspOI | GCTAGC | 1 cut(s) | 840 |
| BspPI | GGATC | 3 cut(s) | 225, 526, 750 |
| BspT107I | GGYRCC | 2 cut(s) | 616, 2044 |
| BspTI | CTTAAG | 1 cut(s) | 299 |
| BsrDI | GCAATG | 2 cut(s) | 909, 1219 |
| BsrFI | RCCGGY | 1 cut(s) | 365 |
| BsrGI | TGTACA | 2 cut(s) | 696, 2084 |
| BsrI | ACTGG | 3 cut(s) | 642, 1046, 1084 |
| BssAI | RCCGGY | 1 cut(s) | 365 |
| BssECI | CCNNGG | 3 cut(s) | 222, 1432, 1836 |
| BssMI | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| BssT1I | CCWWGG | 3 cut(s) | 222, 1432, 1836 |
| Bst2UI | CCWGG | 1 cut(s) | 767 |
| Bst4CI | ACNGT | 2 cut(s) | 19, 1261 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 1014, 1164 |
| BstAFI | CTTAAG | 1 cut(s) | 299 |
| BstAUI | TGTACA | 2 cut(s) | 696, 2084 |
| BstC8I | GCNNGC | 5 cut(s) | 320, 838, 1107, 1219, 1961 |
| BstDEI | CTNAG | 6 cut(s) | 255, 927, 1128, 1352, 1950, 2056 |
| BstDSI | CCRYGG | 2 cut(s) | 1432, 1836 |
| BstEII | GGTNACC | 1 cut(s) | 1756 |
| BstF5I | GGATG | 4 cut(s) | 571, 610, 1683, 1761 |
| BstKTI | GATC | 4 cut(s) | 233, 534, 758, 1669 |
| BstMAI | GTCTC | 2 cut(s) | 256, 892 |
| BstMBI | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| BstMCI | CGRYCG | 1 cut(s) | 1795 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 379, 1172, 1218, 2012 |
| BstNI | CCWGG | 1 cut(s) | 767 |
| BstNSI | RCATGY | 3 cut(s) | 809, 1557, 2085 |
| BstPI | GGTNACC | 1 cut(s) | 1756 |
| BstSCI | CCNGG | 1 cut(s) | 765 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 36 |
| BstSLI | GKGCMC | 1 cut(s) | 2127 |
| BstV1I | GCAGC | 4 cut(s) | 215, 640, 1095, 1908 |
| BstV2I | GAAGAC | 2 cut(s) | 108, 488 |
| BstX2I | RGATCY | 2 cut(s) | 230, 531 |
| BstYI | RGATCY | 2 cut(s) | 230, 531 |
| BstZI | CGGCCG | 1 cut(s) | 1792 |
| Bsu15I | ATCGAT | 1 cut(s) | 754 |
| BsuRI | GGCC | 7 cut(s) | 1109, 1133, 1267, 1415, 1567, 1733, 1794 |
| BsuTUI | ATCGAT | 1 cut(s) | 754 |
| BtgI | CCRYGG | 2 cut(s) | 1432, 1836 |
| BtsCI | GGATG | 4 cut(s) | 571, 610, 1683, 1761 |
| BtsI | GCAGTG | 2 cut(s) | 63, 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 63, 105, 1053 |
| BveI | ACCTGC | 1 cut(s) | 130 |
| Cac8I | GCNNGC | 5 cut(s) | 320, 838, 1107, 1219, 1961 |
| CciI | TCATGA | 1 cut(s) | 1669 |
| Cfr10I | RCCGGY | 1 cut(s) | 365 |
| Cfr13I | GGNCC | 1 cut(s) | 1731 |
| ClaI | ATCGAT | 1 cut(s) | 754 |
| Csp6I | GTAC | 9 cut(s) | 697, 1262, 1321, 1439, 1460, 1551, 1651, 2045, 2085 |
| CspAI | ACCGGT | 1 cut(s) | 365 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1123, 1158 |
| CviQI | GTAC | 9 cut(s) | 697, 1262, 1321, 1439, 1460, 1551, 1651, 2045, 2085 |
| DdeI | CTNAG | 6 cut(s) | 255, 927, 1128, 1352, 1950, 2056 |
| DpnI | GATC | 4 cut(s) | 232, 533, 757, 1668 |
| DpnII | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| DraI | TTTAAA | 1 cut(s) | 1819 |
| EaeI | YGGCCR | 1 cut(s) | 1792 |
| EagI | CGGCCG | 1 cut(s) | 1792 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 1014, 1164 |
| EarI | CTCTTC | 3 cut(s) | 62, 1014, 1164 |
| EclXI | CGGCCG | 1 cut(s) | 1792 |
| Eco130I | CCWWGG | 3 cut(s) | 222, 1432, 1836 |
| Eco147I | AGGCCT | 1 cut(s) | 1109 |
| Eco24I | GRGCYC | 1 cut(s) | 1993 |
| Eco32I | GATATC | 1 cut(s) | 781 |
| Eco52I | CGGCCG | 1 cut(s) | 1792 |
| Eco57I | CTGAAG | 3 cut(s) | 395, 1188, 1611 |
| Eco91I | GGTNACC | 1 cut(s) | 1756 |
| EcoO65I | GGTNACC | 1 cut(s) | 1756 |
| EcoRII | CCWGG | 1 cut(s) | 765 |
| EcoRV | GATATC | 1 cut(s) | 781 |
| EcoT14I | CCWWGG | 3 cut(s) | 222, 1432, 1836 |
| EcoT22I | ATGCAT | 2 cut(s) | 610, 811 |
| EcoT38I | GRGCYC | 1 cut(s) | 1993 |
| ErhI | CCWWGG | 3 cut(s) | 222, 1432, 1836 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 920, 952 |
| FaqI | GGGAC | 3 cut(s) | 831, 947, 2077 |
| FbaI | TGATCA | 1 cut(s) | 1666 |
| Fnu4HI | GCNGC | 5 cut(s) | 204, 654, 1084, 1795, 1922 |
| FokI | GGATG | 4 cut(s) | 578, 617, 1670, 1748 |
| FriOI | GRGCYC | 1 cut(s) | 1993 |
| Fsp4HI | GCNGC | 5 cut(s) | 204, 654, 1084, 1795, 1922 |
| FspBI | CTAG | 6 cut(s) | 174, 743, 837, 1028, 1569, 2154 |
| GluI | GCNGC | 5 cut(s) | 204, 654, 1084, 1795, 1922 |
| HaeIII | GGCC | 7 cut(s) | 1109, 1133, 1267, 1415, 1567, 1733, 1794 |
| HapII | CCGG | 3 cut(s) | 312, 366, 1304 |
| HindIII | AAGCTT | 2 cut(s) | 296, 1573 |
| HinfI | GANTC | 6 cut(s) | 406, 857, 1001, 1034, 1740, 1975 |
| HpaII | CCGG | 3 cut(s) | 312, 366, 1304 |
| HphI | GGTGA | 6 cut(s) | 110, 162, 409, 1029, 1465, 1750 |
| Hpy166II | GTNNAC | 5 cut(s) | 187, 1309, 1370, 1439, 2087 |
| Hpy188I | TCNGA | 2 cut(s) | 1123, 1953 |
| Hpy188III | TCNNGA | 6 cut(s) | 743, 1092, 1244, 1273, 1670, 2146 |
| Hpy8I | GTNNAC | 5 cut(s) | 187, 1309, 1370, 1439, 2087 |
| HpyAV | CCTTC | 8 cut(s) | 46, 277, 321, 1108, 1243, 1597, 1843, 1945 |
| HpyCH4III | ACNGT | 2 cut(s) | 19, 1261 |
| HpyCH4IV | ACGT | 1 cut(s) | 360 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 379, 1172, 1218, 2012 |
| HpyF3I | CTNAG | 6 cut(s) | 255, 927, 1128, 1352, 1950, 2056 |
| HpySE526I | ACGT | 1 cut(s) | 360 |
| KpnI | GGTACC | 1 cut(s) | 2048 |
| Ksp22I | TGATCA | 1 cut(s) | 1666 |
| Kzo9I | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| LmnI | GCTCC | 6 cut(s) | 10, 330, 1102, 1606, 1641, 1717 |
| Lsp1109I | GCAGC | 4 cut(s) | 215, 640, 1095, 1908 |
| LweI | GCATC | 4 cut(s) | 486, 595, 1875, 1908 |
| MaeI | CTAG | 6 cut(s) | 174, 743, 837, 1028, 1569, 2154 |
| MaeII | ACGT | 1 cut(s) | 360 |
| MaeIII | GTNAC | 7 cut(s) | 168, 361, 397, 1048, 1345, 1471, 1756 |
| MalI | GATC | 4 cut(s) | 232, 533, 757, 1668 |
| MboI | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| MfeI | CAATTG | 2 cut(s) | 474, 1392 |
| MflI | RGATCY | 2 cut(s) | 230, 531 |
| MhlI | GDGCHC | 2 cut(s) | 1993, 2127 |
| MlyI | GAGTC | 1 cut(s) | 866 |
| MmeI | TCCRAC | 4 cut(s) | 258, 528, 1137, 2003 |
| Mph1103I | ATGCAT | 2 cut(s) | 610, 811 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1299 |
| MslI | CAYNNNNRTG | 4 cut(s) | 512, 1478, 1871, 1874 |
| MspA1I | CMGCKG | 2 cut(s) | 653, 1086 |
| MspCI | CTTAAG | 1 cut(s) | 299 |
| MspI | CCGG | 3 cut(s) | 312, 366, 1304 |
| MspR9I | CCNGG | 1 cut(s) | 767 |
| MunI | CAATTG | 2 cut(s) | 474, 1392 |
| MvaI | CCWGG | 1 cut(s) | 767 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 379, 1172, 1218, 2012 |
| NcoI | CCATGG | 2 cut(s) | 1432, 1836 |
| NdeII | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| NheI | GCTAGC | 1 cut(s) | 836 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 471, 618, 2046 |
| NmuCI | GTSAC | 5 cut(s) | 168, 397, 1048, 1471, 1756 |
| NsiI | ATGCAT | 2 cut(s) | 610, 811 |
| NspI | RCATGY | 3 cut(s) | 809, 1557, 2085 |
| OliI | CACNNNNGTG | 1 cut(s) | 1478 |
| PagI | TCATGA | 1 cut(s) | 1669 |
| PceI | AGGCCT | 1 cut(s) | 1109 |
| PciI | ACATGT | 2 cut(s) | 1553, 2081 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1299 |
| PfeI | GAWTC | 5 cut(s) | 406, 1001, 1034, 1740, 1975 |
| PinAI | ACCGGT | 1 cut(s) | 365 |
| PkrI | GCNGC | 5 cut(s) | 205, 655, 1085, 1796, 1923 |
| PleI | GAGTC | 1 cut(s) | 865 |
| PpsI | GAGTC | 1 cut(s) | 865 |
| PscI | ACATGT | 2 cut(s) | 1553, 2081 |
| PshBI | ATTAAT | 1 cut(s) | 1239 |
| Psp6I | CCWGG | 1 cut(s) | 765 |
| PspEI | GGTNACC | 1 cut(s) | 1756 |
| PspGI | CCWGG | 1 cut(s) | 765 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 471, 618, 2046 |
| PspPI | GGNCC | 1 cut(s) | 1731 |
| PsuI | RGATCY | 2 cut(s) | 230, 531 |
| PvuII | CAGCTG | 2 cut(s) | 653, 1086 |
| RsaI | GTAC | 9 cut(s) | 698, 1263, 1322, 1440, 1461, 1552, 1652, 2046, 2086 |
| RsaNI | GTAC | 9 cut(s) | 697, 1262, 1321, 1439, 1460, 1551, 1651, 2045, 2085 |
| RseI | CAYNNNNRTG | 4 cut(s) | 512, 1478, 1871, 1874 |
| SatI | GCNGC | 5 cut(s) | 204, 654, 1084, 1795, 1922 |
| Sau3AI | GATC | 4 cut(s) | 230, 531, 755, 1666 |
| Sau96I | GGNCC | 1 cut(s) | 1731 |
| SchI | GAGTC | 1 cut(s) | 866 |
| ScrFI | CCNGG | 1 cut(s) | 767 |
| SduI | GDGCHC | 2 cut(s) | 1993, 2127 |
| SfaNI | GCATC | 4 cut(s) | 486, 595, 1875, 1908 |
| SfcI | CTRYAG | 2 cut(s) | 18, 36 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 512, 1478, 1871, 1874 |
| SmlI | CTYRAG | 2 cut(s) | 299, 462 |
| SmoI | CTYRAG | 2 cut(s) | 299, 462 |
| SseBI | AGGCCT | 1 cut(s) | 1109 |
| SsiI | CCGC | 3 cut(s) | 614, 914, 1795 |
| SspMI | CTAG | 6 cut(s) | 174, 743, 837, 1028, 1569, 2154 |
| StuI | AGGCCT | 1 cut(s) | 1109 |
| StyD4I | CCNGG | 1 cut(s) | 765 |
| StyI | CCWWGG | 3 cut(s) | 222, 1432, 1836 |
| TaaI | ACNGT | 2 cut(s) | 19, 1261 |
| TaiI | ACGT | 1 cut(s) | 363 |
| TaqI | TCGA | 5 cut(s) | 212, 450, 754, 1093, 2117 |
| TatI | WGTACW | 2 cut(s) | 696, 2084 |
| TauI | GCSGC | 1 cut(s) | 1797 |
| TfiI | GAWTC | 5 cut(s) | 406, 1001, 1034, 1740, 1975 |
| TscAI | CASTG | 3 cut(s) | 63, 112, 1053 |
| TseFI | GTSAC | 5 cut(s) | 168, 397, 1048, 1471, 1756 |
| TseI | GCWGC | 4 cut(s) | 203, 653, 1083, 1921 |
| Tsp45I | GTSAC | 5 cut(s) | 168, 397, 1048, 1471, 1756 |
| TspRI | CASTG | 3 cut(s) | 63, 112, 1053 |
| Vha464I | CTTAAG | 1 cut(s) | 299 |
| VspI | ATTAAT | 1 cut(s) | 1239 |
| XapI | RAATTY | 4 cut(s) | 825, 1299, 1785, 1910 |
| XbaI | TCTAGA | 1 cut(s) | 742 |
| XceI | RCATGY | 3 cut(s) | 809, 1557, 2085 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 286 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1299 |
| XspI | CTAG | 6 cut(s) | 174, 743, 837, 1028, 1569, 2154 |
| Zsp2I | ATGCAT | 2 cut(s) | 610, 811 |