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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 668 |
| AarI | CACCTGC | 1 cut(s) | 35 |
| Acc36I | ACCTGC | 2 cut(s) | 35, 634 |
| AccBSI | CCGCTC | 1 cut(s) | 274 |
| AccI | GTMKAC | 1 cut(s) | 480 |
| AciI | CCGC | 1 cut(s) | 274 |
| AclWI | GGATC | 1 cut(s) | 729 |
| AcsI | RAATTY | 1 cut(s) | 377 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 91, 130, 203, 273, 650, 701 |
| AflII | CTTAAG | 1 cut(s) | 803 |
| AgsI | TTSAA | 3 cut(s) | 262, 296, 442 |
| AjnI | CCWGG | 1 cut(s) | 84 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 632, 664 |
| AluBI | AGCT | 4 cut(s) | 320, 533, 539, 686 |
| AluI | AGCT | 4 cut(s) | 320, 533, 539, 686 |
| Alw21I | GWGCWC | 1 cut(s) | 236 |
| AlwI | GGATC | 1 cut(s) | 729 |
| Ama87I | CYCGRG | 1 cut(s) | 208 |
| AoxI | GGCC | 6 cut(s) | 104, 167, 193, 198, 205, 227 |
| ApeKI | GCWGC | 3 cut(s) | 524, 686, 707 |
| ApoI | RAATTY | 1 cut(s) | 377 |
| AspS9I | GGNCC | 7 cut(s) | 50, 104, 168, 194, 199, 206, 227 |
| AsuC2I | CCSGG | 5 cut(s) | 156, 192, 197, 226, 242 |
| AsuHPI | GGTGA | 2 cut(s) | 614, 666 |
| AsuNHI | GCTAGC | 1 cut(s) | 40 |
| AvaI | CYCGRG | 1 cut(s) | 208 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BanII | GRGCYC | 2 cut(s) | 161, 215 |
| BauI | CACGAG | 2 cut(s) | 160, 235 |
| BbsI | GAAGAC | 1 cut(s) | 612 |
| Bbv12I | GWGCWC | 1 cut(s) | 236 |
| BbvI | GCAGC | 3 cut(s) | 536, 673, 719 |
| BccI | CCATC | 1 cut(s) | 499 |
| BceAI | ACGGC | 2 cut(s) | 108, 214 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 696, 730 |
| BciT130I | CCWGG | 1 cut(s) | 86 |
| BciVI | GTATCC | 1 cut(s) | 74 |
| BcnI | CCSGG | 5 cut(s) | 156, 192, 197, 226, 242 |
| BfaI | CTAG | 4 cut(s) | 41, 108, 339, 678 |
| BfmI | CTRYAG | 2 cut(s) | 522, 540 |
| BfrI | CTTAAG | 1 cut(s) | 803 |
| BfuAI | ACCTGC | 2 cut(s) | 35, 634 |
| BfuI | GTATCC | 1 cut(s) | 74 |
| BisI | GCNGC | 3 cut(s) | 525, 687, 708 |
| BlsI | GCNGC | 3 cut(s) | 526, 688, 709 |
| Bme1390I | CCNGG | 6 cut(s) | 86, 156, 192, 197, 226, 242 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmeT110I | CYCGRG | 1 cut(s) | 208 |
| BmgT120I | GGNCC | 7 cut(s) | 50, 104, 168, 194, 199, 206, 227 |
| BmiI | GGNNCC | 3 cut(s) | 432, 510, 814 |
| BmrFI | CCNGG | 6 cut(s) | 86, 156, 192, 197, 226, 242 |
| BmsI | GCATC | 2 cut(s) | 313, 480 |
| BmtI | GCTAGC | 1 cut(s) | 44 |
| BpiI | GAAGAC | 1 cut(s) | 612 |
| BpuMI | CCSGG | 5 cut(s) | 156, 192, 197, 226, 242 |
| BsaJI | CCNNGG | 3 cut(s) | 202, 267, 726 |
| BsaWI | WCCGGW | 1 cut(s) | 815 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 91, 130, 203, 273, 650, 701 |
| Bse3DI | GCAATG | 1 cut(s) | 333 |
| BseBI | CCWGG | 1 cut(s) | 86 |
| BseDI | CCNNGG | 3 cut(s) | 202, 267, 726 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 91, 130, 203, 273, 650, 701 |
| BseMI | GCAATG | 1 cut(s) | 333 |
| BseXI | GCAGC | 3 cut(s) | 536, 673, 719 |
| BsgI | GTGCAG | 2 cut(s) | 597, 726 |
| BshFI | GGCC | 6 cut(s) | 106, 169, 195, 200, 207, 229 |
| BsiHKAI | GWGCWC | 1 cut(s) | 236 |
| BsiHKCI | CYCGRG | 1 cut(s) | 208 |
| BsiSI | CCGG | 6 cut(s) | 155, 192, 197, 225, 241, 816 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 91, 130, 203, 273, 650, 701 |
| BsnI | GGCC | 6 cut(s) | 106, 169, 195, 200, 207, 229 |
| BsoBI | CYCGRG | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 3 cut(s) | 161, 215, 236 |
| Bsp143I | GATC | 1 cut(s) | 734 |
| Bsp19I | CCATGG | 1 cut(s) | 202 |
| BspACI | CCGC | 1 cut(s) | 274 |
| BspANI | GGCC | 6 cut(s) | 106, 169, 195, 200, 207, 229 |
| BspLI | GGNNCC | 3 cut(s) | 432, 510, 814 |
| BspMAI | CTGCAG | 1 cut(s) | 526 |
| BspMI | ACCTGC | 2 cut(s) | 35, 634 |
| BspOI | GCTAGC | 1 cut(s) | 44 |
| BspPI | GGATC | 1 cut(s) | 729 |
| BspTI | CTTAAG | 1 cut(s) | 803 |
| BsrBI | CCGCTC | 1 cut(s) | 274 |
| BsrDI | GCAATG | 1 cut(s) | 333 |
| BssECI | CCNNGG | 3 cut(s) | 202, 267, 726 |
| BssMI | GATC | 1 cut(s) | 734 |
| BssSI | CACGAG | 2 cut(s) | 160, 235 |
| BssT1I | CCWWGG | 3 cut(s) | 202, 267, 726 |
| Bst2BI | CACGAG | 2 cut(s) | 160, 235 |
| Bst2UI | CCWGG | 1 cut(s) | 86 |
| Bst4CI | ACNGT | 1 cut(s) | 386 |
| Bst6I | CTCTTC | 1 cut(s) | 566 |
| BstAFI | CTTAAG | 1 cut(s) | 803 |
| BstC8I | GCNNGC | 4 cut(s) | 42, 167, 318, 824 |
| BstDEI | CTNAG | 1 cut(s) | 759 |
| BstDSI | CCRYGG | 1 cut(s) | 202 |
| BstKTI | GATC | 1 cut(s) | 737 |
| BstMBI | GATC | 1 cut(s) | 734 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 530, 819 |
| BstNI | CCWGG | 1 cut(s) | 86 |
| BstSCI | CCNGG | 6 cut(s) | 84, 154, 190, 195, 224, 240 |
| BstSFI | CTRYAG | 2 cut(s) | 522, 540 |
| BstV1I | GCAGC | 3 cut(s) | 536, 673, 719 |
| BstV2I | GAAGAC | 1 cut(s) | 612 |
| BstX2I | RGATCY | 1 cut(s) | 734 |
| BstYI | RGATCY | 1 cut(s) | 734 |
| BsuI | GTATCC | 1 cut(s) | 74 |
| BsuRI | GGCC | 6 cut(s) | 106, 169, 195, 200, 207, 229 |
| BtgI | CCRYGG | 1 cut(s) | 202 |
| BtsI | GCAGTG | 2 cut(s) | 567, 609 |
| BtsIMutI | CAGTG | 2 cut(s) | 567, 609 |
| BveI | ACCTGC | 2 cut(s) | 35, 634 |
| Cac8I | GCNNGC | 4 cut(s) | 42, 167, 318, 824 |
| Cfr13I | GGNCC | 7 cut(s) | 50, 104, 168, 194, 199, 206, 227 |
| CsiI | ACCWGGT | 1 cut(s) | 84 |
| CviAII | CATG | 2 cut(s) | 203, 827 |
| DdeI | CTNAG | 1 cut(s) | 759 |
| DpnI | GATC | 1 cut(s) | 736 |
| DpnII | GATC | 1 cut(s) | 734 |
| Eam1104I | CTCTTC | 1 cut(s) | 566 |
| EarI | CTCTTC | 1 cut(s) | 566 |
| Eco130I | CCWWGG | 3 cut(s) | 202, 267, 726 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 215 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| Eco88I | CYCGRG | 1 cut(s) | 208 |
| EcoRII | CCWGG | 1 cut(s) | 84 |
| EcoT14I | CCWWGG | 3 cut(s) | 202, 267, 726 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 215 |
| ErhI | CCWWGG | 3 cut(s) | 202, 267, 726 |
| FaeI | CATG | 2 cut(s) | 206, 830 |
| FaiI | YATR | 7 cut(s) | 204, 217, 374, 420, 542, 668, 828 |
| FatI | CATG | 2 cut(s) | 202, 826 |
| FauI | CCCGC | 1 cut(s) | 267 |
| FblI | GTMKAC | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 3 cut(s) | 525, 687, 708 |
| FriOI | GRGCYC | 2 cut(s) | 161, 215 |
| Fsp4HI | GCNGC | 3 cut(s) | 525, 687, 708 |
| FspBI | CTAG | 4 cut(s) | 41, 108, 339, 678 |
| GluI | GCNGC | 3 cut(s) | 525, 687, 708 |
| HaeIII | GGCC | 6 cut(s) | 106, 169, 195, 200, 207, 229 |
| HapII | CCGG | 6 cut(s) | 155, 192, 197, 225, 241, 816 |
| Hin1II | CATG | 2 cut(s) | 206, 830 |
| HinfI | GANTC | 1 cut(s) | 306 |
| HpaII | CCGG | 6 cut(s) | 155, 192, 197, 225, 241, 816 |
| HphI | GGTGA | 2 cut(s) | 614, 666 |
| Hpy166II | GTNNAC | 4 cut(s) | 50, 481, 495, 799 |
| Hpy188I | TCNGA | 2 cut(s) | 25, 435 |
| Hpy8I | GTNNAC | 4 cut(s) | 50, 481, 495, 799 |
| HpyAV | CCTTC | 3 cut(s) | 550, 781, 825 |
| HpyCH4III | ACNGT | 1 cut(s) | 386 |
| HpyCH4V | TGCA | 9 cut(s) | 316, 326, 331, 344, 524, 565, 614, 689, 707 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 530, 819 |
| HpyF3I | CTNAG | 1 cut(s) | 759 |
| Hsp92II | CATG | 2 cut(s) | 206, 830 |
| Kzo9I | GATC | 1 cut(s) | 734 |
| LmnI | GCTCC | 3 cut(s) | 271, 514, 818 |
| Lsp1109I | GCAGC | 3 cut(s) | 536, 673, 719 |
| LweI | GCATC | 2 cut(s) | 313, 480 |
| MabI | ACCWGGT | 1 cut(s) | 84 |
| MaeI | CTAG | 4 cut(s) | 41, 108, 339, 678 |
| MaeIII | GTNAC | 1 cut(s) | 672 |
| MalI | GATC | 1 cut(s) | 736 |
| MbiI | CCGCTC | 1 cut(s) | 274 |
| MboI | GATC | 1 cut(s) | 734 |
| MboII | GAAGA | 2 cut(s) | 583, 617 |
| MflI | RGATCY | 1 cut(s) | 734 |
| MhlI | GDGCHC | 3 cut(s) | 161, 215, 236 |
| MluCI | AATT | 2 cut(s) | 377, 645 |
| MlyI | GAGTC | 1 cut(s) | 315 |
| MmeI | TCCRAC | 2 cut(s) | 390, 762 |
| MnlI | CCTC | 2 cut(s) | 27, 85 |
| MseI | TTAA | 4 cut(s) | 179, 186, 246, 804 |
| MspCI | CTTAAG | 1 cut(s) | 803 |
| MspI | CCGG | 6 cut(s) | 155, 192, 197, 225, 241, 816 |
| MspR9I | CCNGG | 6 cut(s) | 86, 156, 192, 197, 226, 242 |
| MvaI | CCWGG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 530, 819 |
| NciI | CCSGG | 5 cut(s) | 156, 192, 197, 226, 242 |
| NcoI | CCATGG | 1 cut(s) | 202 |
| NdeII | GATC | 1 cut(s) | 734 |
| NheI | GCTAGC | 1 cut(s) | 40 |
| NlaIII | CATG | 2 cut(s) | 206, 830 |
| NlaIV | GGNNCC | 3 cut(s) | 432, 510, 814 |
| NmuCI | GTSAC | 1 cut(s) | 672 |
| PaqCI | CACCTGC | 1 cut(s) | 35 |
| PkrI | GCNGC | 3 cut(s) | 526, 688, 709 |
| PleI | GAGTC | 1 cut(s) | 314 |
| PpsI | GAGTC | 1 cut(s) | 314 |
| PsiI | TTATAA | 1 cut(s) | 668 |
| Psp6I | CCWGG | 1 cut(s) | 84 |
| PspGI | CCWGG | 1 cut(s) | 84 |
| PspN4I | GGNNCC | 3 cut(s) | 432, 510, 814 |
| PspPI | GGNCC | 7 cut(s) | 50, 104, 168, 194, 199, 206, 227 |
| PstI | CTGCAG | 1 cut(s) | 526 |
| PsuI | RGATCY | 1 cut(s) | 734 |
| SaqAI | TTAA | 4 cut(s) | 179, 186, 246, 804 |
| SatI | GCNGC | 3 cut(s) | 525, 687, 708 |
| Sau3AI | GATC | 1 cut(s) | 734 |
| Sau96I | GGNCC | 7 cut(s) | 50, 104, 168, 194, 199, 206, 227 |
| SchI | GAGTC | 1 cut(s) | 315 |
| ScrFI | CCNGG | 6 cut(s) | 86, 156, 192, 197, 226, 242 |
| SduI | GDGCHC | 3 cut(s) | 161, 215, 236 |
| SexAI | ACCWGGT | 1 cut(s) | 84 |
| SfaNI | GCATC | 2 cut(s) | 313, 480 |
| SfcI | CTRYAG | 2 cut(s) | 522, 540 |
| SinI | GGWCC | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 803 |
| SmoI | CTYRAG | 1 cut(s) | 803 |
| Sse9I | AATT | 2 cut(s) | 377, 645 |
| SsiI | CCGC | 1 cut(s) | 274 |
| SspMI | CTAG | 4 cut(s) | 41, 108, 339, 678 |
| StyD4I | CCNGG | 6 cut(s) | 84, 154, 190, 195, 224, 240 |
| StyI | CCWWGG | 3 cut(s) | 202, 267, 726 |
| TaaI | ACNGT | 1 cut(s) | 386 |
| TaqI | TCGA | 1 cut(s) | 716 |
| TasI | AATT | 2 cut(s) | 377, 645 |
| Tru1I | TTAA | 4 cut(s) | 179, 186, 246, 804 |
| Tru9I | TTAA | 4 cut(s) | 179, 186, 246, 804 |
| TscAI | CASTG | 2 cut(s) | 567, 616 |
| TseFI | GTSAC | 1 cut(s) | 672 |
| TseI | GCWGC | 3 cut(s) | 524, 686, 707 |
| Tsp45I | GTSAC | 1 cut(s) | 672 |
| TspDTI | ATGAA | 3 cut(s) | 75, 569, 584 |
| TspGWI | ACGGA | 1 cut(s) | 501 |
| TspRI | CASTG | 2 cut(s) | 567, 616 |
| Vha464I | CTTAAG | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XapI | RAATTY | 1 cut(s) | 377 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 790 |
| XmiI | GTMKAC | 1 cut(s) | 480 |
| XspI | CTAG | 4 cut(s) | 41, 108, 339, 678 |