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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 243 |
| AfaI | GTAC | 2 cut(s) | 80, 114 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| AgsI | TTSAA | 5 cut(s) | 40, 68, 359, 373, 391 |
| AjnI | CCWGG | 1 cut(s) | 103 |
| AluBI | AGCT | 3 cut(s) | 221, 257, 268 |
| AluI | AGCT | 3 cut(s) | 221, 257, 268 |
| AoxI | GGCC | 2 cut(s) | 44, 99 |
| ApeKI | GCWGC | 1 cut(s) | 143 |
| AspS9I | GGNCC | 2 cut(s) | 44, 100 |
| AsuC2I | CCSGG | 1 cut(s) | 424 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| AxyI | CCTNAGG | 1 cut(s) | 96 |
| BbsI | GAAGAC | 2 cut(s) | 65, 192 |
| BbvI | GCAGC | 1 cut(s) | 130 |
| BccI | CCATC | 1 cut(s) | 268 |
| BciT130I | CCWGG | 1 cut(s) | 105 |
| BcnI | CCSGG | 1 cut(s) | 424 |
| BfmI | CTRYAG | 1 cut(s) | 180 |
| BisI | GCNGC | 1 cut(s) | 144 |
| BlsI | GCNGC | 1 cut(s) | 145 |
| Bme1390I | CCNGG | 2 cut(s) | 105, 424 |
| BmgT120I | GGNCC | 2 cut(s) | 44, 100 |
| BmiI | GGNNCC | 1 cut(s) | 102 |
| BmrFI | CCNGG | 2 cut(s) | 105, 424 |
| BmsI | GCATC | 1 cut(s) | 292 |
| BpiI | GAAGAC | 2 cut(s) | 65, 192 |
| BpmI | CTGGAG | 1 cut(s) | 290 |
| BpuEI | CTTGAG | 1 cut(s) | 214 |
| BpuMI | CCSGG | 1 cut(s) | 424 |
| BsaJI | CCNNGG | 2 cut(s) | 103, 291 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 302, 332 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| Bse118I | RCCGGY | 2 cut(s) | 46, 139 |
| Bse21I | CCTNAGG | 1 cut(s) | 96 |
| Bse3DI | GCAATG | 2 cut(s) | 240, 285 |
| BseBI | CCWGG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 2 cut(s) | 103, 291 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| BseMI | GCAATG | 2 cut(s) | 240, 285 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseXI | GCAGC | 1 cut(s) | 130 |
| BshFI | GGCC | 2 cut(s) | 46, 101 |
| BsiSI | CCGG | 3 cut(s) | 47, 140, 424 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 108, 109 |
| BsnI | GGCC | 2 cut(s) | 46, 101 |
| BspANI | GGCC | 2 cut(s) | 46, 101 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspLI | GGNNCC | 1 cut(s) | 102 |
| BsrDI | GCAATG | 2 cut(s) | 240, 285 |
| BsrFI | RCCGGY | 2 cut(s) | 46, 139 |
| BssAI | RCCGGY | 2 cut(s) | 46, 139 |
| BssECI | CCNNGG | 2 cut(s) | 103, 291 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst2UI | CCWGG | 1 cut(s) | 105 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 387 |
| Bst6I | CTCTTC | 2 cut(s) | 203, 219 |
| BstC8I | GCNNGC | 2 cut(s) | 48, 141 |
| BstDEI | CTNAG | 1 cut(s) | 96 |
| BstNI | CCWGG | 1 cut(s) | 105 |
| BstSCI | CCNGG | 2 cut(s) | 103, 422 |
| BstSFI | CTRYAG | 1 cut(s) | 180 |
| BstV1I | GCAGC | 1 cut(s) | 130 |
| BstV2I | GAAGAC | 2 cut(s) | 65, 192 |
| Bsu36I | CCTNAGG | 1 cut(s) | 96 |
| BsuRI | GGCC | 2 cut(s) | 46, 101 |
| Cac8I | GCNNGC | 2 cut(s) | 48, 141 |
| Cfr10I | RCCGGY | 2 cut(s) | 46, 139 |
| Cfr13I | GGNCC | 2 cut(s) | 44, 100 |
| Csp6I | GTAC | 2 cut(s) | 79, 113 |
| CviJI | RGCY | 8 cut(s) | 46, 101, 129, 139, 143, 221, 257, 268 |
| CviKI_1 | RGCY | 8 cut(s) | 46, 101, 129, 139, 143, 221, 257, 268 |
| CviQI | GTAC | 2 cut(s) | 79, 113 |
| DdeI | CTNAG | 1 cut(s) | 96 |
| Eam1104I | CTCTTC | 2 cut(s) | 203, 219 |
| EarI | CTCTTC | 2 cut(s) | 203, 219 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 1 cut(s) | 243 |
| Eco81I | CCTNAGG | 1 cut(s) | 96 |
| EcoO109I | RGGNCCY | 1 cut(s) | 100 |
| EcoRII | CCWGG | 1 cut(s) | 103 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaiI | YATR | 1 cut(s) | 158 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 289, 321 |
| Fnu4HI | GCNGC | 1 cut(s) | 144 |
| Fsp4HI | GCNGC | 1 cut(s) | 144 |
| GluI | GCNGC | 1 cut(s) | 144 |
| GsuI | CTGGAG | 1 cut(s) | 290 |
| HaeIII | GGCC | 2 cut(s) | 46, 101 |
| HapII | CCGG | 3 cut(s) | 47, 140, 424 |
| HinfI | GANTC | 2 cut(s) | 176, 365 |
| HpaII | CCGG | 3 cut(s) | 47, 140, 424 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy188III | TCNNGA | 2 cut(s) | 55, 405 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 387 |
| HpyF3I | CTNAG | 1 cut(s) | 96 |
| KroI | GCCGGC | 2 cut(s) | 46, 139 |
| KroNI | GCCGGC | 2 cut(s) | 48, 141 |
| LmnI | GCTCC | 1 cut(s) | 265 |
| Lsp1109I | GCAGC | 1 cut(s) | 130 |
| LweI | GCATC | 1 cut(s) | 292 |
| MboII | GAAGA | 5 cut(s) | 70, 197, 220, 236, 344 |
| MluCI | AATT | 1 cut(s) | 73 |
| MmeI | TCCRAC | 1 cut(s) | 309 |
| MnlI | CCTC | 7 cut(s) | 91, 110, 189, 204, 304, 339, 346 |
| MroNI | GCCGGC | 2 cut(s) | 46, 139 |
| MseI | TTAA | 2 cut(s) | 153, 321 |
| MspI | CCGG | 3 cut(s) | 47, 140, 424 |
| MspR9I | CCNGG | 2 cut(s) | 105, 424 |
| MvaI | CCWGG | 1 cut(s) | 105 |
| NaeI | GCCGGC | 2 cut(s) | 48, 141 |
| NciI | CCSGG | 1 cut(s) | 424 |
| NgoMIV | GCCGGC | 2 cut(s) | 46, 139 |
| NlaIV | GGNNCC | 1 cut(s) | 102 |
| PdiI | GCCGGC | 2 cut(s) | 48, 141 |
| PfeI | GAWTC | 2 cut(s) | 176, 365 |
| PkrI | GCNGC | 1 cut(s) | 145 |
| Psp6I | CCWGG | 1 cut(s) | 103 |
| PspGI | CCWGG | 1 cut(s) | 103 |
| PspN4I | GGNNCC | 1 cut(s) | 102 |
| PspPI | GGNCC | 2 cut(s) | 44, 100 |
| RsaI | GTAC | 2 cut(s) | 80, 114 |
| RsaNI | GTAC | 2 cut(s) | 79, 113 |
| SaqAI | TTAA | 2 cut(s) | 153, 321 |
| SatI | GCNGC | 1 cut(s) | 144 |
| Sau96I | GGNCC | 2 cut(s) | 44, 100 |
| ScrFI | CCNGG | 2 cut(s) | 105, 424 |
| SetI | ASST | 8 cut(s) | 121, 194, 223, 259, 270, 320, 342, 357 |
| SfaNI | GCATC | 1 cut(s) | 292 |
| SfcI | CTRYAG | 1 cut(s) | 180 |
| SmlI | CTYRAG | 1 cut(s) | 193 |
| SmoI | CTYRAG | 1 cut(s) | 193 |
| Sse9I | AATT | 1 cut(s) | 73 |
| StyD4I | CCNGG | 2 cut(s) | 103, 422 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 2 cut(s) | 64, 387 |
| TasI | AATT | 1 cut(s) | 73 |
| TfiI | GAWTC | 2 cut(s) | 176, 365 |
| Tru1I | TTAA | 2 cut(s) | 153, 321 |
| Tru9I | TTAA | 2 cut(s) | 153, 321 |
| TseI | GCWGC | 1 cut(s) | 143 |
| TspDTI | ATGAA | 2 cut(s) | 264, 357 |