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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 30 |
| AciI | CCGC | 1 cut(s) | 30 |
| AcoI | YGGCCR | 1 cut(s) | 382 |
| AcsI | RAATTY | 1 cut(s) | 79 |
| AcuI | CTGAAG | 2 cut(s) | 120, 138 |
| AgsI | TTSAA | 7 cut(s) | 40, 77, 85, 399, 424, 434, 440 |
| AjnI | CCWGG | 2 cut(s) | 170, 384 |
| AluBI | AGCT | 4 cut(s) | 278, 338, 393, 428 |
| AluI | AGCT | 4 cut(s) | 278, 338, 393, 428 |
| AoxI | GGCC | 3 cut(s) | 12, 44, 382 |
| ApeKI | GCWGC | 1 cut(s) | 390 |
| ApoI | RAATTY | 1 cut(s) | 79 |
| AseI | ATTAAT | 1 cut(s) | 318 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspS9I | GGNCC | 2 cut(s) | 13, 44 |
| AsuC2I | CCSGG | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 1 cut(s) | 336 |
| BalI | TGGCCA | 1 cut(s) | 384 |
| BbvI | GCAGC | 1 cut(s) | 402 |
| BccI | CCATC | 2 cut(s) | 244, 446 |
| BciT130I | CCWGG | 2 cut(s) | 172, 386 |
| BcnI | CCSGG | 1 cut(s) | 16 |
| BfaI | CTAG | 3 cut(s) | 194, 267, 469 |
| BisI | GCNGC | 2 cut(s) | 31, 391 |
| BlsI | GCNGC | 2 cut(s) | 32, 392 |
| Bme1390I | CCNGG | 3 cut(s) | 16, 172, 386 |
| BmgT120I | GGNCC | 2 cut(s) | 13, 44 |
| BmrFI | CCNGG | 3 cut(s) | 16, 172, 386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| BpuMI | CCSGG | 1 cut(s) | 16 |
| BsaJI | CCNNGG | 2 cut(s) | 171, 385 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 278, 308 |
| Bse3DI | GCAATG | 1 cut(s) | 216 |
| BseBI | CCWGG | 2 cut(s) | 172, 386 |
| BseDI | CCNNGG | 2 cut(s) | 171, 385 |
| BseMI | GCAATG | 1 cut(s) | 216 |
| BseMII | CTCAG | 2 cut(s) | 150, 236 |
| BseXI | GCAGC | 1 cut(s) | 402 |
| BshFI | GGCC | 3 cut(s) | 14, 46, 384 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BsnI | GGCC | 3 cut(s) | 14, 46, 384 |
| BspACI | CCGC | 1 cut(s) | 30 |
| BspANI | GGCC | 3 cut(s) | 14, 46, 384 |
| BspCNI | CTCAG | 2 cut(s) | 151, 235 |
| BsrBI | CCGCTC | 1 cut(s) | 30 |
| BsrDI | GCAATG | 1 cut(s) | 216 |
| BssECI | CCNNGG | 2 cut(s) | 171, 385 |
| Bst2UI | CCWGG | 2 cut(s) | 172, 386 |
| Bst4CI | ACNGT | 1 cut(s) | 96 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 195 |
| BstC8I | GCNNGC | 1 cut(s) | 48 |
| BstDEI | CTNAG | 2 cut(s) | 159, 222 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 390 |
| BstNI | CCWGG | 2 cut(s) | 172, 386 |
| BstSCI | CCNGG | 3 cut(s) | 14, 170, 384 |
| BstV1I | GCAGC | 1 cut(s) | 402 |
| BsuRI | GGCC | 3 cut(s) | 14, 46, 384 |
| BtgZI | GCGATG | 1 cut(s) | 326 |
| BtsI | GCAGTG | 1 cut(s) | 359 |
| BtsIMutI | CAGTG | 1 cut(s) | 359 |
| Cac8I | GCNNGC | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 2 cut(s) | 13, 44 |
| DdeI | CTNAG | 2 cut(s) | 159, 222 |
| EaeI | YGGCCR | 1 cut(s) | 382 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 195 |
| EarI | CTCTTC | 2 cut(s) | 80, 195 |
| Eco57I | CTGAAG | 2 cut(s) | 120, 138 |
| EcoRII | CCWGG | 2 cut(s) | 170, 384 |
| FaiI | YATR | 2 cut(s) | 165, 167 |
| Fnu4HI | GCNGC | 2 cut(s) | 31, 391 |
| Fsp4HI | GCNGC | 2 cut(s) | 31, 391 |
| FspBI | CTAG | 3 cut(s) | 194, 267, 469 |
| GluI | GCNGC | 2 cut(s) | 31, 391 |
| HaeIII | GGCC | 3 cut(s) | 14, 46, 384 |
| HapII | CCGG | 1 cut(s) | 16 |
| HpaII | CCGG | 1 cut(s) | 16 |
| HphI | GGTGA | 1 cut(s) | 336 |
| Hpy188I | TCNGA | 3 cut(s) | 100, 138, 300 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 158, 224 |
| HpyAV | CCTTC | 3 cut(s) | 55, 95, 113 |
| HpyCH4III | ACNGT | 1 cut(s) | 96 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 390 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 222 |
| LmnI | GCTCC | 2 cut(s) | 253, 455 |
| Lsp1109I | GCAGC | 1 cut(s) | 402 |
| MaeI | CTAG | 3 cut(s) | 194, 267, 469 |
| MaeIII | GTNAC | 1 cut(s) | 355 |
| MbiI | CCGCTC | 1 cut(s) | 30 |
| MboII | GAAGA | 4 cut(s) | 70, 97, 199, 212 |
| MlsI | TGGCCA | 1 cut(s) | 384 |
| MluCI | AATT | 5 cut(s) | 72, 79, 261, 435, 463 |
| MluNI | TGGCCA | 1 cut(s) | 384 |
| MmeI | TCCRAC | 2 cut(s) | 225, 427 |
| MnlI | CCTC | 2 cut(s) | 81, 280 |
| Mox20I | TGGCCA | 1 cut(s) | 384 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 384 |
| MseI | TTAA | 2 cut(s) | 183, 318 |
| Msp20I | TGGCCA | 1 cut(s) | 384 |
| MspA1I | CMGCKG | 1 cut(s) | 393 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 3 cut(s) | 16, 172, 386 |
| MvaI | CCWGG | 2 cut(s) | 172, 386 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 390 |
| NciI | CCSGG | 1 cut(s) | 16 |
| NmuCI | GTSAC | 1 cut(s) | 355 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PkrI | GCNGC | 2 cut(s) | 32, 392 |
| PshBI | ATTAAT | 1 cut(s) | 318 |
| Psp6I | CCWGG | 2 cut(s) | 170, 384 |
| PspGI | CCWGG | 2 cut(s) | 170, 384 |
| PspPI | GGNCC | 2 cut(s) | 13, 44 |
| PvuII | CAGCTG | 1 cut(s) | 393 |
| SaqAI | TTAA | 2 cut(s) | 183, 318 |
| SatI | GCNGC | 2 cut(s) | 31, 391 |
| Sau96I | GGNCC | 2 cut(s) | 13, 44 |
| ScrFI | CCNGG | 3 cut(s) | 16, 172, 386 |
| SetI | ASST | 7 cut(s) | 66, 280, 296, 340, 355, 395, 430 |
| Sse9I | AATT | 5 cut(s) | 72, 79, 261, 435, 463 |
| SsiI | CCGC | 1 cut(s) | 30 |
| SspMI | CTAG | 3 cut(s) | 194, 267, 469 |
| StyD4I | CCNGG | 3 cut(s) | 14, 170, 384 |
| TaaI | ACNGT | 1 cut(s) | 96 |
| TaqI | TCGA | 1 cut(s) | 66 |
| TasI | AATT | 5 cut(s) | 72, 79, 261, 435, 463 |
| TauI | GCSGC | 1 cut(s) | 33 |
| Tru1I | TTAA | 2 cut(s) | 183, 318 |
| Tru9I | TTAA | 2 cut(s) | 183, 318 |
| TscAI | CASTG | 1 cut(s) | 366 |
| TseFI | GTSAC | 1 cut(s) | 355 |
| TseI | GCWGC | 1 cut(s) | 390 |
| Tsp45I | GTSAC | 1 cut(s) | 355 |
| TspRI | CASTG | 1 cut(s) | 366 |
| VspI | ATTAAT | 1 cut(s) | 318 |
| XapI | RAATTY | 1 cut(s) | 79 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 3 cut(s) | 194, 267, 469 |