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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 219 |
| AccB1I | GGYRCC | 1 cut(s) | 219 |
| AccI | GTMKAC | 2 cut(s) | 438, 466 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AciI | CCGC | 1 cut(s) | 72 |
| AclWI | GGATC | 3 cut(s) | 413, 443, 456 |
| AcuI | CTGAAG | 1 cut(s) | 135 |
| AfaI | GTAC | 2 cut(s) | 70, 221 |
| AgsI | TTSAA | 2 cut(s) | 79, 110 |
| AluBI | AGCT | 3 cut(s) | 141, 242, 335 |
| AluI | AGCT | 3 cut(s) | 141, 242, 335 |
| AlwI | GGATC | 3 cut(s) | 413, 443, 456 |
| Ama87I | CYCGRG | 1 cut(s) | 388 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| ApeKI | GCWGC | 2 cut(s) | 135, 138 |
| Asp718I | GGTACC | 1 cut(s) | 219 |
| AspS9I | GGNCC | 2 cut(s) | 50, 321 |
| AsuC2I | CCSGG | 1 cut(s) | 360 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AvaI | CYCGRG | 1 cut(s) | 388 |
| AvaII | GGWCC | 2 cut(s) | 50, 321 |
| BamHI | GGATCC | 1 cut(s) | 448 |
| BanI | GGYRCC | 1 cut(s) | 219 |
| BbsI | GAAGAC | 1 cut(s) | 466 |
| BbvI | GCAGC | 2 cut(s) | 147, 150 |
| BccI | CCATC | 1 cut(s) | 77 |
| BcnI | CCSGG | 1 cut(s) | 360 |
| BisI | GCNGC | 2 cut(s) | 136, 139 |
| BlsI | GCNGC | 2 cut(s) | 137, 140 |
| Bme1390I | CCNGG | 1 cut(s) | 360 |
| Bme18I | GGWCC | 2 cut(s) | 50, 321 |
| BmeT110I | CYCGRG | 1 cut(s) | 388 |
| BmgT120I | GGNCC | 2 cut(s) | 50, 321 |
| BmiI | GGNNCC | 2 cut(s) | 221, 450 |
| BmrFI | CCNGG | 1 cut(s) | 360 |
| BmsI | GCATC | 2 cut(s) | 51, 280 |
| BpiI | GAAGAC | 1 cut(s) | 466 |
| BpuMI | CCSGG | 1 cut(s) | 360 |
| BsaJI | CCNNGG | 2 cut(s) | 21, 177 |
| BsaWI | WCCGGW | 2 cut(s) | 149, 421 |
| Bse1I | ACTGG | 2 cut(s) | 196, 313 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseDI | CCNNGG | 2 cut(s) | 21, 177 |
| BseGI | GGATG | 1 cut(s) | 88 |
| BseMII | CTCAG | 2 cut(s) | 109, 329 |
| BseNI | ACTGG | 2 cut(s) | 196, 313 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 2 cut(s) | 147, 150 |
| BshNI | GGYRCC | 1 cut(s) | 219 |
| BsiHKCI | CYCGRG | 1 cut(s) | 388 |
| BsiSI | CCGG | 3 cut(s) | 150, 359, 422 |
| BslFI | GGGAC | 1 cut(s) | 319 |
| BsmFI | GGGAC | 1 cut(s) | 319 |
| BsmI | GAATGC | 1 cut(s) | 74 |
| BsoBI | CYCGRG | 1 cut(s) | 388 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 3 cut(s) | 394, 418, 448 |
| Bsp19I | CCATGG | 1 cut(s) | 177 |
| BspACI | CCGC | 1 cut(s) | 72 |
| BspCNI | CTCAG | 2 cut(s) | 108, 328 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 2 cut(s) | 221, 450 |
| BspPI | GGATC | 3 cut(s) | 413, 443, 456 |
| BspT107I | GGYRCC | 1 cut(s) | 219 |
| BsrI | ACTGG | 2 cut(s) | 196, 313 |
| BssECI | CCNNGG | 2 cut(s) | 21, 177 |
| BssMI | GATC | 3 cut(s) | 394, 418, 448 |
| BssNAI | GTATAC | 1 cut(s) | 467 |
| BssT1I | CCWWGG | 2 cut(s) | 21, 177 |
| Bst1107I | GTATAC | 1 cut(s) | 467 |
| Bst4CI | ACNGT | 2 cut(s) | 412, 436 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 1 cut(s) | 345 |
| BstDEI | CTNAG | 2 cut(s) | 95, 315 |
| BstDSI | CCRYGG | 1 cut(s) | 177 |
| BstF5I | GGATG | 1 cut(s) | 88 |
| BstKTI | GATC | 3 cut(s) | 397, 421, 451 |
| BstMBI | GATC | 3 cut(s) | 394, 418, 448 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 32 |
| BstSCI | CCNGG | 1 cut(s) | 358 |
| BstV1I | GCAGC | 2 cut(s) | 147, 150 |
| BstV2I | GAAGAC | 1 cut(s) | 466 |
| BstX2I | RGATCY | 1 cut(s) | 448 |
| BstYI | RGATCY | 1 cut(s) | 448 |
| BstZ17I | GTATAC | 1 cut(s) | 467 |
| BtgI | CCRYGG | 1 cut(s) | 177 |
| BtsCI | GGATG | 1 cut(s) | 88 |
| BtsIMutI | CAGTG | 1 cut(s) | 432 |
| Cac8I | GCNNGC | 1 cut(s) | 345 |
| Cfr13I | GGNCC | 2 cut(s) | 50, 321 |
| Csp6I | GTAC | 2 cut(s) | 69, 220 |
| CviAII | CATG | 5 cut(s) | 178, 259, 373, 445, 471 |
| CviJI | RGCY | 5 cut(s) | 11, 141, 242, 335, 343 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 141, 242, 335, 343 |
| CviQI | GTAC | 2 cut(s) | 69, 220 |
| DdeI | CTNAG | 2 cut(s) | 95, 315 |
| DpnI | GATC | 3 cut(s) | 396, 420, 450 |
| DpnII | GATC | 3 cut(s) | 394, 418, 448 |
| Eco130I | CCWWGG | 2 cut(s) | 21, 177 |
| Eco47I | GGWCC | 2 cut(s) | 50, 321 |
| Eco57I | CTGAAG | 1 cut(s) | 135 |
| Eco88I | CYCGRG | 1 cut(s) | 388 |
| EcoT14I | CCWWGG | 2 cut(s) | 21, 177 |
| ErhI | CCWWGG | 2 cut(s) | 21, 177 |
| FaeI | CATG | 5 cut(s) | 181, 262, 376, 448, 474 |
| FaqI | GGGAC | 1 cut(s) | 319 |
| FatI | CATG | 5 cut(s) | 177, 258, 372, 444, 470 |
| FauNDI | CATATG | 1 cut(s) | 55 |
| FblI | GTMKAC | 2 cut(s) | 438, 466 |
| Fnu4HI | GCNGC | 2 cut(s) | 136, 139 |
| FokI | GGATG | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 2 cut(s) | 136, 139 |
| GluI | GCNGC | 2 cut(s) | 136, 139 |
| HapII | CCGG | 3 cut(s) | 150, 359, 422 |
| Hin1II | CATG | 5 cut(s) | 181, 262, 376, 448, 474 |
| HindIII | AAGCTT | 1 cut(s) | 240 |
| HpaII | CCGG | 3 cut(s) | 150, 359, 422 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 4 cut(s) | 256, 274, 439, 467 |
| Hpy188I | TCNGA | 1 cut(s) | 318 |
| Hpy188III | TCNNGA | 3 cut(s) | 48, 89, 422 |
| Hpy8I | GTNNAC | 4 cut(s) | 256, 274, 439, 467 |
| HpyAV | CCTTC | 1 cut(s) | 288 |
| HpyCH4III | ACNGT | 2 cut(s) | 412, 436 |
| HpyCH4IV | ACGT | 1 cut(s) | 463 |
| HpyCH4V | TGCA | 5 cut(s) | 35, 135, 173, 293, 347 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 32 |
| HpyF3I | CTNAG | 2 cut(s) | 95, 315 |
| HpySE526I | ACGT | 1 cut(s) | 463 |
| Hsp92II | CATG | 5 cut(s) | 181, 262, 376, 448, 474 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| KpnI | GGTACC | 1 cut(s) | 223 |
| Kzo9I | GATC | 3 cut(s) | 394, 418, 448 |
| LpnPI | CCDG | 9 cut(s) | 33, 126, 163, 177, 227, 294, 372, 435, 465 |
| Lsp1109I | GCAGC | 2 cut(s) | 147, 150 |
| LweI | GCATC | 2 cut(s) | 51, 280 |
| MaeII | ACGT | 1 cut(s) | 463 |
| MaeIII | GTNAC | 2 cut(s) | 16, 187 |
| MalI | GATC | 3 cut(s) | 396, 420, 450 |
| MboI | GATC | 3 cut(s) | 394, 418, 448 |
| MboII | GAAGA | 2 cut(s) | 471, 499 |
| MflI | RGATCY | 1 cut(s) | 448 |
| MluCI | AATT | 1 cut(s) | 285 |
| MmeI | TCCRAC | 2 cut(s) | 126, 216 |
| MnlI | CCTC | 2 cut(s) | 210, 312 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MspI | CCGG | 3 cut(s) | 150, 359, 422 |
| MspR9I | CCNGG | 1 cut(s) | 360 |
| Mva1269I | GAATGC | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 32 |
| NciI | CCSGG | 1 cut(s) | 360 |
| NcoI | CCATGG | 1 cut(s) | 177 |
| NdeI | CATATG | 1 cut(s) | 55 |
| NdeII | GATC | 3 cut(s) | 394, 418, 448 |
| NlaIII | CATG | 5 cut(s) | 181, 262, 376, 448, 474 |
| NlaIV | GGNNCC | 2 cut(s) | 221, 450 |
| NmuCI | GTSAC | 2 cut(s) | 16, 187 |
| PctI | GAATGC | 1 cut(s) | 74 |
| PflFI | GACNNNGTC | 1 cut(s) | 434 |
| PkrI | GCNGC | 2 cut(s) | 137, 140 |
| PspN4I | GGNNCC | 2 cut(s) | 221, 450 |
| PspPI | GGNCC | 2 cut(s) | 50, 321 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 255, 287 |
| PsuI | RGATCY | 1 cut(s) | 448 |
| PsyI | GACNNNGTC | 1 cut(s) | 434 |
| RsaI | GTAC | 2 cut(s) | 70, 221 |
| RsaNI | GTAC | 2 cut(s) | 69, 220 |
| SatI | GCNGC | 2 cut(s) | 136, 139 |
| Sau3AI | GATC | 3 cut(s) | 394, 418, 448 |
| Sau96I | GGNCC | 2 cut(s) | 50, 321 |
| ScrFI | CCNGG | 1 cut(s) | 360 |
| SfaNI | GCATC | 2 cut(s) | 51, 280 |
| SinI | GGWCC | 2 cut(s) | 50, 321 |
| Sse9I | AATT | 1 cut(s) | 285 |
| SsiI | CCGC | 1 cut(s) | 72 |
| StyD4I | CCNGG | 1 cut(s) | 358 |
| StyI | CCWWGG | 2 cut(s) | 21, 177 |
| TaaI | ACNGT | 2 cut(s) | 412, 436 |
| TaiI | ACGT | 1 cut(s) | 466 |
| TaqI | TCGA | 1 cut(s) | 88 |
| TaqII | GACCGA | 1 cut(s) | 338 |
| TasI | AATT | 1 cut(s) | 285 |
| TscAI | CASTG | 1 cut(s) | 439 |
| TseFI | GTSAC | 2 cut(s) | 16, 187 |
| TseI | GCWGC | 2 cut(s) | 135, 138 |
| Tsp45I | GTSAC | 2 cut(s) | 16, 187 |
| TspDTI | ATGAA | 2 cut(s) | 361, 433 |
| TspRI | CASTG | 1 cut(s) | 439 |
| Tth111I | GACNNNGTC | 1 cut(s) | 434 |
| VpaK11BI | GGWCC | 2 cut(s) | 50, 321 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 477 |
| XmiI | GTMKAC | 2 cut(s) | 438, 466 |