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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 172, 400 |
| AclWI | GGATC | 1 cut(s) | 259 |
| AfaI | GTAC | 1 cut(s) | 431 |
| AgsI | TTSAA | 1 cut(s) | 409 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 138 |
| AluBI | AGCT | 2 cut(s) | 71, 86 |
| AluI | AGCT | 2 cut(s) | 71, 86 |
| AlwI | GGATC | 1 cut(s) | 259 |
| ApeKI | GCWGC | 2 cut(s) | 68, 112 |
| AspS9I | GGNCC | 1 cut(s) | 298 |
| AsuHPI | GGTGA | 3 cut(s) | 142, 293, 385 |
| AvaII | GGWCC | 1 cut(s) | 298 |
| BbvI | GCAGC | 2 cut(s) | 80, 99 |
| BceAI | ACGGC | 1 cut(s) | 399 |
| BclI | TGATCA | 1 cut(s) | 159 |
| BfaI | CTAG | 2 cut(s) | 27, 72 |
| BisI | GCNGC | 3 cut(s) | 69, 113, 173 |
| BlsI | GCNGC | 3 cut(s) | 70, 114, 174 |
| Bme18I | GGWCC | 1 cut(s) | 298 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 138 |
| BmgT120I | GGNCC | 1 cut(s) | 298 |
| BmiI | GGNNCC | 2 cut(s) | 204, 300 |
| Bsa29I | ATCGAT | 1 cut(s) | 329 |
| BsaJI | CCNNGG | 1 cut(s) | 381 |
| Bse1I | ACTGG | 1 cut(s) | 206 |
| BseCI | ATCGAT | 1 cut(s) | 329 |
| BseDI | CCNNGG | 1 cut(s) | 381 |
| BseGI | GGATG | 1 cut(s) | 13 |
| BseNI | ACTGG | 1 cut(s) | 206 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 2 cut(s) | 80, 99 |
| BshVI | ATCGAT | 1 cut(s) | 329 |
| Bsp143I | GATC | 3 cut(s) | 159, 186, 264 |
| BspACI | CCGC | 2 cut(s) | 172, 400 |
| BspDI | ATCGAT | 1 cut(s) | 329 |
| BspLI | GGNNCC | 2 cut(s) | 204, 300 |
| BspPI | GGATC | 1 cut(s) | 259 |
| BsrI | ACTGG | 1 cut(s) | 206 |
| BssECI | CCNNGG | 1 cut(s) | 381 |
| BssMI | GATC | 3 cut(s) | 159, 186, 264 |
| Bst4CI | ACNGT | 1 cut(s) | 181 |
| BstDEI | CTNAG | 2 cut(s) | 48, 250 |
| BstDSI | CCRYGG | 1 cut(s) | 381 |
| BstF5I | GGATG | 1 cut(s) | 13 |
| BstKTI | GATC | 3 cut(s) | 162, 189, 267 |
| BstMBI | GATC | 3 cut(s) | 159, 186, 264 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 118 |
| BstV1I | GCAGC | 2 cut(s) | 80, 99 |
| BstX2I | RGATCY | 1 cut(s) | 264 |
| BstYI | RGATCY | 1 cut(s) | 264 |
| Bsu15I | ATCGAT | 1 cut(s) | 329 |
| BsuTUI | ATCGAT | 1 cut(s) | 329 |
| BtgI | CCRYGG | 1 cut(s) | 381 |
| BtsCI | GGATG | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 1 cut(s) | 298 |
| ClaI | ATCGAT | 1 cut(s) | 329 |
| Csp6I | GTAC | 1 cut(s) | 430 |
| CviJI | RGCY | 6 cut(s) | 71, 86, 112, 175, 218, 386 |
| CviKI_1 | RGCY | 6 cut(s) | 71, 86, 112, 175, 218, 386 |
| CviQI | GTAC | 1 cut(s) | 430 |
| DdeI | CTNAG | 2 cut(s) | 48, 250 |
| DpnI | GATC | 3 cut(s) | 161, 188, 266 |
| DpnII | GATC | 3 cut(s) | 159, 186, 264 |
| DriI | GACNNNNNGTC | 1 cut(s) | 138 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 138 |
| Eco32I | GATATC | 1 cut(s) | 378 |
| Eco47I | GGWCC | 1 cut(s) | 298 |
| EcoRV | GATATC | 1 cut(s) | 378 |
| FaiI | YATR | 5 cut(s) | 95, 144, 258, 322, 437 |
| FauI | CCCGC | 1 cut(s) | 393 |
| FbaI | TGATCA | 1 cut(s) | 159 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 113, 173 |
| FokI | GGATG | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 113, 173 |
| FspBI | CTAG | 2 cut(s) | 27, 72 |
| GluI | GCNGC | 3 cut(s) | 69, 113, 173 |
| HinfI | GANTC | 3 cut(s) | 139, 326, 349 |
| HphI | GGTGA | 3 cut(s) | 142, 293, 385 |
| Hpy166II | GTNNAC | 3 cut(s) | 45, 298, 391 |
| Hpy188I | TCNGA | 1 cut(s) | 164 |
| Hpy188III | TCNNGA | 1 cut(s) | 27 |
| Hpy8I | GTNNAC | 3 cut(s) | 45, 298, 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 181 |
| HpyCH4V | TGCA | 1 cut(s) | 232 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 118 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 250 |
| Ksp22I | TGATCA | 1 cut(s) | 159 |
| Kzo9I | GATC | 3 cut(s) | 159, 186, 264 |
| LpnPI | CCDG | 3 cut(s) | 84, 219, 315 |
| Lsp1109I | GCAGC | 2 cut(s) | 80, 99 |
| MaeI | CTAG | 2 cut(s) | 27, 72 |
| MaeIII | GTNAC | 1 cut(s) | 130 |
| MalI | GATC | 3 cut(s) | 161, 188, 266 |
| MboI | GATC | 3 cut(s) | 159, 186, 264 |
| MboII | GAAGA | 1 cut(s) | 92 |
| MflI | RGATCY | 1 cut(s) | 264 |
| MluCI | AATT | 1 cut(s) | 368 |
| MlyI | GAGTC | 1 cut(s) | 148 |
| MnlI | CCTC | 5 cut(s) | 102, 116, 158, 328, 331 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 118 |
| NdeII | GATC | 3 cut(s) | 159, 186, 264 |
| NlaIV | GGNNCC | 2 cut(s) | 204, 300 |
| NmuCI | GTSAC | 1 cut(s) | 130 |
| PfeI | GAWTC | 2 cut(s) | 326, 349 |
| PkrI | GCNGC | 3 cut(s) | 70, 114, 174 |
| PleI | GAGTC | 1 cut(s) | 147 |
| PpsI | GAGTC | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 2 cut(s) | 204, 300 |
| PspPI | GGNCC | 1 cut(s) | 298 |
| PsuI | RGATCY | 1 cut(s) | 264 |
| RsaI | GTAC | 1 cut(s) | 431 |
| RsaNI | GTAC | 1 cut(s) | 430 |
| SatI | GCNGC | 3 cut(s) | 69, 113, 173 |
| Sau3AI | GATC | 3 cut(s) | 159, 186, 264 |
| Sau96I | GGNCC | 1 cut(s) | 298 |
| SchI | GAGTC | 1 cut(s) | 148 |
| SetI | ASST | 3 cut(s) | 73, 88, 103 |
| SinI | GGWCC | 1 cut(s) | 298 |
| Sse9I | AATT | 1 cut(s) | 368 |
| SsiI | CCGC | 2 cut(s) | 172, 400 |
| SspMI | CTAG | 2 cut(s) | 27, 72 |
| TaaI | ACNGT | 1 cut(s) | 181 |
| TaqI | TCGA | 1 cut(s) | 329 |
| TasI | AATT | 1 cut(s) | 368 |
| TatI | WGTACW | 1 cut(s) | 429 |
| TauI | GCSGC | 1 cut(s) | 175 |
| TfiI | GAWTC | 2 cut(s) | 326, 349 |
| TseFI | GTSAC | 1 cut(s) | 130 |
| TseI | GCWGC | 2 cut(s) | 68, 112 |
| Tsp45I | GTSAC | 1 cut(s) | 130 |
| TspDTI | ATGAA | 3 cut(s) | 17, 93, 321 |
| VpaK11BI | GGWCC | 1 cut(s) | 298 |
| XbaI | TCTAGA | 1 cut(s) | 26 |
| XspI | CTAG | 2 cut(s) | 27, 72 |