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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AciI | CCGC | 2 cut(s) | 529, 1820 |
| AclI | AACGTT | 1 cut(s) | 1473 |
| AclWI | GGATC | 4 cut(s) | 96, 797, 821, 2153 |
| AcoI | YGGCCR | 1 cut(s) | 45 |
| AcsI | RAATTY | 3 cut(s) | 63, 1345, 1415 |
| AcuI | CTGAAG | 2 cut(s) | 114, 230 |
| AfaI | GTAC | 5 cut(s) | 135, 624, 722, 1575, 2095 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1191, 1337, 1819 |
| AflII | CTTAAG | 1 cut(s) | 685 |
| AflIII | ACRYGT | 1 cut(s) | 1910 |
| AjiI | CACGTC | 1 cut(s) | 800 |
| AjnI | CCWGG | 2 cut(s) | 1404, 2018 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1875, 1907 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 889, 921, 2095, 2127 |
| Alw26I | GTCTC | 4 cut(s) | 246, 247, 1385, 2098 |
| AlwI | GGATC | 4 cut(s) | 96, 797, 821, 2153 |
| AoxI | GGCC | 4 cut(s) | 45, 846, 1664, 1833 |
| ApeKI | GCWGC | 7 cut(s) | 140, 989, 1238, 1709, 1965, 1968, 2008 |
| ApoI | RAATTY | 3 cut(s) | 63, 1345, 1415 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 459, 491 |
| AseI | ATTAAT | 1 cut(s) | 597 |
| AspS9I | GGNCC | 1 cut(s) | 1833 |
| AsuHPI | GGTGA | 2 cut(s) | 1424, 1936 |
| BalI | TGGCCA | 1 cut(s) | 47 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BauI | CACGAG | 1 cut(s) | 1382 |
| BbsI | GAAGAC | 2 cut(s) | 1130, 1865 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BbvI | GCAGC | 7 cut(s) | 127, 976, 1225, 1721, 1955, 1977, 2020 |
| BccI | CCATC | 1 cut(s) | 1331 |
| BciT130I | CCWGG | 2 cut(s) | 1406, 2020 |
| BciVI | GTATCC | 1 cut(s) | 705 |
| BcoDI | GTCTC | 4 cut(s) | 246, 247, 1385, 2098 |
| BfaI | CTAG | 6 cut(s) | 87, 650, 1088, 1583, 2109, 2155 |
| BfrI | CTTAAG | 1 cut(s) | 685 |
| BfuI | GTATCC | 1 cut(s) | 705 |
| BisI | GCNGC | 7 cut(s) | 141, 990, 1239, 1710, 1966, 1969, 2009 |
| BlsI | GCNGC | 7 cut(s) | 142, 991, 1240, 1711, 1967, 1970, 2010 |
| Bme1390I | CCNGG | 2 cut(s) | 1406, 2020 |
| BmgBI | CACGTC | 1 cut(s) | 800 |
| BmgT120I | GGNCC | 1 cut(s) | 1833 |
| BmiI | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| BmrFI | CCNGG | 2 cut(s) | 1406, 2020 |
| BmrI | ACTGGG | 1 cut(s) | 619 |
| BmsI | GCATC | 5 cut(s) | 152, 1630, 1793, 1980, 1986 |
| BmuI | ACTGGG | 1 cut(s) | 619 |
| BpiI | GAAGAC | 2 cut(s) | 1130, 1865 |
| Bpu10I | CCTNAGC | 2 cut(s) | 882, 942 |
| BpuEI | CTTGAG | 1 cut(s) | 15 |
| Bsa29I | ATCGAT | 2 cut(s) | 1568, 2030 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1758 |
| BsaI | GGTCTC | 2 cut(s) | 1385, 2098 |
| BsaJI | CCNNGG | 1 cut(s) | 1531 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1103, 1133, 1789, 1819, 2095, 2125 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1191, 1337, 1819 |
| Bse1I | ACTGG | 2 cut(s) | 614, 955 |
| Bse3DI | GCAATG | 2 cut(s) | 48, 1787 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1758 |
| BseBI | CCWGG | 2 cut(s) | 1406, 2020 |
| BseCI | ATCGAT | 2 cut(s) | 1568, 2030 |
| BseDI | CCNNGG | 1 cut(s) | 1531 |
| BseGI | GGATG | 4 cut(s) | 282, 400, 763, 1594 |
| BseJI | GATNNNNATC | 1 cut(s) | 1758 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1191, 1337, 1819 |
| BseMI | GCAATG | 2 cut(s) | 48, 1787 |
| BseMII | CTCAG | 5 cut(s) | 62, 498, 873, 933, 2036 |
| BseNI | ACTGG | 2 cut(s) | 614, 955 |
| BseRI | GAGGAG | 3 cut(s) | 854, 1127, 1322 |
| BseXI | GCAGC | 7 cut(s) | 127, 976, 1225, 1721, 1955, 1977, 2020 |
| BsgI | GTGCAG | 1 cut(s) | 1191 |
| BshFI | GGCC | 4 cut(s) | 47, 848, 1666, 1835 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BshVI | ATCGAT | 2 cut(s) | 1568, 2030 |
| BslFI | GGGAC | 2 cut(s) | 91, 1663 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1191, 1337, 1819 |
| BsmAI | GTCTC | 4 cut(s) | 246, 247, 1385, 2098 |
| BsmBI | CGTCTC | 1 cut(s) | 247 |
| BsmFI | GGGAC | 2 cut(s) | 91, 1663 |
| BsmI | GAATGC | 1 cut(s) | 1357 |
| BsnI | GGCC | 4 cut(s) | 47, 848, 1666, 1835 |
| Bso31I | GGTCTC | 2 cut(s) | 1385, 2098 |
| Bsp1407I | TGTACA | 1 cut(s) | 622 |
| Bsp143I | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| Bsp19I | CCATGG | 1 cut(s) | 1531 |
| BspACI | CCGC | 2 cut(s) | 529, 1820 |
| BspANI | GGCC | 4 cut(s) | 47, 848, 1666, 1835 |
| BspCNI | CTCAG | 5 cut(s) | 63, 497, 874, 934, 2037 |
| BspDI | ATCGAT | 2 cut(s) | 1568, 2030 |
| BspHI | TCATGA | 1 cut(s) | 1762 |
| BspLI | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| BspPI | GGATC | 4 cut(s) | 96, 797, 821, 2153 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTI | CTTAAG | 1 cut(s) | 685 |
| BspTNI | GGTCTC | 2 cut(s) | 1385, 2098 |
| BsrDI | GCAATG | 2 cut(s) | 48, 1787 |
| BsrGI | TGTACA | 1 cut(s) | 622 |
| BsrI | ACTGG | 2 cut(s) | 614, 955 |
| BssECI | CCNNGG | 1 cut(s) | 1531 |
| BssMI | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| BssSI | CACGAG | 1 cut(s) | 1382 |
| BssT1I | CCWWGG | 1 cut(s) | 1531 |
| Bst2BI | CACGAG | 1 cut(s) | 1382 |
| Bst2UI | CCWGG | 2 cut(s) | 1406, 2020 |
| Bst4CI | ACNGT | 4 cut(s) | 744, 1273, 1492, 1633 |
| BstAFI | CTTAAG | 1 cut(s) | 685 |
| BstAUI | TGTACA | 1 cut(s) | 622 |
| BstC8I | GCNNGC | 2 cut(s) | 358, 987 |
| BstDEI | CTNAG | 6 cut(s) | 71, 484, 882, 942, 1040, 2045 |
| BstDSI | CCRYGG | 1 cut(s) | 1531 |
| BstF5I | GGATG | 4 cut(s) | 282, 400, 763, 1594 |
| BstKTI | GATC | 6 cut(s) | 104, 775, 792, 829, 1396, 2148 |
| BstMAI | GTCTC | 4 cut(s) | 246, 247, 1385, 2098 |
| BstMBI | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1244, 1974 |
| BstNI | CCWGG | 2 cut(s) | 1406, 2020 |
| BstNSI | RCATGY | 2 cut(s) | 1561, 1914 |
| BstSCI | CCNGG | 2 cut(s) | 1404, 2018 |
| BstV1I | GCAGC | 7 cut(s) | 127, 976, 1225, 1721, 1955, 1977, 2020 |
| BstV2I | GAAGAC | 2 cut(s) | 1130, 1865 |
| BstX2I | RGATCY | 1 cut(s) | 826 |
| BstYI | RGATCY | 1 cut(s) | 826 |
| Bsu15I | ATCGAT | 2 cut(s) | 1568, 2030 |
| BsuI | GTATCC | 1 cut(s) | 705 |
| BsuRI | GGCC | 4 cut(s) | 47, 848, 1666, 1835 |
| BsuTUI | ATCGAT | 2 cut(s) | 1568, 2030 |
| BtgI | CCRYGG | 1 cut(s) | 1531 |
| BtrI | CACGTC | 1 cut(s) | 800 |
| BtsCI | GGATG | 4 cut(s) | 282, 400, 763, 1594 |
| BtsIMutI | CAGTG | 1 cut(s) | 1269 |
| Cac8I | GCNNGC | 2 cut(s) | 358, 987 |
| CciI | TCATGA | 1 cut(s) | 1762 |
| Cfr13I | GGNCC | 1 cut(s) | 1833 |
| ClaI | ATCGAT | 2 cut(s) | 1568, 2030 |
| CseI | GACGC | 1 cut(s) | 443 |
| Csp6I | GTAC | 5 cut(s) | 134, 623, 721, 1574, 2094 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2042, 2077, 2103, 2138 |
| CviQI | GTAC | 5 cut(s) | 134, 623, 721, 1574, 2094 |
| DdeI | CTNAG | 6 cut(s) | 71, 484, 882, 942, 1040, 2045 |
| DpnI | GATC | 6 cut(s) | 103, 774, 791, 828, 1395, 2147 |
| DpnII | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| DraI | TTTAAA | 1 cut(s) | 823 |
| EaeI | YGGCCR | 1 cut(s) | 45 |
| Eco130I | CCWWGG | 1 cut(s) | 1531 |
| Eco31I | GGTCTC | 2 cut(s) | 1385, 2098 |
| Eco32I | GATATC | 1 cut(s) | 2028 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 230 |
| EcoRII | CCWGG | 2 cut(s) | 1404, 2018 |
| EcoRV | GATATC | 1 cut(s) | 2028 |
| EcoT14I | CCWWGG | 1 cut(s) | 1531 |
| EcoT22I | ATGCAT | 2 cut(s) | 1230, 1829 |
| ErhI | CCWWGG | 1 cut(s) | 1531 |
| Esp3I | CGTCTC | 1 cut(s) | 247 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 112, 144, 753, 785, 1584, 1616 |
| FaqI | GGGAC | 2 cut(s) | 91, 1663 |
| FauI | CCCGC | 1 cut(s) | 536 |
| FauNDI | CATATG | 1 cut(s) | 1829 |
| Fnu4HI | GCNGC | 7 cut(s) | 141, 990, 1239, 1710, 1966, 1969, 2009 |
| FokI | GGATG | 4 cut(s) | 289, 407, 770, 1601 |
| Fsp4HI | GCNGC | 7 cut(s) | 141, 990, 1239, 1710, 1966, 1969, 2009 |
| FspBI | CTAG | 6 cut(s) | 87, 650, 1088, 1583, 2109, 2155 |
| GluI | GCNGC | 7 cut(s) | 141, 990, 1239, 1710, 1966, 1969, 2009 |
| HaeIII | GGCC | 4 cut(s) | 47, 848, 1666, 1835 |
| HgaI | GACGC | 1 cut(s) | 443 |
| HincII | GTYRAC | 1 cut(s) | 921 |
| HindII | GTYRAC | 1 cut(s) | 921 |
| HindIII | AAGCTT | 1 cut(s) | 1598 |
| HinfI | GANTC | 9 cut(s) | 514, 569, 641, 1036, 1150, 1166, 1178, 1261, 1327 |
| HpaI | GTTAAC | 1 cut(s) | 921 |
| HphI | GGTGA | 2 cut(s) | 1424, 1936 |
| Hpy166II | GTNNAC | 1 cut(s) | 921 |
| Hpy188I | TCNGA | 5 cut(s) | 640, 910, 1056, 1701, 2041 |
| Hpy8I | GTNNAC | 1 cut(s) | 921 |
| HpyCH4III | ACNGT | 4 cut(s) | 744, 1273, 1492, 1633 |
| HpyCH4IV | ACGT | 3 cut(s) | 799, 1127, 1473 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1244, 1974 |
| HpyF3I | CTNAG | 6 cut(s) | 71, 484, 882, 942, 1040, 2045 |
| HpySE526I | ACGT | 3 cut(s) | 799, 1127, 1473 |
| KspAI | GTTAAC | 1 cut(s) | 921 |
| Kzo9I | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| LmnI | GCTCC | 3 cut(s) | 110, 491, 1309 |
| Lsp1109I | GCAGC | 7 cut(s) | 127, 976, 1225, 1721, 1955, 1977, 2020 |
| LweI | GCATC | 5 cut(s) | 152, 1630, 1793, 1980, 1986 |
| MaeI | CTAG | 6 cut(s) | 87, 650, 1088, 1583, 2109, 2155 |
| MaeII | ACGT | 3 cut(s) | 799, 1127, 1473 |
| MaeIII | GTNAC | 3 cut(s) | 232, 1159, 1942 |
| MalI | GATC | 6 cut(s) | 103, 774, 791, 828, 1395, 2147 |
| MboI | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| MfeI | CAATTG | 3 cut(s) | 1248, 1374, 1431 |
| MflI | RGATCY | 1 cut(s) | 826 |
| MlsI | TGGCCA | 1 cut(s) | 47 |
| MluNI | TGGCCA | 1 cut(s) | 47 |
| MlyI | GAGTC | 3 cut(s) | 523, 635, 1045 |
| MmeI | TCCRAC | 1 cut(s) | 2118 |
| Mox20I | TGGCCA | 1 cut(s) | 47 |
| Mph1103I | ATGCAT | 2 cut(s) | 1230, 1829 |
| MscI | TGGCCA | 1 cut(s) | 47 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1982 |
| Msp20I | TGGCCA | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 2 cut(s) | 70, 1968 |
| MspCI | CTTAAG | 1 cut(s) | 685 |
| MspR9I | CCNGG | 2 cut(s) | 1406, 2020 |
| MunI | CAATTG | 3 cut(s) | 1248, 1374, 1431 |
| Mva1269I | GAATGC | 1 cut(s) | 1357 |
| MvaI | CCWGG | 2 cut(s) | 1406, 2020 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1244, 1974 |
| NcoI | CCATGG | 1 cut(s) | 1531 |
| NdeI | CATATG | 1 cut(s) | 1829 |
| NdeII | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| NmuCI | GTSAC | 2 cut(s) | 232, 1942 |
| NsiI | ATGCAT | 2 cut(s) | 1230, 1829 |
| NspI | RCATGY | 2 cut(s) | 1561, 1914 |
| PagI | TCATGA | 1 cut(s) | 1762 |
| PciI | ACATGT | 1 cut(s) | 1910 |
| PctI | GAATGC | 1 cut(s) | 1357 |
| PfeI | GAWTC | 6 cut(s) | 569, 1150, 1166, 1178, 1261, 1327 |
| PflFI | GACNNNGTC | 2 cut(s) | 82, 238 |
| PfoI | TCCNGGA | 2 cut(s) | 1404, 2018 |
| PkrI | GCNGC | 7 cut(s) | 142, 991, 1240, 1711, 1967, 1970, 2010 |
| PleI | GAGTC | 3 cut(s) | 522, 635, 1044 |
| PpsI | GAGTC | 3 cut(s) | 522, 635, 1044 |
| PscI | ACATGT | 1 cut(s) | 1910 |
| PshBI | ATTAAT | 1 cut(s) | 597 |
| Psp1406I | AACGTT | 1 cut(s) | 1473 |
| Psp6I | CCWGG | 2 cut(s) | 1404, 2018 |
| PspGI | CCWGG | 2 cut(s) | 1404, 2018 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| PspPI | GGNCC | 1 cut(s) | 1833 |
| PsuI | RGATCY | 1 cut(s) | 826 |
| PsyI | GACNNNGTC | 2 cut(s) | 82, 238 |
| PvuII | CAGCTG | 2 cut(s) | 70, 1968 |
| RsaI | GTAC | 5 cut(s) | 135, 624, 722, 1575, 2095 |
| RsaNI | GTAC | 5 cut(s) | 134, 623, 721, 1574, 2094 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1982 |
| SatI | GCNGC | 7 cut(s) | 141, 990, 1239, 1710, 1966, 1969, 2009 |
| Sau3AI | GATC | 6 cut(s) | 101, 772, 789, 826, 1393, 2145 |
| Sau96I | GGNCC | 1 cut(s) | 1833 |
| SchI | GAGTC | 3 cut(s) | 523, 635, 1045 |
| ScrFI | CCNGG | 2 cut(s) | 1406, 2020 |
| SfaNI | GCATC | 5 cut(s) | 152, 1630, 1793, 1980, 1986 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1982 |
| SmlI | CTYRAG | 2 cut(s) | 30, 685 |
| SmoI | CTYRAG | 2 cut(s) | 30, 685 |
| SsiI | CCGC | 2 cut(s) | 529, 1820 |
| SspMI | CTAG | 6 cut(s) | 87, 650, 1088, 1583, 2109, 2155 |
| StyD4I | CCNGG | 2 cut(s) | 1404, 2018 |
| StyI | CCWWGG | 1 cut(s) | 1531 |
| TaaI | ACNGT | 4 cut(s) | 744, 1273, 1492, 1633 |
| TaiI | ACGT | 3 cut(s) | 802, 1130, 1476 |
| TaqI | TCGA | 5 cut(s) | 567, 574, 1568, 1614, 2030 |
| TatI | WGTACW | 2 cut(s) | 133, 622 |
| TfiI | GAWTC | 6 cut(s) | 569, 1150, 1166, 1178, 1261, 1327 |
| TscAI | CASTG | 1 cut(s) | 1276 |
| TseFI | GTSAC | 2 cut(s) | 232, 1942 |
| TseI | GCWGC | 7 cut(s) | 140, 989, 1238, 1709, 1965, 1968, 2008 |
| Tsp45I | GTSAC | 2 cut(s) | 232, 1942 |
| TspRI | CASTG | 1 cut(s) | 1276 |
| Tth111I | GACNNNGTC | 2 cut(s) | 82, 238 |
| Vha464I | CTTAAG | 1 cut(s) | 685 |
| VspI | ATTAAT | 1 cut(s) | 597 |
| XapI | RAATTY | 3 cut(s) | 63, 1345, 1415 |
| XbaI | TCTAGA | 1 cut(s) | 649 |
| XceI | RCATGY | 2 cut(s) | 1561, 1914 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1529 |
| XspI | CTAG | 6 cut(s) | 87, 650, 1088, 1583, 2109, 2155 |
| Zsp2I | ATGCAT | 2 cut(s) | 1230, 1829 |