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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 452 |
| AccB1I | GGYRCC | 2 cut(s) | 367, 635 |
| AccI | GTMKAC | 1 cut(s) | 783 |
| AciI | CCGC | 2 cut(s) | 270, 914 |
| AclWI | GGATC | 2 cut(s) | 788, 801 |
| AcoI | YGGCCR | 1 cut(s) | 706 |
| AcuI | CTGAAG | 1 cut(s) | 609 |
| AfaI | GTAC | 1 cut(s) | 156 |
| AfeI | AGCGCT | 1 cut(s) | 665 |
| AgsI | TTSAA | 4 cut(s) | 39, 45, 583, 802 |
| AjnI | CCWGG | 1 cut(s) | 242 |
| AluBI | AGCT | 5 cut(s) | 31, 62, 106, 176, 1037 |
| AluI | AGCT | 5 cut(s) | 31, 62, 106, 176, 1037 |
| Alw26I | GTCTC | 1 cut(s) | 802 |
| AlwI | GGATC | 2 cut(s) | 788, 801 |
| Aor51HI | AGCGCT | 1 cut(s) | 665 |
| AoxI | GGCC | 3 cut(s) | 245, 408, 706 |
| ApeKI | GCWGC | 3 cut(s) | 287, 1034, 1048 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 765, 797 |
| AseI | ATTAAT | 2 cut(s) | 48, 507 |
| AspLEI | GCGC | 1 cut(s) | 666 |
| AspS9I | GGNCC | 1 cut(s) | 408 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BamHI | GGATCC | 1 cut(s) | 793 |
| BanI | GGYRCC | 2 cut(s) | 367, 635 |
| BauI | CACGAG | 1 cut(s) | 669 |
| BbsI | GAAGAC | 2 cut(s) | 440, 780 |
| BbvI | GCAGC | 3 cut(s) | 299, 1046, 1060 |
| BccI | CCATC | 2 cut(s) | 277, 598 |
| BceAI | ACGGC | 1 cut(s) | 862 |
| BciT130I | CCWGG | 1 cut(s) | 244 |
| BcoDI | GTCTC | 1 cut(s) | 802 |
| BfaI | CTAG | 2 cut(s) | 164, 350 |
| BfoI | RGCGCY | 1 cut(s) | 667 |
| BfuAI | ACCTGC | 1 cut(s) | 452 |
| BglII | AGATCT | 1 cut(s) | 346 |
| BisI | GCNGC | 3 cut(s) | 288, 1035, 1049 |
| BlsI | GCNGC | 3 cut(s) | 289, 1036, 1050 |
| Bme1390I | CCNGG | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 1 cut(s) | 408 |
| BmiI | GGNNCC | 3 cut(s) | 369, 637, 795 |
| BmrFI | CCNGG | 1 cut(s) | 244 |
| BmsI | GCATC | 8 cut(s) | 211, 368, 392, 485, 552, 561, 738, 858 |
| BpiI | GAAGAC | 2 cut(s) | 440, 780 |
| BpuEI | CTTGAG | 1 cut(s) | 852 |
| BsaJI | CCNNGG | 1 cut(s) | 112 |
| Bse1I | ACTGG | 1 cut(s) | 749 |
| Bse3DI | GCAATG | 1 cut(s) | 935 |
| BseBI | CCWGG | 1 cut(s) | 244 |
| BseDI | CCNNGG | 1 cut(s) | 112 |
| BseGI | GGATG | 4 cut(s) | 175, 383, 693, 753 |
| BseMI | GCAATG | 1 cut(s) | 935 |
| BseMII | CTCAG | 2 cut(s) | 81, 1058 |
| BseNI | ACTGG | 1 cut(s) | 749 |
| BseRI | GAGGAG | 1 cut(s) | 820 |
| BseXI | GCAGC | 3 cut(s) | 299, 1046, 1060 |
| BsgI | GTGCAG | 1 cut(s) | 430 |
| BshFI | GGCC | 3 cut(s) | 247, 410, 708 |
| BshNI | GGYRCC | 2 cut(s) | 367, 635 |
| BslFI | GGGAC | 2 cut(s) | 31, 244 |
| BsmAI | GTCTC | 1 cut(s) | 802 |
| BsmFI | GGGAC | 2 cut(s) | 31, 244 |
| BsnI | GGCC | 3 cut(s) | 247, 410, 708 |
| Bsp143I | GATC | 2 cut(s) | 346, 793 |
| Bsp19I | CCATGG | 1 cut(s) | 112 |
| BspACI | CCGC | 2 cut(s) | 270, 914 |
| BspANI | GGCC | 3 cut(s) | 247, 410, 708 |
| BspCNI | CTCAG | 2 cut(s) | 82, 1057 |
| BspLI | GGNNCC | 3 cut(s) | 369, 637, 795 |
| BspMI | ACCTGC | 1 cut(s) | 452 |
| BspPI | GGATC | 2 cut(s) | 788, 801 |
| BspT107I | GGYRCC | 2 cut(s) | 367, 635 |
| BsrDI | GCAATG | 1 cut(s) | 935 |
| BsrI | ACTGG | 1 cut(s) | 749 |
| BssECI | CCNNGG | 1 cut(s) | 112 |
| BssMI | GATC | 2 cut(s) | 346, 793 |
| BssSI | CACGAG | 1 cut(s) | 669 |
| BssT1I | CCWWGG | 1 cut(s) | 112 |
| Bst2BI | CACGAG | 1 cut(s) | 669 |
| Bst2UI | CCWGG | 1 cut(s) | 244 |
| Bst4CI | ACNGT | 2 cut(s) | 781, 947 |
| Bst6I | CTCTTC | 3 cut(s) | 305, 797, 1018 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 549 |
| BstC8I | GCNNGC | 2 cut(s) | 29, 33 |
| BstDEI | CTNAG | 2 cut(s) | 90, 1044 |
| BstDSI | CCRYGG | 1 cut(s) | 112 |
| BstF5I | GGATG | 4 cut(s) | 175, 383, 693, 753 |
| BstH2I | RGCGCY | 1 cut(s) | 667 |
| BstHHI | GCGC | 1 cut(s) | 666 |
| BstKTI | GATC | 2 cut(s) | 349, 796 |
| BstMAI | GTCTC | 1 cut(s) | 802 |
| BstMBI | GATC | 2 cut(s) | 346, 793 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 365, 416, 549 |
| BstNI | CCWGG | 1 cut(s) | 244 |
| BstNSI | RCATGY | 1 cut(s) | 476 |
| BstSCI | CCNGG | 1 cut(s) | 242 |
| BstV1I | GCAGC | 3 cut(s) | 299, 1046, 1060 |
| BstV2I | GAAGAC | 2 cut(s) | 440, 780 |
| BstX2I | RGATCY | 2 cut(s) | 346, 793 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 930 |
| BstYI | RGATCY | 2 cut(s) | 346, 793 |
| BsuRI | GGCC | 3 cut(s) | 247, 410, 708 |
| BtgI | CCRYGG | 1 cut(s) | 112 |
| BtsCI | GGATG | 4 cut(s) | 175, 383, 693, 753 |
| BtsIMutI | CAGTG | 3 cut(s) | 419, 742, 777 |
| BveI | ACCTGC | 1 cut(s) | 452 |
| Cac8I | GCNNGC | 2 cut(s) | 29, 33 |
| CfoI | GCGC | 1 cut(s) | 666 |
| Cfr13I | GGNCC | 1 cut(s) | 408 |
| Csp6I | GTAC | 1 cut(s) | 155 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 928, 963 |
| CviAII | CATG | 6 cut(s) | 113, 332, 355, 473, 523, 790 |
| CviQI | GTAC | 1 cut(s) | 155 |
| DdeI | CTNAG | 2 cut(s) | 90, 1044 |
| DpnI | GATC | 2 cut(s) | 348, 795 |
| DpnII | GATC | 2 cut(s) | 346, 793 |
| EaeI | YGGCCR | 1 cut(s) | 706 |
| Eam1104I | CTCTTC | 3 cut(s) | 305, 797, 1018 |
| EarI | CTCTTC | 3 cut(s) | 305, 797, 1018 |
| Eco130I | CCWWGG | 1 cut(s) | 112 |
| Eco47III | AGCGCT | 1 cut(s) | 665 |
| Eco57I | CTGAAG | 1 cut(s) | 609 |
| EcoRII | CCWGG | 1 cut(s) | 242 |
| EcoT14I | CCWWGG | 1 cut(s) | 112 |
| EcoT22I | ATGCAT | 3 cut(s) | 404, 478, 554 |
| ErhI | CCWWGG | 1 cut(s) | 112 |
| FaeI | CATG | 6 cut(s) | 116, 335, 358, 476, 526, 793 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FaqI | GGGAC | 2 cut(s) | 31, 244 |
| FatI | CATG | 6 cut(s) | 112, 331, 354, 472, 522, 789 |
| FauI | CCCGC | 2 cut(s) | 277, 907 |
| FauNDI | CATATG | 2 cut(s) | 404, 548 |
| FblI | GTMKAC | 1 cut(s) | 783 |
| Fnu4HI | GCNGC | 3 cut(s) | 288, 1035, 1049 |
| FokI | GGATG | 4 cut(s) | 182, 370, 700, 760 |
| Fsp4HI | GCNGC | 3 cut(s) | 288, 1035, 1049 |
| FspBI | CTAG | 2 cut(s) | 164, 350 |
| GlaI | GCGC | 1 cut(s) | 665 |
| GluI | GCNGC | 3 cut(s) | 288, 1035, 1049 |
| HaeII | RGCGCY | 1 cut(s) | 667 |
| HaeIII | GGCC | 3 cut(s) | 247, 410, 708 |
| HhaI | GCGC | 1 cut(s) | 666 |
| Hin1II | CATG | 6 cut(s) | 116, 335, 358, 476, 526, 793 |
| Hin6I | GCGC | 1 cut(s) | 664 |
| HinP1I | GCGC | 1 cut(s) | 664 |
| HindIII | AAGCTT | 1 cut(s) | 174 |
| HinfI | GANTC | 2 cut(s) | 376, 810 |
| Hpy166II | GTNNAC | 2 cut(s) | 784, 841 |
| Hpy188I | TCNGA | 3 cut(s) | 470, 628, 1067 |
| Hpy188III | TCNNGA | 5 cut(s) | 218, 229, 307, 350, 923 |
| Hpy8I | GTNNAC | 2 cut(s) | 784, 841 |
| HpyAV | CCTTC | 2 cut(s) | 520, 967 |
| HpyCH4III | ACNGT | 2 cut(s) | 781, 947 |
| HpyCH4IV | ACGT | 1 cut(s) | 138 |
| HpyCH4V | TGCA | 7 cut(s) | 68, 383, 402, 447, 476, 552, 674 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 365, 416, 549 |
| HpyF3I | CTNAG | 2 cut(s) | 90, 1044 |
| HpySE526I | ACGT | 1 cut(s) | 138 |
| Hsp92II | CATG | 6 cut(s) | 116, 335, 358, 476, 526, 793 |
| HspAI | GCGC | 1 cut(s) | 664 |
| Kzo9I | GATC | 2 cut(s) | 346, 793 |
| LmnI | GCTCC | 1 cut(s) | 540 |
| Lsp1109I | GCAGC | 3 cut(s) | 299, 1046, 1060 |
| LweI | GCATC | 8 cut(s) | 211, 368, 392, 485, 552, 561, 738, 858 |
| MaeI | CTAG | 2 cut(s) | 164, 350 |
| MaeII | ACGT | 1 cut(s) | 138 |
| MaeIII | GTNAC | 3 cut(s) | 517, 563, 740 |
| MalI | GATC | 2 cut(s) | 348, 795 |
| MboI | GATC | 2 cut(s) | 346, 793 |
| MboII | GAAGA | 8 cut(s) | 322, 338, 356, 445, 785, 814, 841, 1035 |
| MfeI | CAATTG | 3 cut(s) | 12, 150, 657 |
| MflI | RGATCY | 2 cut(s) | 346, 793 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluCI | AATT | 7 cut(s) | 12, 45, 150, 261, 438, 657, 907 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| MlyI | GAGTC | 1 cut(s) | 804 |
| MmeI | TCCRAC | 1 cut(s) | 579 |
| MnlI | CCTC | 7 cut(s) | 87, 124, 334, 798, 979, 1019, 1054 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| Mph1103I | ATGCAT | 3 cut(s) | 404, 478, 554 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 4 cut(s) | 48, 390, 507, 1092 |
| MslI | CAYNNNNRTG | 3 cut(s) | 336, 557, 1056 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspA1I | CMGCKG | 1 cut(s) | 31 |
| MspR9I | CCNGG | 1 cut(s) | 244 |
| MunI | CAATTG | 3 cut(s) | 12, 150, 657 |
| MvaI | CCWGG | 1 cut(s) | 244 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 365, 416, 549 |
| NcoI | CCATGG | 1 cut(s) | 112 |
| NdeI | CATATG | 2 cut(s) | 404, 548 |
| NdeII | GATC | 2 cut(s) | 346, 793 |
| NlaIII | CATG | 6 cut(s) | 116, 335, 358, 476, 526, 793 |
| NlaIV | GGNNCC | 3 cut(s) | 369, 637, 795 |
| NmuCI | GTSAC | 1 cut(s) | 740 |
| NsiI | ATGCAT | 3 cut(s) | 404, 478, 554 |
| NspI | RCATGY | 1 cut(s) | 476 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1076 |
| PfeI | GAWTC | 1 cut(s) | 376 |
| PflFI | GACNNNGTC | 1 cut(s) | 779 |
| PkrI | GCNGC | 3 cut(s) | 289, 1036, 1050 |
| PleI | GAGTC | 1 cut(s) | 804 |
| PpsI | GAGTC | 1 cut(s) | 804 |
| PshBI | ATTAAT | 2 cut(s) | 48, 507 |
| Psp6I | CCWGG | 1 cut(s) | 242 |
| PspGI | CCWGG | 1 cut(s) | 242 |
| PspN4I | GGNNCC | 3 cut(s) | 369, 637, 795 |
| PspPI | GGNCC | 1 cut(s) | 408 |
| PsuI | RGATCY | 2 cut(s) | 346, 793 |
| PsyI | GACNNNGTC | 1 cut(s) | 779 |
| PvuII | CAGCTG | 1 cut(s) | 31 |
| RsaI | GTAC | 1 cut(s) | 156 |
| RsaNI | GTAC | 1 cut(s) | 155 |
| RseI | CAYNNNNRTG | 3 cut(s) | 336, 557, 1056 |
| SaqAI | TTAA | 4 cut(s) | 48, 390, 507, 1092 |
| SatI | GCNGC | 3 cut(s) | 288, 1035, 1049 |
| Sau3AI | GATC | 2 cut(s) | 346, 793 |
| Sau96I | GGNCC | 1 cut(s) | 408 |
| SchI | GAGTC | 1 cut(s) | 804 |
| ScrFI | CCNGG | 1 cut(s) | 244 |
| SetI | ASST | 9 cut(s) | 33, 64, 108, 141, 178, 446, 570, 1039, 1065 |
| SfaNI | GCATC | 8 cut(s) | 211, 368, 392, 485, 552, 561, 738, 858 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 336, 557, 1056 |
| SmlI | CTYRAG | 1 cut(s) | 867 |
| SmoI | CTYRAG | 1 cut(s) | 867 |
| Sse9I | AATT | 7 cut(s) | 12, 45, 150, 261, 438, 657, 907 |
| SsiI | CCGC | 2 cut(s) | 270, 914 |
| SspI | AATATT | 1 cut(s) | 55 |
| SspMI | CTAG | 2 cut(s) | 164, 350 |
| StyD4I | CCNGG | 1 cut(s) | 242 |
| StyI | CCWWGG | 1 cut(s) | 112 |
| TaaI | ACNGT | 2 cut(s) | 781, 947 |
| TaiI | ACGT | 1 cut(s) | 141 |
| TasI | AATT | 7 cut(s) | 12, 45, 150, 261, 438, 657, 907 |
| TfiI | GAWTC | 1 cut(s) | 376 |
| Tru1I | TTAA | 4 cut(s) | 48, 390, 507, 1092 |
| Tru9I | TTAA | 4 cut(s) | 48, 390, 507, 1092 |
| TscAI | CASTG | 3 cut(s) | 426, 749, 784 |
| TseFI | GTSAC | 1 cut(s) | 740 |
| TseI | GCWGC | 3 cut(s) | 287, 1034, 1048 |
| Tsp45I | GTSAC | 1 cut(s) | 740 |
| TspDTI | ATGAA | 9 cut(s) | 186, 216, 471, 539, 632, 704, 778, 946, 986 |
| TspGWI | ACGGA | 2 cut(s) | 111, 1085 |
| TspRI | CASTG | 3 cut(s) | 426, 749, 784 |
| Tth111I | GACNNNGTC | 1 cut(s) | 779 |
| VspI | ATTAAT | 2 cut(s) | 48, 507 |
| XbaI | TCTAGA | 1 cut(s) | 349 |
| XceI | RCATGY | 1 cut(s) | 476 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 110 |
| XmiI | GTMKAC | 1 cut(s) | 783 |
| XspI | CTAG | 2 cut(s) | 164, 350 |
| Zsp2I | ATGCAT | 3 cut(s) | 404, 478, 554 |