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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 67 |
| AccII | CGCG | 1 cut(s) | 130 |
| AciI | CCGC | 3 cut(s) | 128, 168, 188 |
| AclWI | GGATC | 1 cut(s) | 485 |
| AcoI | YGGCCR | 1 cut(s) | 444 |
| AcsI | RAATTY | 2 cut(s) | 202, 229 |
| AcuI | CTGAAG | 2 cut(s) | 99, 523 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 73, 117, 197 |
| AflII | CTTAAG | 2 cut(s) | 317, 434 |
| AgsI | TTSAA | 1 cut(s) | 469 |
| AjnI | CCWGG | 1 cut(s) | 170 |
| AluBI | AGCT | 2 cut(s) | 409, 588 |
| AluI | AGCT | 2 cut(s) | 409, 588 |
| Alw26I | GTCTC | 1 cut(s) | 28 |
| AlwI | GGATC | 1 cut(s) | 485 |
| AoxI | GGCC | 1 cut(s) | 444 |
| ApeKI | GCWGC | 2 cut(s) | 331, 588 |
| ApoI | RAATTY | 2 cut(s) | 202, 229 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 218, 248, 250, 280 |
| AspA2I | CCTAGG | 1 cut(s) | 116 |
| AsuHPI | GGTGA | 2 cut(s) | 24, 472 |
| AvrII | CCTAGG | 1 cut(s) | 116 |
| AxyI | CCTNAGG | 1 cut(s) | 496 |
| BalI | TGGCCA | 1 cut(s) | 446 |
| BbvI | GCAGC | 2 cut(s) | 343, 575 |
| BccI | CCATC | 3 cut(s) | 467, 491, 542 |
| BciT130I | CCWGG | 1 cut(s) | 172 |
| BclI | TGATCA | 1 cut(s) | 388 |
| BcoDI | GTCTC | 1 cut(s) | 28 |
| BfaI | CTAG | 1 cut(s) | 117 |
| BfrI | CTTAAG | 2 cut(s) | 317, 434 |
| BfuAI | ACCTGC | 1 cut(s) | 67 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 104, 452 |
| BisI | GCNGC | 2 cut(s) | 332, 589 |
| BlnI | CCTAGG | 1 cut(s) | 116 |
| BlsI | GCNGC | 2 cut(s) | 333, 590 |
| Bme1390I | CCNGG | 1 cut(s) | 172 |
| BmrFI | CCNGG | 1 cut(s) | 172 |
| BmsI | GCATC | 2 cut(s) | 151, 318 |
| BsaBI | GATNNNNATC | 2 cut(s) | 387, 482 |
| BsaJI | CCNNGG | 2 cut(s) | 116, 270 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 73, 117, 197 |
| Bse1I | ACTGG | 2 cut(s) | 240, 304 |
| Bse21I | CCTNAGG | 1 cut(s) | 496 |
| Bse8I | GATNNNNATC | 2 cut(s) | 387, 482 |
| BseBI | CCWGG | 1 cut(s) | 172 |
| BseDI | CCNNGG | 2 cut(s) | 116, 270 |
| BseGI | GGATG | 5 cut(s) | 166, 266, 333, 478, 483 |
| BseJI | GATNNNNATC | 2 cut(s) | 387, 482 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 73, 117, 197 |
| BseMII | CTCAG | 1 cut(s) | 161 |
| BseNI | ACTGG | 2 cut(s) | 240, 304 |
| BseRI | GAGGAG | 1 cut(s) | 367 |
| BseXI | GCAGC | 2 cut(s) | 343, 575 |
| Bsh1236I | CGCG | 1 cut(s) | 130 |
| BshFI | GGCC | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 73, 117, 197 |
| BsmAI | GTCTC | 1 cut(s) | 28 |
| BsmBI | CGTCTC | 1 cut(s) | 28 |
| BsnI | GGCC | 1 cut(s) | 446 |
| Bsp143I | GATC | 2 cut(s) | 388, 477 |
| BspACI | CCGC | 3 cut(s) | 128, 168, 188 |
| BspANI | GGCC | 1 cut(s) | 446 |
| BspCNI | CTCAG | 1 cut(s) | 160 |
| BspFNI | CGCG | 1 cut(s) | 130 |
| BspHI | TCATGA | 1 cut(s) | 391 |
| BspMI | ACCTGC | 1 cut(s) | 67 |
| BspPI | GGATC | 1 cut(s) | 485 |
| BspTI | CTTAAG | 2 cut(s) | 317, 434 |
| BsrI | ACTGG | 2 cut(s) | 240, 304 |
| BssECI | CCNNGG | 2 cut(s) | 116, 270 |
| BssMI | GATC | 2 cut(s) | 388, 477 |
| BssT1I | CCWWGG | 1 cut(s) | 116 |
| Bst2UI | CCWGG | 1 cut(s) | 172 |
| Bst4CI | ACNGT | 1 cut(s) | 22 |
| BstAFI | CTTAAG | 2 cut(s) | 317, 434 |
| BstC8I | GCNNGC | 1 cut(s) | 586 |
| BstDEI | CTNAG | 2 cut(s) | 147, 496 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 115, 195 |
| BstF5I | GGATG | 5 cut(s) | 166, 266, 333, 478, 483 |
| BstFNI | CGCG | 1 cut(s) | 130 |
| BstKTI | GATC | 2 cut(s) | 391, 480 |
| BstMAI | GTCTC | 1 cut(s) | 28 |
| BstMBI | GATC | 2 cut(s) | 388, 477 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 104, 328, 337, 452 |
| BstNI | CCWGG | 1 cut(s) | 172 |
| BstSCI | CCNGG | 1 cut(s) | 170 |
| BstUI | CGCG | 1 cut(s) | 130 |
| BstV1I | GCAGC | 2 cut(s) | 343, 575 |
| Bsu36I | CCTNAGG | 1 cut(s) | 496 |
| BsuRI | GGCC | 1 cut(s) | 446 |
| BtsCI | GGATG | 5 cut(s) | 166, 266, 333, 478, 483 |
| BtsIMutI | CAGTG | 1 cut(s) | 297 |
| BveI | ACCTGC | 1 cut(s) | 67 |
| Cac8I | GCNNGC | 1 cut(s) | 586 |
| CciI | TCATGA | 1 cut(s) | 391 |
| CseI | GACGC | 1 cut(s) | 153 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 402, 437 |
| CviAII | CATG | 4 cut(s) | 392, 450, 559, 568 |
| CviJI | RGCY | 8 cut(s) | 77, 98, 107, 215, 409, 446, 455, 588 |
| CviKI_1 | RGCY | 8 cut(s) | 77, 98, 107, 215, 409, 446, 455, 588 |
| DdeI | CTNAG | 2 cut(s) | 147, 496 |
| DpnI | GATC | 2 cut(s) | 390, 479 |
| DpnII | GATC | 2 cut(s) | 388, 477 |
| DraI | TTTAAA | 1 cut(s) | 625 |
| EaeI | YGGCCR | 1 cut(s) | 444 |
| EciI | GGCGGA | 1 cut(s) | 157 |
| Eco130I | CCWWGG | 1 cut(s) | 116 |
| Eco32I | GATATC | 1 cut(s) | 518 |
| Eco57I | CTGAAG | 2 cut(s) | 99, 523 |
| Eco81I | CCTNAGG | 1 cut(s) | 496 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 115, 195 |
| EcoRI | GAATTC | 1 cut(s) | 229 |
| EcoRII | CCWGG | 1 cut(s) | 170 |
| EcoRV | GATATC | 1 cut(s) | 518 |
| EcoT14I | CCWWGG | 1 cut(s) | 116 |
| EcoT22I | ATGCAT | 1 cut(s) | 621 |
| ErhI | CCWWGG | 1 cut(s) | 116 |
| Esp3I | CGTCTC | 1 cut(s) | 28 |
| FaeI | CATG | 4 cut(s) | 395, 453, 562, 571 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 95, 127 |
| FatI | CATG | 4 cut(s) | 391, 449, 558, 567 |
| FbaI | TGATCA | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 2 cut(s) | 332, 589 |
| FokI | GGATG | 5 cut(s) | 173, 253, 340, 470, 485 |
| Fsp4HI | GCNGC | 2 cut(s) | 332, 589 |
| FspBI | CTAG | 1 cut(s) | 117 |
| GluI | GCNGC | 2 cut(s) | 332, 589 |
| HaeIII | GGCC | 1 cut(s) | 446 |
| HgaI | GACGC | 1 cut(s) | 153 |
| Hin1II | CATG | 4 cut(s) | 395, 453, 562, 571 |
| HinfI | GANTC | 2 cut(s) | 29, 275 |
| HphI | GGTGA | 2 cut(s) | 24, 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 56 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 271, 280, 542 |
| Hpy188III | TCNNGA | 1 cut(s) | 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 56 |
| Hpy99I | CGWCG | 1 cut(s) | 238 |
| HpyAV | CCTTC | 7 cut(s) | 67, 121, 205, 358, 463, 537, 565 |
| HpyCH4III | ACNGT | 1 cut(s) | 22 |
| HpyCH4IV | ACGT | 2 cut(s) | 7, 440 |
| HpyCH4V | TGCA | 4 cut(s) | 254, 331, 591, 619 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 104, 328, 337, 452 |
| HpyF3I | CTNAG | 2 cut(s) | 147, 496 |
| HpySE526I | ACGT | 2 cut(s) | 7, 440 |
| Hsp92II | CATG | 4 cut(s) | 395, 453, 562, 571 |
| Ksp22I | TGATCA | 1 cut(s) | 388 |
| Kzo9I | GATC | 2 cut(s) | 388, 477 |
| LpnPI | CCDG | 8 cut(s) | 72, 157, 166, 183, 184, 253, 285, 598 |
| Lsp1109I | GCAGC | 2 cut(s) | 343, 575 |
| LweI | GCATC | 2 cut(s) | 151, 318 |
| MaeI | CTAG | 1 cut(s) | 117 |
| MaeII | ACGT | 2 cut(s) | 7, 440 |
| MaeIII | GTNAC | 1 cut(s) | 142 |
| MalI | GATC | 2 cut(s) | 390, 479 |
| MboI | GATC | 2 cut(s) | 388, 477 |
| MboII | GAAGA | 1 cut(s) | 529 |
| MlsI | TGGCCA | 1 cut(s) | 446 |
| MluCI | AATT | 5 cut(s) | 202, 229, 345, 418, 506 |
| MluNI | TGGCCA | 1 cut(s) | 446 |
| Mox20I | TGGCCA | 1 cut(s) | 446 |
| Mph1103I | ATGCAT | 1 cut(s) | 621 |
| MscI | TGGCCA | 1 cut(s) | 446 |
| MseI | TTAA | 3 cut(s) | 318, 435, 624 |
| MslI | CAYNNNNRTG | 1 cut(s) | 596 |
| Msp20I | TGGCCA | 1 cut(s) | 446 |
| MspA1I | CMGCKG | 1 cut(s) | 588 |
| MspCI | CTTAAG | 2 cut(s) | 317, 434 |
| MspR9I | CCNGG | 1 cut(s) | 172 |
| MvaI | CCWGG | 1 cut(s) | 172 |
| MvnI | CGCG | 1 cut(s) | 130 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 104, 328, 337, 452 |
| NdeII | GATC | 2 cut(s) | 388, 477 |
| NlaIII | CATG | 4 cut(s) | 395, 453, 562, 571 |
| NsiI | ATGCAT | 1 cut(s) | 621 |
| PagI | TCATGA | 1 cut(s) | 391 |
| PfeI | GAWTC | 2 cut(s) | 29, 275 |
| PkrI | GCNGC | 2 cut(s) | 333, 590 |
| Psp6I | CCWGG | 1 cut(s) | 170 |
| PspGI | CCWGG | 1 cut(s) | 170 |
| PvuII | CAGCTG | 1 cut(s) | 588 |
| RseI | CAYNNNNRTG | 1 cut(s) | 596 |
| SaqAI | TTAA | 3 cut(s) | 318, 435, 624 |
| SatI | GCNGC | 2 cut(s) | 332, 589 |
| Sau3AI | GATC | 2 cut(s) | 388, 477 |
| ScrFI | CCNGG | 1 cut(s) | 172 |
| SfaNI | GCATC | 2 cut(s) | 151, 318 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 596 |
| SmlI | CTYRAG | 2 cut(s) | 317, 434 |
| SmoI | CTYRAG | 2 cut(s) | 317, 434 |
| Sse9I | AATT | 5 cut(s) | 202, 229, 345, 418, 506 |
| SsiI | CCGC | 3 cut(s) | 128, 168, 188 |
| SspMI | CTAG | 1 cut(s) | 117 |
| StyD4I | CCNGG | 1 cut(s) | 170 |
| StyI | CCWWGG | 1 cut(s) | 116 |
| TaaI | ACNGT | 1 cut(s) | 22 |
| TaiI | ACGT | 2 cut(s) | 10, 443 |
| TasI | AATT | 5 cut(s) | 202, 229, 345, 418, 506 |
| TfiI | GAWTC | 2 cut(s) | 29, 275 |
| Tru1I | TTAA | 3 cut(s) | 318, 435, 624 |
| Tru9I | TTAA | 3 cut(s) | 318, 435, 624 |
| TscAI | CASTG | 1 cut(s) | 304 |
| TseI | GCWGC | 2 cut(s) | 331, 588 |
| TspDTI | ATGAA | 2 cut(s) | 17, 584 |
| TspRI | CASTG | 1 cut(s) | 304 |
| Vha464I | CTTAAG | 2 cut(s) | 317, 434 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 115, 195 |
| XapI | RAATTY | 2 cut(s) | 202, 229 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 214 |
| XmaJI | CCTAGG | 1 cut(s) | 116 |
| XspI | CTAG | 1 cut(s) | 117 |
| Zsp2I | ATGCAT | 1 cut(s) | 621 |