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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 516, 850 |
| Acc65I | GGTACC | 2 cut(s) | 100, 489 |
| AccB1I | GGYRCC | 3 cut(s) | 100, 292, 489 |
| AccI | GTMKAC | 1 cut(s) | 243 |
| AciI | CCGC | 2 cut(s) | 731, 765 |
| AclWI | GGATC | 2 cut(s) | 8, 430 |
| AcsI | RAATTY | 1 cut(s) | 724 |
| AcuI | CTGAAG | 1 cut(s) | 405 |
| AdeI | CACNNNGTG | 1 cut(s) | 47 |
| AfaI | GTAC | 5 cut(s) | 102, 482, 491, 770, 837 |
| AgsI | TTSAA | 2 cut(s) | 128, 272 |
| AjnI | CCWGG | 1 cut(s) | 628 |
| AluBI | AGCT | 2 cut(s) | 143, 279 |
| AluI | AGCT | 2 cut(s) | 143, 279 |
| Alw21I | GWGCWC | 1 cut(s) | 40 |
| Alw26I | GTCTC | 1 cut(s) | 463 |
| AlwI | GGATC | 2 cut(s) | 8, 430 |
| Ama87I | CYCGRG | 1 cut(s) | 658 |
| AoxI | GGCC | 3 cut(s) | 164, 591, 631 |
| ApaI | GGGCCC | 1 cut(s) | 595 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| ApoI | RAATTY | 1 cut(s) | 724 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 400, 432 |
| Asp718I | GGTACC | 2 cut(s) | 100, 489 |
| AspS9I | GGNCC | 3 cut(s) | 172, 591, 592 |
| AsuHPI | GGTGA | 3 cut(s) | 59, 180, 347 |
| AvaI | CYCGRG | 1 cut(s) | 658 |
| AvaII | GGWCC | 1 cut(s) | 172 |
| AxyI | CCTNAGG | 1 cut(s) | 168 |
| BaeGI | GKGCMC | 1 cut(s) | 595 |
| BanI | GGYRCC | 3 cut(s) | 100, 292, 489 |
| BanII | GRGCYC | 1 cut(s) | 595 |
| Bbv12I | GWGCWC | 1 cut(s) | 40 |
| BbvI | GCAGC | 1 cut(s) | 296 |
| BccI | CCATC | 4 cut(s) | 44, 77, 347, 371 |
| BciT130I | CCWGG | 1 cut(s) | 630 |
| BcoDI | GTCTC | 1 cut(s) | 463 |
| BfaI | CTAG | 1 cut(s) | 44 |
| BisI | GCNGC | 1 cut(s) | 285 |
| BlsI | GCNGC | 1 cut(s) | 286 |
| Bme1390I | CCNGG | 1 cut(s) | 630 |
| Bme18I | GGWCC | 1 cut(s) | 172 |
| BmeT110I | CYCGRG | 1 cut(s) | 658 |
| BmgT120I | GGNCC | 3 cut(s) | 172, 591, 592 |
| BmiI | GGNNCC | 5 cut(s) | 102, 294, 381, 491, 593 |
| BmrFI | CCNGG | 1 cut(s) | 630 |
| BmsI | GCATC | 2 cut(s) | 309, 768 |
| BsaJI | CCNNGG | 1 cut(s) | 831 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 752, 782 |
| Bse1I | ACTGG | 1 cut(s) | 502 |
| Bse21I | CCTNAGG | 1 cut(s) | 168 |
| Bse3DI | GCAATG | 2 cut(s) | 294, 471 |
| BseBI | CCWGG | 1 cut(s) | 630 |
| BseDI | CCNNGG | 1 cut(s) | 831 |
| BseGI | GGATG | 1 cut(s) | 256 |
| BseMI | GCAATG | 2 cut(s) | 294, 471 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BseNI | ACTGG | 1 cut(s) | 502 |
| BseRI | GAGGAG | 1 cut(s) | 732 |
| BseSI | GKGCMC | 1 cut(s) | 595 |
| BseXI | GCAGC | 1 cut(s) | 296 |
| BsgI | GTGCAG | 1 cut(s) | 63 |
| BshFI | GGCC | 3 cut(s) | 166, 593, 633 |
| BshNI | GGYRCC | 3 cut(s) | 100, 292, 489 |
| BsiHKAI | GWGCWC | 1 cut(s) | 40 |
| BsiHKCI | CYCGRG | 1 cut(s) | 658 |
| BsmAI | GTCTC | 1 cut(s) | 463 |
| BsmI | GAATGC | 1 cut(s) | 735 |
| BsnI | GGCC | 3 cut(s) | 166, 593, 633 |
| BsoBI | CYCGRG | 1 cut(s) | 658 |
| Bsp120I | GGGCCC | 1 cut(s) | 591 |
| Bsp1286I | GDGCHC | 2 cut(s) | 40, 595 |
| Bsp143I | GATC | 2 cut(s) | 13, 422 |
| BspACI | CCGC | 2 cut(s) | 731, 765 |
| BspANI | GGCC | 3 cut(s) | 166, 593, 633 |
| BspCNI | CTCAG | 1 cut(s) | 275 |
| BspLI | GGNNCC | 5 cut(s) | 102, 294, 381, 491, 593 |
| BspPI | GGATC | 2 cut(s) | 8, 430 |
| BspT107I | GGYRCC | 3 cut(s) | 100, 292, 489 |
| BsrDI | GCAATG | 2 cut(s) | 294, 471 |
| BsrI | ACTGG | 1 cut(s) | 502 |
| BssECI | CCNNGG | 1 cut(s) | 831 |
| BssMI | GATC | 2 cut(s) | 13, 422 |
| BssT1I | CCWWGG | 1 cut(s) | 831 |
| Bst2UI | CCWGG | 1 cut(s) | 630 |
| Bst4CI | ACNGT | 2 cut(s) | 133, 586 |
| Bst6I | CTCTTC | 1 cut(s) | 221 |
| BstC8I | GCNNGC | 3 cut(s) | 141, 445, 733 |
| BstDEI | CTNAG | 2 cut(s) | 168, 262 |
| BstF5I | GGATG | 1 cut(s) | 256 |
| BstKTI | GATC | 2 cut(s) | 16, 425 |
| BstMAI | GTCTC | 1 cut(s) | 463 |
| BstMBI | GATC | 2 cut(s) | 13, 422 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 290, 787 |
| BstNI | CCWGG | 1 cut(s) | 630 |
| BstNSI | RCATGY | 1 cut(s) | 790 |
| BstSCI | CCNGG | 1 cut(s) | 628 |
| BstSLI | GKGCMC | 1 cut(s) | 595 |
| BstV1I | GCAGC | 1 cut(s) | 296 |
| Bsu36I | CCTNAGG | 1 cut(s) | 168 |
| BsuRI | GGCC | 3 cut(s) | 166, 593, 633 |
| BtgZI | GCGATG | 1 cut(s) | 24 |
| BtsCI | GGATG | 1 cut(s) | 256 |
| Cac8I | GCNNGC | 3 cut(s) | 141, 445, 733 |
| Cfr13I | GGNCC | 3 cut(s) | 172, 591, 592 |
| Csp6I | GTAC | 5 cut(s) | 101, 481, 490, 769, 836 |
| CviAII | CATG | 8 cut(s) | 32, 162, 247, 376, 448, 529, 643, 787 |
| CviJI | RGCY | 6 cut(s) | 143, 166, 279, 593, 613, 633 |
| CviKI_1 | RGCY | 6 cut(s) | 143, 166, 279, 593, 613, 633 |
| CviQI | GTAC | 5 cut(s) | 101, 481, 490, 769, 836 |
| DdeI | CTNAG | 2 cut(s) | 168, 262 |
| DpnI | GATC | 2 cut(s) | 15, 424 |
| DpnII | GATC | 2 cut(s) | 13, 422 |
| DraIII | CACNNNGTG | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 1 cut(s) | 221 |
| EarI | CTCTTC | 1 cut(s) | 221 |
| Eco130I | CCWWGG | 1 cut(s) | 831 |
| Eco24I | GRGCYC | 1 cut(s) | 595 |
| Eco32I | GATATC | 1 cut(s) | 796 |
| Eco47I | GGWCC | 1 cut(s) | 172 |
| Eco57I | CTGAAG | 1 cut(s) | 405 |
| Eco81I | CCTNAGG | 1 cut(s) | 168 |
| Eco88I | CYCGRG | 1 cut(s) | 658 |
| EcoO109I | RGGNCCY | 2 cut(s) | 172, 591 |
| EcoRII | CCWGG | 1 cut(s) | 628 |
| EcoRV | GATATC | 1 cut(s) | 796 |
| EcoT14I | CCWWGG | 1 cut(s) | 831 |
| EcoT38I | GRGCYC | 1 cut(s) | 595 |
| ErhI | CCWWGG | 1 cut(s) | 831 |
| FaeI | CATG | 8 cut(s) | 35, 165, 250, 379, 451, 532, 646, 790 |
| FatI | CATG | 8 cut(s) | 31, 161, 246, 375, 447, 528, 642, 786 |
| FauI | CCCGC | 2 cut(s) | 724, 758 |
| FblI | GTMKAC | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 1 cut(s) | 285 |
| FokI | GGATG | 1 cut(s) | 263 |
| FriOI | GRGCYC | 1 cut(s) | 595 |
| Fsp4HI | GCNGC | 1 cut(s) | 285 |
| FspBI | CTAG | 1 cut(s) | 44 |
| GluI | GCNGC | 1 cut(s) | 285 |
| HaeIII | GGCC | 3 cut(s) | 166, 593, 633 |
| Hin1II | CATG | 8 cut(s) | 35, 165, 250, 379, 451, 532, 646, 790 |
| HincII | GTYRAC | 3 cut(s) | 244, 507, 544 |
| HindII | GTYRAC | 3 cut(s) | 244, 507, 544 |
| HinfI | GANTC | 3 cut(s) | 260, 308, 338 |
| HphI | GGTGA | 3 cut(s) | 59, 180, 347 |
| Hpy166II | GTNNAC | 5 cut(s) | 244, 481, 507, 526, 544 |
| Hpy188I | TCNGA | 3 cut(s) | 265, 427, 705 |
| Hpy188III | TCNNGA | 3 cut(s) | 402, 462, 552 |
| Hpy8I | GTNNAC | 5 cut(s) | 244, 481, 507, 526, 544 |
| HpyAV | CCTTC | 2 cut(s) | 558, 691 |
| HpyCH4III | ACNGT | 2 cut(s) | 133, 586 |
| HpyCH4V | TGCA | 6 cut(s) | 80, 344, 443, 471, 536, 665 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 290, 787 |
| HpyF3I | CTNAG | 2 cut(s) | 168, 262 |
| Hsp92II | CATG | 8 cut(s) | 35, 165, 250, 379, 451, 532, 646, 790 |
| KpnI | GGTACC | 2 cut(s) | 104, 493 |
| Kzo9I | GATC | 2 cut(s) | 13, 422 |
| LmnI | GCTCC | 1 cut(s) | 43 |
| Lsp1109I | GCAGC | 1 cut(s) | 296 |
| LweI | GCATC | 2 cut(s) | 309, 768 |
| MaeI | CTAG | 1 cut(s) | 44 |
| MaeIII | GTNAC | 1 cut(s) | 186 |
| MalI | GATC | 2 cut(s) | 15, 424 |
| MboI | GATC | 2 cut(s) | 13, 422 |
| MboII | GAAGA | 4 cut(s) | 208, 238, 703, 706 |
| MhlI | GDGCHC | 2 cut(s) | 40, 595 |
| MluCI | AATT | 6 cut(s) | 27, 123, 272, 466, 555, 724 |
| MlyI | GAGTC | 2 cut(s) | 254, 347 |
| MmeI | TCCRAC | 1 cut(s) | 683 |
| MnlI | CCTC | 8 cut(s) | 28, 222, 259, 480, 582, 750, 753, 796 |
| MseI | TTAA | 4 cut(s) | 114, 135, 314, 678 |
| MslI | CAYNNNNRTG | 1 cut(s) | 476 |
| MspR9I | CCNGG | 1 cut(s) | 630 |
| Mva1269I | GAATGC | 1 cut(s) | 735 |
| MvaI | CCWGG | 1 cut(s) | 630 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 290, 787 |
| NdeII | GATC | 2 cut(s) | 13, 422 |
| NlaIII | CATG | 8 cut(s) | 35, 165, 250, 379, 451, 532, 646, 790 |
| NlaIV | GGNNCC | 5 cut(s) | 102, 294, 381, 491, 593 |
| NmuCI | GTSAC | 1 cut(s) | 186 |
| NspI | RCATGY | 1 cut(s) | 790 |
| PctI | GAATGC | 1 cut(s) | 735 |
| PfeI | GAWTC | 1 cut(s) | 308 |
| PkrI | GCNGC | 1 cut(s) | 286 |
| PleI | GAGTC | 2 cut(s) | 254, 346 |
| PpsI | GAGTC | 2 cut(s) | 254, 346 |
| PpuMI | RGGWCCY | 1 cut(s) | 172 |
| PsiI | TTATAA | 2 cut(s) | 516, 850 |
| Psp5II | RGGWCCY | 1 cut(s) | 172 |
| Psp6I | CCWGG | 1 cut(s) | 628 |
| PspGI | CCWGG | 1 cut(s) | 628 |
| PspN4I | GGNNCC | 5 cut(s) | 102, 294, 381, 491, 593 |
| PspOMI | GGGCCC | 1 cut(s) | 591 |
| PspPI | GGNCC | 3 cut(s) | 172, 591, 592 |
| PspPPI | RGGWCCY | 1 cut(s) | 172 |
| RsaI | GTAC | 5 cut(s) | 102, 482, 491, 770, 837 |
| RsaNI | GTAC | 5 cut(s) | 101, 481, 490, 769, 836 |
| RseI | CAYNNNNRTG | 1 cut(s) | 476 |
| SalI | GTCGAC | 1 cut(s) | 242 |
| SaqAI | TTAA | 4 cut(s) | 114, 135, 314, 678 |
| SatI | GCNGC | 1 cut(s) | 285 |
| Sau3AI | GATC | 2 cut(s) | 13, 422 |
| Sau96I | GGNCC | 3 cut(s) | 172, 591, 592 |
| SchI | GAGTC | 2 cut(s) | 254, 347 |
| ScrFI | CCNGG | 1 cut(s) | 630 |
| SduI | GDGCHC | 2 cut(s) | 40, 595 |
| SfaNI | GCATC | 2 cut(s) | 309, 768 |
| SinI | GGWCC | 1 cut(s) | 172 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 476 |
| Sse9I | AATT | 6 cut(s) | 27, 123, 272, 466, 555, 724 |
| SsiI | CCGC | 2 cut(s) | 731, 765 |
| SspMI | CTAG | 1 cut(s) | 44 |
| StyD4I | CCNGG | 1 cut(s) | 628 |
| StyI | CCWWGG | 1 cut(s) | 831 |
| TaaI | ACNGT | 2 cut(s) | 133, 586 |
| TaqI | TCGA | 2 cut(s) | 243, 403 |
| TasI | AATT | 6 cut(s) | 27, 123, 272, 466, 555, 724 |
| TfiI | GAWTC | 1 cut(s) | 308 |
| Tru1I | TTAA | 4 cut(s) | 114, 135, 314, 678 |
| Tru9I | TTAA | 4 cut(s) | 114, 135, 314, 678 |
| TseFI | GTSAC | 1 cut(s) | 186 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 1 cut(s) | 186 |
| TspDTI | ATGAA | 5 cut(s) | 20, 135, 267, 361, 631 |
| VpaK11BI | GGWCC | 1 cut(s) | 172 |
| XapI | RAATTY | 1 cut(s) | 724 |
| XceI | RCATGY | 1 cut(s) | 790 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 29 |
| XmiI | GTMKAC | 1 cut(s) | 243 |
| XspI | CTAG | 1 cut(s) | 44 |