Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_L12 | PF00542 | 135 - 201 | 1.1e-21 | Ribosomal protein L7/L12 C-terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 156, 324, 345, 389, 434 |
| AclWI | GGATC | 1 cut(s) | 147 |
| AcuI | CTGAAG | 2 cut(s) | 274, 548 |
| AfaI | GTAC | 1 cut(s) | 600 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 66 |
| AflII | CTTAAG | 1 cut(s) | 575 |
| AgsI | TTSAA | 1 cut(s) | 86 |
| AluBI | AGCT | 2 cut(s) | 415, 574 |
| AluI | AGCT | 2 cut(s) | 415, 574 |
| Alw26I | GTCTC | 1 cut(s) | 200 |
| AlwI | GGATC | 1 cut(s) | 147 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 194 |
| AoxI | GGCC | 4 cut(s) | 304, 319, 362, 557 |
| ApeKI | GCWGC | 2 cut(s) | 197, 431 |
| AspLEI | GCGC | 1 cut(s) | 231 |
| AspS9I | GGNCC | 8 cut(s) | 69, 141, 213, 250, 304, 320, 362, 557 |
| AvaII | GGWCC | 4 cut(s) | 69, 141, 213, 250 |
| AxyI | CCTNAGG | 1 cut(s) | 64 |
| BbvI | GCAGC | 2 cut(s) | 209, 443 |
| BccI | CCATC | 2 cut(s) | 87, 290 |
| BcoDI | GTCTC | 1 cut(s) | 200 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| BfrI | CTTAAG | 1 cut(s) | 575 |
| BisI | GCNGC | 3 cut(s) | 198, 432, 435 |
| BlsI | GCNGC | 3 cut(s) | 199, 433, 436 |
| Bme18I | GGWCC | 4 cut(s) | 69, 141, 213, 250 |
| BmgT120I | GGNCC | 8 cut(s) | 69, 141, 213, 250, 304, 320, 362, 557 |
| BmiI | GGNNCC | 5 cut(s) | 70, 142, 143, 322, 516 |
| BmsI | GCATC | 1 cut(s) | 356 |
| BpmI | CTGGAG | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 2 cut(s) | 245, 437 |
| BsaBI | GATNNNNATC | 1 cut(s) | 446 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 66 |
| Bse1I | ACTGG | 2 cut(s) | 27, 606 |
| Bse21I | CCTNAGG | 1 cut(s) | 64 |
| Bse3DI | GCAATG | 1 cut(s) | 231 |
| Bse8I | GATNNNNATC | 1 cut(s) | 446 |
| BseGI | GGATG | 2 cut(s) | 282, 342 |
| BseJI | GATNNNNATC | 1 cut(s) | 446 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 66 |
| BseMI | GCAATG | 1 cut(s) | 231 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseNI | ACTGG | 2 cut(s) | 27, 606 |
| BseRI | GAGGAG | 1 cut(s) | 563 |
| BseXI | GCAGC | 2 cut(s) | 209, 443 |
| BsgI | GTGCAG | 1 cut(s) | 169 |
| BshFI | GGCC | 4 cut(s) | 306, 321, 364, 559 |
| BslFI | GGGAC | 3 cut(s) | 127, 327, 495 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 66 |
| BsmAI | GTCTC | 1 cut(s) | 200 |
| BsmFI | GGGAC | 3 cut(s) | 127, 327, 495 |
| BsnI | GGCC | 4 cut(s) | 306, 321, 364, 559 |
| Bsp143I | GATC | 4 cut(s) | 152, 241, 441, 447 |
| BspACI | CCGC | 5 cut(s) | 156, 324, 345, 389, 434 |
| BspANI | GGCC | 4 cut(s) | 306, 321, 364, 559 |
| BspCNI | CTCAG | 1 cut(s) | 344 |
| BspLI | GGNNCC | 5 cut(s) | 70, 142, 143, 322, 516 |
| BspMAI | CTGCAG | 1 cut(s) | 199 |
| BspPI | GGATC | 1 cut(s) | 147 |
| BspTI | CTTAAG | 1 cut(s) | 575 |
| BsrDI | GCAATG | 1 cut(s) | 231 |
| BsrI | ACTGG | 2 cut(s) | 27, 606 |
| BssMI | GATC | 4 cut(s) | 152, 241, 441, 447 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 595 |
| Bst6I | CTCTTC | 1 cut(s) | 293 |
| BstAFI | CTTAAG | 1 cut(s) | 575 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 111, 202, 366 |
| BstDEI | CTNAG | 3 cut(s) | 64, 331, 381 |
| BstF5I | GGATG | 2 cut(s) | 282, 342 |
| BstHHI | GCGC | 1 cut(s) | 231 |
| BstKTI | GATC | 4 cut(s) | 155, 244, 444, 450 |
| BstMAI | GTCTC | 1 cut(s) | 200 |
| BstMBI | GATC | 4 cut(s) | 152, 241, 441, 447 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 183, 197 |
| BstNSI | RCATGY | 1 cut(s) | 9 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 2 cut(s) | 209, 443 |
| BstX2I | RGATCY | 1 cut(s) | 152 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 152 |
| Bsu36I | CCTNAGG | 1 cut(s) | 64 |
| BsuRI | GGCC | 4 cut(s) | 306, 321, 364, 559 |
| BtsCI | GGATG | 2 cut(s) | 282, 342 |
| BtsI | GCAGTG | 1 cut(s) | 192 |
| BtsIMutI | CAGTG | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 111, 202, 366 |
| CaiI | CAGNNNCTG | 1 cut(s) | 194 |
| CfoI | GCGC | 1 cut(s) | 231 |
| Cfr13I | GGNCC | 8 cut(s) | 69, 141, 213, 250, 304, 320, 362, 557 |
| CseI | GACGC | 3 cut(s) | 27, 437, 500 |
| Csp6I | GTAC | 1 cut(s) | 599 |
| CviAII | CATG | 3 cut(s) | 6, 32, 272 |
| CviQI | GTAC | 1 cut(s) | 599 |
| DdeI | CTNAG | 3 cut(s) | 64, 331, 381 |
| DpnI | GATC | 4 cut(s) | 154, 243, 443, 449 |
| DpnII | GATC | 4 cut(s) | 152, 241, 441, 447 |
| Eam1104I | CTCTTC | 1 cut(s) | 293 |
| EarI | CTCTTC | 1 cut(s) | 293 |
| EciI | GGCGGA | 2 cut(s) | 145, 404 |
| Eco47I | GGWCC | 4 cut(s) | 69, 141, 213, 250 |
| Eco57I | CTGAAG | 2 cut(s) | 274, 548 |
| Eco81I | CCTNAGG | 1 cut(s) | 64 |
| EcoO109I | RGGNCCY | 2 cut(s) | 141, 557 |
| FaeI | CATG | 3 cut(s) | 9, 35, 275 |
| FaiI | YATR | 7 cut(s) | 7, 33, 98, 273, 318, 410, 452 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 66, 98 |
| FaqI | GGGAC | 3 cut(s) | 127, 327, 495 |
| FatI | CATG | 3 cut(s) | 5, 31, 271 |
| FauI | CCCGC | 2 cut(s) | 331, 352 |
| Fnu4HI | GCNGC | 3 cut(s) | 198, 432, 435 |
| FokI | GGATG | 2 cut(s) | 269, 349 |
| Fsp4HI | GCNGC | 3 cut(s) | 198, 432, 435 |
| GlaI | GCGC | 1 cut(s) | 230 |
| GluI | GCNGC | 3 cut(s) | 198, 432, 435 |
| GsuI | CTGGAG | 1 cut(s) | 10 |
| HaeIII | GGCC | 4 cut(s) | 306, 321, 364, 559 |
| HgaI | GACGC | 3 cut(s) | 27, 437, 500 |
| HhaI | GCGC | 1 cut(s) | 231 |
| Hin1II | CATG | 3 cut(s) | 9, 35, 275 |
| Hin6I | GCGC | 1 cut(s) | 229 |
| HinP1I | GCGC | 1 cut(s) | 229 |
| HincII | GTYRAC | 1 cut(s) | 568 |
| HindII | GTYRAC | 1 cut(s) | 568 |
| HindIII | AAGCTT | 2 cut(s) | 413, 572 |
| HinfI | GANTC | 4 cut(s) | 220, 340, 356, 377 |
| Hpy166II | GTNNAC | 1 cut(s) | 568 |
| Hpy188I | TCNGA | 1 cut(s) | 355 |
| Hpy188III | TCNNGA | 3 cut(s) | 150, 224, 445 |
| Hpy8I | GTNNAC | 1 cut(s) | 568 |
| Hpy99I | CGWCG | 1 cut(s) | 21 |
| HpyAV | CCTTC | 2 cut(s) | 388, 526 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 595 |
| HpyCH4V | TGCA | 2 cut(s) | 186, 197 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 183, 197 |
| HpyF3I | CTNAG | 3 cut(s) | 64, 331, 381 |
| Hsp92II | CATG | 3 cut(s) | 9, 35, 275 |
| HspAI | GCGC | 1 cut(s) | 229 |
| KflI | GGGWCCC | 1 cut(s) | 141 |
| Kzo9I | GATC | 4 cut(s) | 152, 241, 441, 447 |
| LmnI | GCTCC | 1 cut(s) | 520 |
| Lsp1109I | GCAGC | 2 cut(s) | 209, 443 |
| LweI | GCATC | 1 cut(s) | 356 |
| MaeIII | GTNAC | 2 cut(s) | 167, 538 |
| MalI | GATC | 4 cut(s) | 154, 243, 443, 449 |
| MboI | GATC | 4 cut(s) | 152, 241, 441, 447 |
| MboII | GAAGA | 4 cut(s) | 74, 280, 342, 541 |
| MflI | RGATCY | 1 cut(s) | 152 |
| MlyI | GAGTC | 2 cut(s) | 349, 371 |
| MnlI | CCTC | 8 cut(s) | 191, 261, 263, 296, 317, 451, 541, 544 |
| MseI | TTAA | 1 cut(s) | 576 |
| MspA1I | CMGCKG | 1 cut(s) | 434 |
| MspCI | CTTAAG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 183, 197 |
| NdeII | GATC | 4 cut(s) | 152, 241, 441, 447 |
| NlaIII | CATG | 3 cut(s) | 9, 35, 275 |
| NlaIV | GGNNCC | 5 cut(s) | 70, 142, 143, 322, 516 |
| NmuCI | GTSAC | 2 cut(s) | 167, 538 |
| NspI | RCATGY | 1 cut(s) | 9 |
| PaeI | GCATGC | 1 cut(s) | 9 |
| PfeI | GAWTC | 2 cut(s) | 220, 356 |
| PkrI | GCNGC | 3 cut(s) | 199, 433, 436 |
| PleI | GAGTC | 2 cut(s) | 348, 371 |
| PpsI | GAGTC | 2 cut(s) | 348, 371 |
| PpuMI | RGGWCCY | 1 cut(s) | 141 |
| Psp5II | RGGWCCY | 1 cut(s) | 141 |
| PspN4I | GGNNCC | 5 cut(s) | 70, 142, 143, 322, 516 |
| PspPI | GGNCC | 8 cut(s) | 69, 141, 213, 250, 304, 320, 362, 557 |
| PspPPI | RGGWCCY | 1 cut(s) | 141 |
| PstI | CTGCAG | 1 cut(s) | 199 |
| PstNI | CAGNNNCTG | 1 cut(s) | 194 |
| PsuI | RGATCY | 1 cut(s) | 152 |
| RsaI | GTAC | 1 cut(s) | 600 |
| RsaNI | GTAC | 1 cut(s) | 599 |
| SaqAI | TTAA | 1 cut(s) | 576 |
| SatI | GCNGC | 3 cut(s) | 198, 432, 435 |
| Sau3AI | GATC | 4 cut(s) | 152, 241, 441, 447 |
| Sau96I | GGNCC | 8 cut(s) | 69, 141, 213, 250, 304, 320, 362, 557 |
| SchI | GAGTC | 2 cut(s) | 349, 371 |
| SetI | ASST | 9 cut(s) | 65, 255, 317, 387, 399, 417, 462, 576, 589 |
| SfaNI | GCATC | 1 cut(s) | 356 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SinI | GGWCC | 4 cut(s) | 69, 141, 213, 250 |
| SmlI | CTYRAG | 3 cut(s) | 224, 416, 575 |
| SmoI | CTYRAG | 3 cut(s) | 224, 416, 575 |
| SphI | GCATGC | 1 cut(s) | 9 |
| SsiI | CCGC | 5 cut(s) | 156, 324, 345, 389, 434 |
| TaaI | ACNGT | 2 cut(s) | 121, 595 |
| TauI | GCSGC | 1 cut(s) | 437 |
| TfiI | GAWTC | 2 cut(s) | 220, 356 |
| Tru1I | TTAA | 1 cut(s) | 576 |
| Tru9I | TTAA | 1 cut(s) | 576 |
| TscAI | CASTG | 1 cut(s) | 199 |
| TseFI | GTSAC | 2 cut(s) | 167, 538 |
| TseI | GCWGC | 2 cut(s) | 197, 431 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 538 |
| TspGWI | ACGGA | 1 cut(s) | 226 |
| TspRI | CASTG | 1 cut(s) | 199 |
| Vha464I | CTTAAG | 1 cut(s) | 575 |
| VpaK11BI | GGWCC | 4 cut(s) | 69, 141, 213, 250 |
| XceI | RCATGY | 1 cut(s) | 9 |