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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 997 |
| AccI | GTMKAC | 2 cut(s) | 594, 981 |
| AciI | CCGC | 2 cut(s) | 734, 905 |
| AcoI | YGGCCR | 1 cut(s) | 682 |
| AcsI | RAATTY | 2 cut(s) | 25, 647 |
| AfaI | GTAC | 4 cut(s) | 273, 522, 665, 871 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 832 |
| AflIII | ACRYGT | 1 cut(s) | 1041 |
| AgsI | TTSAA | 2 cut(s) | 288, 397 |
| AhlI | ACTAGT | 1 cut(s) | 872 |
| AjnI | CCWGG | 2 cut(s) | 679, 825 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 284, 316 |
| AleI | CACNNNNGTG | 1 cut(s) | 619 |
| AluBI | AGCT | 3 cut(s) | 223, 540, 914 |
| AluI | AGCT | 3 cut(s) | 223, 540, 914 |
| Alw21I | GWGCWC | 1 cut(s) | 616 |
| Alw26I | GTCTC | 1 cut(s) | 1037 |
| Alw44I | GTGCAC | 1 cut(s) | 612 |
| AoxI | GGCC | 2 cut(s) | 381, 682 |
| ApaLI | GTGCAC | 1 cut(s) | 612 |
| ApeKI | GCWGC | 1 cut(s) | 223 |
| ApoI | RAATTY | 2 cut(s) | 25, 647 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 827, 859 |
| AspS9I | GGNCC | 4 cut(s) | 381, 849, 907, 1009 |
| AsuHPI | GGTGA | 3 cut(s) | 527, 748, 973 |
| AvaII | GGWCC | 3 cut(s) | 849, 907, 1009 |
| BaeGI | GKGCMC | 1 cut(s) | 616 |
| BalI | TGGCCA | 1 cut(s) | 684 |
| BauI | CACGAG | 1 cut(s) | 120 |
| BbsI | GAAGAC | 1 cut(s) | 330 |
| Bbv12I | GWGCWC | 1 cut(s) | 616 |
| BbvCI | CCTCAGC | 1 cut(s) | 765 |
| BbvI | GCAGC | 1 cut(s) | 210 |
| BccI | CCATC | 5 cut(s) | 39, 114, 349, 395, 565 |
| BceAI | ACGGC | 1 cut(s) | 747 |
| BciT130I | CCWGG | 2 cut(s) | 681, 827 |
| BcoDI | GTCTC | 1 cut(s) | 1037 |
| BcuI | ACTAGT | 1 cut(s) | 872 |
| BfaI | CTAG | 3 cut(s) | 329, 425, 873 |
| BfuAI | ACCTGC | 1 cut(s) | 997 |
| BisI | GCNGC | 1 cut(s) | 224 |
| BlsI | GCNGC | 1 cut(s) | 225 |
| BmcAI | AGTACT | 1 cut(s) | 871 |
| Bme1390I | CCNGG | 2 cut(s) | 681, 827 |
| Bme18I | GGWCC | 3 cut(s) | 849, 907, 1009 |
| BmgT120I | GGNCC | 4 cut(s) | 381, 849, 907, 1009 |
| BmiI | GGNNCC | 2 cut(s) | 699, 850 |
| BmrFI | CCNGG | 2 cut(s) | 681, 827 |
| BmsI | GCATC | 3 cut(s) | 125, 134, 892 |
| BpiI | GAAGAC | 1 cut(s) | 330 |
| Bpu10I | CCTNAGC | 1 cut(s) | 765 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 832 |
| Bse1I | ACTGG | 2 cut(s) | 613, 989 |
| Bse3DI | GCAATG | 1 cut(s) | 353 |
| BseBI | CCWGG | 2 cut(s) | 681, 827 |
| BseGI | GGATG | 6 cut(s) | 50, 151, 252, 277, 406, 979 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 832 |
| BseMI | GCAATG | 1 cut(s) | 353 |
| BseMII | CTCAG | 3 cut(s) | 71, 558, 779 |
| BseNI | ACTGG | 2 cut(s) | 613, 989 |
| BseSI | GKGCMC | 1 cut(s) | 616 |
| BseXI | GCAGC | 1 cut(s) | 210 |
| BseYI | CCCAGC | 1 cut(s) | 49 |
| BsgI | GTGCAG | 1 cut(s) | 170 |
| BshFI | GGCC | 2 cut(s) | 383, 684 |
| BsiHKAI | GWGCWC | 1 cut(s) | 616 |
| BslFI | GGGAC | 1 cut(s) | 862 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 832 |
| BsmAI | GTCTC | 1 cut(s) | 1037 |
| BsmFI | GGGAC | 1 cut(s) | 862 |
| BsmI | GAATGC | 1 cut(s) | 445 |
| BsnI | GGCC | 2 cut(s) | 383, 684 |
| Bsp1286I | GDGCHC | 1 cut(s) | 616 |
| Bsp143I | GATC | 1 cut(s) | 775 |
| BspACI | CCGC | 2 cut(s) | 734, 905 |
| BspANI | GGCC | 2 cut(s) | 383, 684 |
| BspCNI | CTCAG | 4 cut(s) | 72, 559, 778, 1047 |
| BspHI | TCATGA | 1 cut(s) | 810 |
| BspLI | GGNNCC | 2 cut(s) | 699, 850 |
| BspMI | ACCTGC | 1 cut(s) | 997 |
| BsrDI | GCAATG | 1 cut(s) | 353 |
| BsrI | ACTGG | 2 cut(s) | 613, 989 |
| BssMI | GATC | 1 cut(s) | 775 |
| BssSI | CACGAG | 1 cut(s) | 120 |
| Bst2BI | CACGAG | 1 cut(s) | 120 |
| Bst2UI | CCWGG | 2 cut(s) | 681, 827 |
| Bst4CI | ACNGT | 1 cut(s) | 713 |
| Bst6I | CTCTTC | 1 cut(s) | 287 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 122, 164 |
| BstC8I | GCNNGC | 1 cut(s) | 169 |
| BstDEI | CTNAG | 7 cut(s) | 80, 88, 439, 567, 743, 765, 1034 |
| BstF5I | GGATG | 6 cut(s) | 50, 151, 252, 277, 406, 979 |
| BstKTI | GATC | 1 cut(s) | 778 |
| BstMAI | GTCTC | 1 cut(s) | 1037 |
| BstMBI | GATC | 1 cut(s) | 775 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 122, 148, 164, 676, 911, 920 |
| BstNI | CCWGG | 2 cut(s) | 681, 827 |
| BstNSI | RCATGY | 2 cut(s) | 104, 1045 |
| BstSCI | CCNGG | 2 cut(s) | 679, 825 |
| BstSLI | GKGCMC | 1 cut(s) | 616 |
| BstV1I | GCAGC | 1 cut(s) | 210 |
| BstV2I | GAAGAC | 1 cut(s) | 330 |
| BsuRI | GGCC | 2 cut(s) | 383, 684 |
| BtsCI | GGATG | 6 cut(s) | 50, 151, 252, 277, 406, 979 |
| BtsIMutI | CAGTG | 3 cut(s) | 606, 633, 888 |
| BveI | ACCTGC | 1 cut(s) | 997 |
| Cac8I | GCNNGC | 1 cut(s) | 169 |
| CciI | TCATGA | 1 cut(s) | 810 |
| Cfr13I | GGNCC | 4 cut(s) | 381, 849, 907, 1009 |
| CpoI | CGGWCCG | 1 cut(s) | 907 |
| Csp6I | GTAC | 4 cut(s) | 272, 521, 664, 870 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 769, 804 |
| CspI | CGGWCCG | 1 cut(s) | 907 |
| CviAII | CATG | 6 cut(s) | 101, 164, 490, 535, 811, 1042 |
| CviQI | GTAC | 4 cut(s) | 272, 521, 664, 870 |
| DdeI | CTNAG | 7 cut(s) | 80, 88, 439, 567, 743, 765, 1034 |
| DpnI | GATC | 1 cut(s) | 777 |
| DpnII | GATC | 1 cut(s) | 775 |
| EaeI | YGGCCR | 1 cut(s) | 682 |
| Eam1104I | CTCTTC | 1 cut(s) | 287 |
| EarI | CTCTTC | 1 cut(s) | 287 |
| Eco32I | GATATC | 1 cut(s) | 481 |
| Eco47I | GGWCC | 3 cut(s) | 849, 907, 1009 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1009 |
| EcoRII | CCWGG | 2 cut(s) | 679, 825 |
| EcoRV | GATATC | 1 cut(s) | 481 |
| FaeI | CATG | 6 cut(s) | 104, 167, 493, 538, 814, 1045 |
| FaqI | GGGAC | 1 cut(s) | 862 |
| FatI | CATG | 6 cut(s) | 100, 163, 489, 534, 810, 1041 |
| FauNDI | CATATG | 1 cut(s) | 1002 |
| FblI | GTMKAC | 2 cut(s) | 594, 981 |
| Fnu4HI | GCNGC | 1 cut(s) | 224 |
| FokI | GGATG | 6 cut(s) | 57, 158, 239, 264, 413, 986 |
| Fsp4HI | GCNGC | 1 cut(s) | 224 |
| FspBI | CTAG | 3 cut(s) | 329, 425, 873 |
| GluI | GCNGC | 1 cut(s) | 224 |
| GsaI | CCCAGC | 1 cut(s) | 53 |
| HaeIII | GGCC | 2 cut(s) | 383, 684 |
| Hin1II | CATG | 6 cut(s) | 104, 167, 493, 538, 814, 1045 |
| HincII | GTYRAC | 2 cut(s) | 595, 729 |
| HindII | GTYRAC | 2 cut(s) | 595, 729 |
| HinfI | GANTC | 2 cut(s) | 36, 739 |
| HphI | GGTGA | 3 cut(s) | 527, 748, 973 |
| Hpy166II | GTNNAC | 4 cut(s) | 595, 614, 729, 982 |
| Hpy188I | TCNGA | 7 cut(s) | 41, 81, 186, 257, 568, 911, 1037 |
| Hpy188III | TCNNGA | 3 cut(s) | 135, 471, 811 |
| Hpy8I | GTNNAC | 4 cut(s) | 595, 614, 729, 982 |
| HpyAV | CCTTC | 3 cut(s) | 132, 148, 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 713 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 122, 148, 164, 676, 911, 920 |
| HpyF3I | CTNAG | 7 cut(s) | 80, 88, 439, 567, 743, 765, 1034 |
| Hsp92II | CATG | 6 cut(s) | 104, 167, 493, 538, 814, 1045 |
| Kzo9I | GATC | 1 cut(s) | 775 |
| LmnI | GCTCC | 1 cut(s) | 428 |
| Lsp1109I | GCAGC | 1 cut(s) | 210 |
| LweI | GCATC | 3 cut(s) | 125, 134, 892 |
| MaeI | CTAG | 3 cut(s) | 329, 425, 873 |
| MaeIII | GTNAC | 1 cut(s) | 530 |
| MalI | GATC | 1 cut(s) | 777 |
| MboI | GATC | 1 cut(s) | 775 |
| MboII | GAAGA | 3 cut(s) | 101, 304, 335 |
| MhlI | GDGCHC | 1 cut(s) | 616 |
| MlsI | TGGCCA | 1 cut(s) | 684 |
| MluCI | AATT | 8 cut(s) | 25, 299, 506, 647, 718, 819, 931, 955 |
| MluNI | TGGCCA | 1 cut(s) | 684 |
| MnlI | CCTC | 7 cut(s) | 35, 75, 85, 258, 358, 444, 774 |
| Mox20I | TGGCCA | 1 cut(s) | 684 |
| MscI | TGGCCA | 1 cut(s) | 684 |
| MseI | TTAA | 4 cut(s) | 12, 30, 509, 954 |
| MslI | CAYNNNNRTG | 1 cut(s) | 619 |
| Msp20I | TGGCCA | 1 cut(s) | 684 |
| MspR9I | CCNGG | 2 cut(s) | 681, 827 |
| Mva1269I | GAATGC | 1 cut(s) | 445 |
| MvaI | CCWGG | 2 cut(s) | 681, 827 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 122, 148, 164, 676, 911, 920 |
| NdeI | CATATG | 1 cut(s) | 1002 |
| NdeII | GATC | 1 cut(s) | 775 |
| NlaIII | CATG | 6 cut(s) | 104, 167, 493, 538, 814, 1045 |
| NlaIV | GGNNCC | 2 cut(s) | 699, 850 |
| NspI | RCATGY | 2 cut(s) | 104, 1045 |
| OliI | CACNNNNGTG | 1 cut(s) | 619 |
| PagI | TCATGA | 1 cut(s) | 810 |
| PciI | ACATGT | 1 cut(s) | 1041 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 127 |
| PctI | GAATGC | 1 cut(s) | 445 |
| PfeI | GAWTC | 2 cut(s) | 36, 739 |
| PfoI | TCCNGGA | 1 cut(s) | 825 |
| PkrI | GCNGC | 1 cut(s) | 225 |
| PpuMI | RGGWCCY | 1 cut(s) | 1009 |
| PscI | ACATGT | 1 cut(s) | 1041 |
| Psp5II | RGGWCCY | 1 cut(s) | 1009 |
| Psp6I | CCWGG | 2 cut(s) | 679, 825 |
| PspFI | CCCAGC | 1 cut(s) | 49 |
| PspGI | CCWGG | 2 cut(s) | 679, 825 |
| PspN4I | GGNNCC | 2 cut(s) | 699, 850 |
| PspPI | GGNCC | 4 cut(s) | 381, 849, 907, 1009 |
| PspPPI | RGGWCCY | 1 cut(s) | 1009 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 853, 885 |
| RsaI | GTAC | 4 cut(s) | 273, 522, 665, 871 |
| RsaNI | GTAC | 4 cut(s) | 272, 521, 664, 870 |
| RseI | CAYNNNNRTG | 1 cut(s) | 619 |
| Rsr2I | CGGWCCG | 1 cut(s) | 907 |
| RsrII | CGGWCCG | 1 cut(s) | 907 |
| SalI | GTCGAC | 1 cut(s) | 593 |
| SaqAI | TTAA | 4 cut(s) | 12, 30, 509, 954 |
| SatI | GCNGC | 1 cut(s) | 224 |
| Sau3AI | GATC | 1 cut(s) | 775 |
| Sau96I | GGNCC | 4 cut(s) | 381, 849, 907, 1009 |
| ScaI | AGTACT | 1 cut(s) | 871 |
| ScrFI | CCNGG | 2 cut(s) | 681, 827 |
| SduI | GDGCHC | 1 cut(s) | 616 |
| SetI | ASST | 7 cut(s) | 225, 330, 542, 546, 665, 916, 1011 |
| SfaNI | GCATC | 3 cut(s) | 125, 134, 892 |
| SinI | GGWCC | 3 cut(s) | 849, 907, 1009 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 619 |
| SpeI | ACTAGT | 1 cut(s) | 872 |
| Sse9I | AATT | 8 cut(s) | 25, 299, 506, 647, 718, 819, 931, 955 |
| SsiI | CCGC | 2 cut(s) | 734, 905 |
| SspI | AATATT | 1 cut(s) | 967 |
| SspMI | CTAG | 3 cut(s) | 329, 425, 873 |
| StyD4I | CCNGG | 2 cut(s) | 679, 825 |
| TaaI | ACNGT | 1 cut(s) | 713 |
| TaqI | TCGA | 2 cut(s) | 449, 594 |
| TasI | AATT | 8 cut(s) | 25, 299, 506, 647, 718, 819, 931, 955 |
| TatI | WGTACW | 3 cut(s) | 271, 520, 869 |
| TfiI | GAWTC | 2 cut(s) | 36, 739 |
| Tru1I | TTAA | 4 cut(s) | 12, 30, 509, 954 |
| Tru9I | TTAA | 4 cut(s) | 12, 30, 509, 954 |
| TscAI | CASTG | 3 cut(s) | 613, 640, 895 |
| TseI | GCWGC | 1 cut(s) | 223 |
| TspDTI | ATGAA | 5 cut(s) | 152, 336, 799, 827, 1035 |
| TspRI | CASTG | 3 cut(s) | 613, 640, 895 |
| VneI | GTGCAC | 1 cut(s) | 612 |
| VpaK11BI | GGWCC | 3 cut(s) | 849, 907, 1009 |
| XapI | RAATTY | 2 cut(s) | 25, 647 |
| XceI | RCATGY | 2 cut(s) | 104, 1045 |
| XmiI | GTMKAC | 2 cut(s) | 594, 981 |
| XspI | CTAG | 3 cut(s) | 329, 425, 873 |
| ZrmI | AGTACT | 1 cut(s) | 871 |