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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 294 |
| AciI | CCGC | 2 cut(s) | 426, 531 |
| AclWI | GGATC | 5 cut(s) | 230, 263, 276, 461, 474 |
| AcuI | CTGAAG | 1 cut(s) | 149 |
| AfaI | GTAC | 1 cut(s) | 44 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 278, 476 |
| AgsI | TTSAA | 1 cut(s) | 61 |
| AjnI | CCWGG | 2 cut(s) | 208, 277 |
| AluBI | AGCT | 2 cut(s) | 17, 158 |
| AluI | AGCT | 2 cut(s) | 17, 158 |
| Alw26I | GTCTC | 1 cut(s) | 245 |
| AlwI | GGATC | 5 cut(s) | 230, 263, 276, 461, 474 |
| Ama87I | CYCGRG | 1 cut(s) | 354 |
| AoxI | GGCC | 1 cut(s) | 211 |
| ApeKI | GCWGC | 2 cut(s) | 78, 155 |
| AspLEI | GCGC | 1 cut(s) | 444 |
| AvaI | CYCGRG | 1 cut(s) | 354 |
| BamHI | GGATCC | 2 cut(s) | 268, 466 |
| BbsI | GAAGAC | 1 cut(s) | 176 |
| BbvI | GCAGC | 2 cut(s) | 90, 167 |
| BceAI | ACGGC | 1 cut(s) | 198 |
| BciT130I | CCWGG | 2 cut(s) | 210, 279 |
| BcoDI | GTCTC | 1 cut(s) | 245 |
| BfmI | CTRYAG | 1 cut(s) | 105 |
| BisI | GCNGC | 2 cut(s) | 79, 156 |
| BlsI | GCNGC | 2 cut(s) | 80, 157 |
| Bme1390I | CCNGG | 2 cut(s) | 210, 279 |
| BmeT110I | CYCGRG | 1 cut(s) | 354 |
| BmiI | GGNNCC | 2 cut(s) | 270, 468 |
| BmrFI | CCNGG | 2 cut(s) | 210, 279 |
| BmsI | GCATC | 2 cut(s) | 186, 429 |
| BpiI | GAAGAC | 1 cut(s) | 176 |
| BsaI | GGTCTC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 1 cut(s) | 474 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 6, 36 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 278, 476 |
| Bse1I | ACTGG | 1 cut(s) | 153 |
| Bse3DI | GCAATG | 1 cut(s) | 421 |
| BseBI | CCWGG | 2 cut(s) | 210, 279 |
| BseDI | CCNNGG | 1 cut(s) | 474 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 278, 476 |
| BseMI | GCAATG | 1 cut(s) | 421 |
| BseMII | CTCAG | 1 cut(s) | 405 |
| BseNI | ACTGG | 1 cut(s) | 153 |
| BseXI | GCAGC | 2 cut(s) | 90, 167 |
| BseYI | CCCAGC | 1 cut(s) | 410 |
| BsgI | GTGCAG | 1 cut(s) | 97 |
| BshFI | GGCC | 1 cut(s) | 213 |
| BsiHKCI | CYCGRG | 1 cut(s) | 354 |
| BslFI | GGGAC | 1 cut(s) | 467 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 278, 476 |
| BsmAI | GTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 467 |
| BsmI | GAATGC | 1 cut(s) | 428 |
| BsnI | GGCC | 1 cut(s) | 213 |
| Bso31I | GGTCTC | 1 cut(s) | 245 |
| BsoBI | CYCGRG | 1 cut(s) | 354 |
| Bsp143I | GATC | 4 cut(s) | 140, 222, 268, 466 |
| BspACI | CCGC | 2 cut(s) | 426, 531 |
| BspANI | GGCC | 1 cut(s) | 213 |
| BspCNI | CTCAG | 1 cut(s) | 404 |
| BspHI | TCATGA | 2 cut(s) | 192, 447 |
| BspLI | GGNNCC | 2 cut(s) | 270, 468 |
| BspPI | GGATC | 5 cut(s) | 230, 263, 276, 461, 474 |
| BspTNI | GGTCTC | 1 cut(s) | 245 |
| BsrDI | GCAATG | 1 cut(s) | 421 |
| BsrI | ACTGG | 1 cut(s) | 153 |
| BssECI | CCNNGG | 1 cut(s) | 474 |
| BssMI | GATC | 4 cut(s) | 140, 222, 268, 466 |
| BssT1I | CCWWGG | 1 cut(s) | 474 |
| Bst2UI | CCWGG | 2 cut(s) | 210, 279 |
| Bst4CI | ACNGT | 5 cut(s) | 22, 109, 179, 256, 323 |
| Bst6I | CTCTTC | 1 cut(s) | 294 |
| BstDEI | CTNAG | 1 cut(s) | 391 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 276 |
| BstHHI | GCGC | 1 cut(s) | 444 |
| BstKTI | GATC | 4 cut(s) | 143, 225, 271, 469 |
| BstMAI | GTCTC | 1 cut(s) | 245 |
| BstMBI | GATC | 4 cut(s) | 140, 222, 268, 466 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 87 |
| BstNI | CCWGG | 2 cut(s) | 210, 279 |
| BstSCI | CCNGG | 2 cut(s) | 208, 277 |
| BstSFI | CTRYAG | 1 cut(s) | 105 |
| BstV1I | GCAGC | 2 cut(s) | 90, 167 |
| BstV2I | GAAGAC | 1 cut(s) | 176 |
| BstX2I | RGATCY | 3 cut(s) | 222, 268, 466 |
| BstYI | RGATCY | 3 cut(s) | 222, 268, 466 |
| BsuRI | GGCC | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 1 cut(s) | 328 |
| CciI | TCATGA | 2 cut(s) | 192, 447 |
| CfoI | GCGC | 1 cut(s) | 444 |
| Csp6I | GTAC | 1 cut(s) | 43 |
| CviAII | CATG | 4 cut(s) | 82, 193, 448, 463 |
| CviJI | RGCY | 7 cut(s) | 17, 29, 68, 90, 158, 213, 353 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 29, 68, 90, 158, 213, 353 |
| CviQI | GTAC | 1 cut(s) | 43 |
| DdeI | CTNAG | 1 cut(s) | 391 |
| DpnI | GATC | 4 cut(s) | 142, 224, 270, 468 |
| DpnII | GATC | 4 cut(s) | 140, 222, 268, 466 |
| DraI | TTTAAA | 1 cut(s) | 330 |
| Eam1104I | CTCTTC | 1 cut(s) | 294 |
| EarI | CTCTTC | 1 cut(s) | 294 |
| Eco130I | CCWWGG | 1 cut(s) | 474 |
| Eco31I | GGTCTC | 1 cut(s) | 245 |
| Eco57I | CTGAAG | 1 cut(s) | 149 |
| Eco88I | CYCGRG | 1 cut(s) | 354 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 276 |
| EcoRII | CCWGG | 2 cut(s) | 208, 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 474 |
| ErhI | CCWWGG | 1 cut(s) | 474 |
| FaeI | CATG | 4 cut(s) | 85, 196, 451, 466 |
| FaqI | GGGAC | 1 cut(s) | 467 |
| FatI | CATG | 4 cut(s) | 81, 192, 447, 462 |
| FauI | CCCGC | 1 cut(s) | 419 |
| FblI | GTMKAC | 1 cut(s) | 294 |
| Fnu4HI | GCNGC | 2 cut(s) | 79, 156 |
| Fsp4HI | GCNGC | 2 cut(s) | 79, 156 |
| GlaI | GCGC | 1 cut(s) | 443 |
| GluI | GCNGC | 2 cut(s) | 79, 156 |
| GsaI | CCCAGC | 1 cut(s) | 414 |
| HaeIII | GGCC | 1 cut(s) | 213 |
| HhaI | GCGC | 1 cut(s) | 444 |
| Hin1II | CATG | 4 cut(s) | 85, 196, 451, 466 |
| Hin6I | GCGC | 1 cut(s) | 442 |
| HinP1I | GCGC | 1 cut(s) | 442 |
| HincII | GTYRAC | 1 cut(s) | 295 |
| HindII | GTYRAC | 1 cut(s) | 295 |
| Hpy166II | GTNNAC | 3 cut(s) | 182, 295, 319 |
| Hpy188I | TCNGA | 1 cut(s) | 168 |
| Hpy188III | TCNNGA | 5 cut(s) | 144, 193, 266, 316, 448 |
| Hpy8I | GTNNAC | 3 cut(s) | 182, 295, 319 |
| Hpy99I | CGWCG | 3 cut(s) | 299, 513, 516 |
| HpyAV | CCTTC | 2 cut(s) | 241, 480 |
| HpyCH4III | ACNGT | 5 cut(s) | 22, 109, 179, 256, 323 |
| HpyCH4IV | ACGT | 2 cut(s) | 364, 514 |
| HpyCH4V | TGCA | 1 cut(s) | 78 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 87 |
| HpyF3I | CTNAG | 1 cut(s) | 391 |
| HpySE526I | ACGT | 2 cut(s) | 364, 514 |
| Hsp92II | CATG | 4 cut(s) | 85, 196, 451, 466 |
| HspAI | GCGC | 1 cut(s) | 442 |
| Kzo9I | GATC | 4 cut(s) | 140, 222, 268, 466 |
| LmnI | GCTCC | 1 cut(s) | 14 |
| Lsp1109I | GCAGC | 2 cut(s) | 90, 167 |
| LweI | GCATC | 2 cut(s) | 186, 429 |
| MaeII | ACGT | 2 cut(s) | 364, 514 |
| MaeIII | GTNAC | 1 cut(s) | 521 |
| MalI | GATC | 4 cut(s) | 142, 224, 270, 468 |
| MboI | GATC | 4 cut(s) | 140, 222, 268, 466 |
| MboII | GAAGA | 3 cut(s) | 17, 181, 311 |
| MflI | RGATCY | 3 cut(s) | 222, 268, 466 |
| MluCI | AATT | 2 cut(s) | 9, 375 |
| MnlI | CCTC | 4 cut(s) | 33, 282, 295, 444 |
| MseI | TTAA | 2 cut(s) | 329, 535 |
| MslI | CAYNNNNRTG | 1 cut(s) | 461 |
| MspA1I | CMGCKG | 1 cut(s) | 531 |
| MspR9I | CCNGG | 2 cut(s) | 210, 279 |
| Mva1269I | GAATGC | 1 cut(s) | 428 |
| MvaI | CCWGG | 2 cut(s) | 210, 279 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 87 |
| NdeII | GATC | 4 cut(s) | 140, 222, 268, 466 |
| NlaIII | CATG | 4 cut(s) | 85, 196, 451, 466 |
| NlaIV | GGNNCC | 2 cut(s) | 270, 468 |
| PagI | TCATGA | 2 cut(s) | 192, 447 |
| PctI | GAATGC | 1 cut(s) | 428 |
| PkrI | GCNGC | 2 cut(s) | 80, 157 |
| Psp6I | CCWGG | 2 cut(s) | 208, 277 |
| PspFI | CCCAGC | 1 cut(s) | 410 |
| PspGI | CCWGG | 2 cut(s) | 208, 277 |
| PspN4I | GGNNCC | 2 cut(s) | 270, 468 |
| PsuI | RGATCY | 3 cut(s) | 222, 268, 466 |
| RsaI | GTAC | 1 cut(s) | 44 |
| RsaNI | GTAC | 1 cut(s) | 43 |
| RseI | CAYNNNNRTG | 1 cut(s) | 461 |
| SalI | GTCGAC | 1 cut(s) | 293 |
| SaqAI | TTAA | 2 cut(s) | 329, 535 |
| SatI | GCNGC | 2 cut(s) | 79, 156 |
| Sau3AI | GATC | 4 cut(s) | 140, 222, 268, 466 |
| ScrFI | CCNGG | 2 cut(s) | 210, 279 |
| SetI | ASST | 6 cut(s) | 19, 44, 160, 283, 367, 517 |
| SfaNI | GCATC | 2 cut(s) | 186, 429 |
| SfcI | CTRYAG | 1 cut(s) | 105 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 461 |
| Sse9I | AATT | 2 cut(s) | 9, 375 |
| SsiI | CCGC | 2 cut(s) | 426, 531 |
| StyD4I | CCNGG | 2 cut(s) | 208, 277 |
| StyI | CCWWGG | 1 cut(s) | 474 |
| TaaI | ACNGT | 5 cut(s) | 22, 109, 179, 256, 323 |
| TaiI | ACGT | 2 cut(s) | 367, 517 |
| TaqI | TCGA | 5 cut(s) | 96, 160, 294, 420, 508 |
| TasI | AATT | 2 cut(s) | 9, 375 |
| Tru1I | TTAA | 2 cut(s) | 329, 535 |
| Tru9I | TTAA | 2 cut(s) | 329, 535 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TseI | GCWGC | 2 cut(s) | 78, 155 |
| TspDTI | ATGAA | 2 cut(s) | 181, 436 |
| TspRI | CASTG | 1 cut(s) | 328 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 276 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 216 |
| XmiI | GTMKAC | 1 cut(s) | 294 |