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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 463 |
| AccI | GTMKAC | 1 cut(s) | 906 |
| AccII | CGCG | 1 cut(s) | 570 |
| AccIII | TCCGGA | 1 cut(s) | 1158 |
| AciI | CCGC | 1 cut(s) | 1038 |
| AclWI | GGATC | 7 cut(s) | 206, 291, 842, 875, 888, 1073, 1086 |
| AcuI | CTGAAG | 2 cut(s) | 609, 761 |
| AcyI | GRCGYC | 1 cut(s) | 464 |
| AfaI | GTAC | 1 cut(s) | 656 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 55, 307, 330, 890, 1088 |
| AflII | CTTAAG | 1 cut(s) | 124 |
| AgsI | TTSAA | 5 cut(s) | 55, 80, 437, 453, 673 |
| AjnI | CCWGG | 4 cut(s) | 22, 820, 889, 1119 |
| AluBI | AGCT | 7 cut(s) | 39, 187, 272, 276, 629, 770, 1127 |
| AluI | AGCT | 7 cut(s) | 39, 187, 272, 276, 629, 770, 1127 |
| Alw26I | GTCTC | 2 cut(s) | 80, 857 |
| AlwI | GGATC | 7 cut(s) | 206, 291, 842, 875, 888, 1073, 1086 |
| Ama87I | CYCGRG | 2 cut(s) | 14, 966 |
| Aor13HI | TCCGGA | 1 cut(s) | 1158 |
| AoxI | GGCC | 3 cut(s) | 10, 120, 823 |
| ApaI | GGGCCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 3 cut(s) | 276, 690, 767 |
| AseI | ATTAAT | 1 cut(s) | 197 |
| AspLEI | GCGC | 3 cut(s) | 466, 570, 1056 |
| AspS9I | GGNCC | 2 cut(s) | 10, 11 |
| AsuHPI | GGTGA | 5 cut(s) | 46, 299, 455, 575, 803 |
| AsuNHI | GCTAGC | 1 cut(s) | 272 |
| AvaI | CYCGRG | 2 cut(s) | 14, 966 |
| AxyI | CCTNAGG | 1 cut(s) | 516 |
| BaeGI | GKGCMC | 1 cut(s) | 14 |
| BamHI | GGATCC | 2 cut(s) | 880, 1078 |
| BanI | GGYRCC | 1 cut(s) | 463 |
| BanII | GRGCYC | 1 cut(s) | 14 |
| BbsI | GAAGAC | 1 cut(s) | 788 |
| BbvI | GCAGC | 3 cut(s) | 263, 702, 779 |
| BccI | CCATC | 3 cut(s) | 91, 124, 475 |
| BceAI | ACGGC | 1 cut(s) | 810 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 493, 527 |
| BciT130I | CCWGG | 4 cut(s) | 24, 822, 891, 1121 |
| BcoDI | GTCTC | 2 cut(s) | 80, 857 |
| BfaI | CTAG | 2 cut(s) | 138, 273 |
| BfmI | CTRYAG | 1 cut(s) | 717 |
| BfoI | RGCGCY | 1 cut(s) | 467 |
| BfrI | CTTAAG | 1 cut(s) | 124 |
| BisI | GCNGC | 3 cut(s) | 277, 691, 768 |
| BlsI | GCNGC | 3 cut(s) | 278, 692, 769 |
| Bme1390I | CCNGG | 4 cut(s) | 24, 822, 891, 1121 |
| BmeT110I | CYCGRG | 2 cut(s) | 14, 966 |
| BmgT120I | GGNCC | 2 cut(s) | 10, 11 |
| BmiI | GGNNCC | 5 cut(s) | 12, 13, 465, 882, 1080 |
| BmrFI | CCNGG | 4 cut(s) | 24, 822, 891, 1121 |
| BmsI | GCATC | 3 cut(s) | 28, 798, 1041 |
| BmtI | GCTAGC | 1 cut(s) | 276 |
| BpiI | GAAGAC | 1 cut(s) | 788 |
| BpmI | CTGGAG | 1 cut(s) | 303 |
| Bpu10I | CCTNAGC | 1 cut(s) | 105 |
| BsaHI | GRCGYC | 1 cut(s) | 464 |
| BsaI | GGTCTC | 1 cut(s) | 857 |
| BsaJI | CCNNGG | 2 cut(s) | 1086, 1110 |
| BsaWI | WCCGGW | 1 cut(s) | 1158 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 276, 306, 618, 648 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 55, 307, 330, 890, 1088 |
| Bse1I | ACTGG | 1 cut(s) | 765 |
| Bse21I | CCTNAGG | 1 cut(s) | 516 |
| Bse3DI | GCAATG | 1 cut(s) | 1033 |
| BseAI | TCCGGA | 1 cut(s) | 1158 |
| BseBI | CCWGG | 4 cut(s) | 24, 822, 891, 1121 |
| BseDI | CCNNGG | 2 cut(s) | 1086, 1110 |
| BseGI | GGATG | 3 cut(s) | 19, 135, 319 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 55, 307, 330, 890, 1088 |
| BseMI | GCAATG | 1 cut(s) | 1033 |
| BseMII | CTCAG | 4 cut(s) | 153, 170, 507, 1017 |
| BseNI | ACTGG | 1 cut(s) | 765 |
| BseSI | GKGCMC | 1 cut(s) | 14 |
| BseXI | GCAGC | 3 cut(s) | 263, 702, 779 |
| BseYI | CCCAGC | 1 cut(s) | 1022 |
| BsgI | GTGCAG | 1 cut(s) | 709 |
| Bsh1236I | CGCG | 1 cut(s) | 570 |
| Bsh1285I | CGRYCG | 1 cut(s) | 49 |
| BshFI | GGCC | 3 cut(s) | 12, 122, 825 |
| BshNI | GGYRCC | 1 cut(s) | 463 |
| BsiEI | CGRYCG | 1 cut(s) | 49 |
| BsiHKCI | CYCGRG | 2 cut(s) | 14, 966 |
| BsiSI | CCGG | 1 cut(s) | 1159 |
| BslFI | GGGAC | 1 cut(s) | 1079 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 55, 307, 330, 890, 1088 |
| BsmAI | GTCTC | 2 cut(s) | 80, 857 |
| BsmFI | GGGAC | 1 cut(s) | 1079 |
| BsmI | GAATGC | 1 cut(s) | 1040 |
| BsnI | GGCC | 3 cut(s) | 12, 122, 825 |
| Bso31I | GGTCTC | 1 cut(s) | 857 |
| BsoBI | CYCGRG | 2 cut(s) | 14, 966 |
| Bsp120I | GGGCCC | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp13I | TCCGGA | 1 cut(s) | 1158 |
| Bsp143I | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| BspACI | CCGC | 1 cut(s) | 1038 |
| BspANI | GGCC | 3 cut(s) | 12, 122, 825 |
| BspCNI | CTCAG | 4 cut(s) | 154, 171, 508, 1016 |
| BspEI | TCCGGA | 1 cut(s) | 1158 |
| BspFNI | CGCG | 1 cut(s) | 570 |
| BspHI | TCATGA | 2 cut(s) | 804, 1059 |
| BspLI | GGNNCC | 5 cut(s) | 12, 13, 465, 882, 1080 |
| BspOI | GCTAGC | 1 cut(s) | 276 |
| BspPI | GGATC | 7 cut(s) | 206, 291, 842, 875, 888, 1073, 1086 |
| BspT107I | GGYRCC | 1 cut(s) | 463 |
| BspTI | CTTAAG | 1 cut(s) | 124 |
| BspTNI | GGTCTC | 1 cut(s) | 857 |
| BsrDI | GCAATG | 1 cut(s) | 1033 |
| BsrI | ACTGG | 1 cut(s) | 765 |
| BssECI | CCNNGG | 2 cut(s) | 1086, 1110 |
| BssMI | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| BssNI | GRCGYC | 1 cut(s) | 464 |
| BssT1I | CCWWGG | 2 cut(s) | 1086, 1110 |
| Bst2UI | CCWGG | 4 cut(s) | 24, 822, 891, 1121 |
| Bst4CI | ACNGT | 7 cut(s) | 50, 62, 634, 721, 791, 868, 935 |
| Bst6I | CTCTTC | 5 cut(s) | 78, 111, 345, 372, 906 |
| BstACI | GRCGYC | 1 cut(s) | 464 |
| BstAFI | CTTAAG | 1 cut(s) | 124 |
| BstC8I | GCNNGC | 3 cut(s) | 221, 274, 610 |
| BstDEI | CTNAG | 5 cut(s) | 105, 162, 179, 516, 1003 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 888 |
| BstF5I | GGATG | 3 cut(s) | 19, 135, 319 |
| BstFNI | CGCG | 1 cut(s) | 570 |
| BstH2I | RGCGCY | 1 cut(s) | 467 |
| BstHHI | GCGC | 3 cut(s) | 466, 570, 1056 |
| BstKTI | GATC | 6 cut(s) | 214, 299, 755, 837, 883, 1081 |
| BstMAI | GTCTC | 2 cut(s) | 80, 857 |
| BstMBI | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| BstMCI | CGRYCG | 1 cut(s) | 49 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 699 |
| BstNI | CCWGG | 4 cut(s) | 24, 822, 891, 1121 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BstSCI | CCNGG | 4 cut(s) | 22, 820, 889, 1119 |
| BstSFI | CTRYAG | 1 cut(s) | 717 |
| BstSLI | GKGCMC | 1 cut(s) | 14 |
| BstUI | CGCG | 1 cut(s) | 570 |
| BstV1I | GCAGC | 3 cut(s) | 263, 702, 779 |
| BstV2I | GAAGAC | 1 cut(s) | 788 |
| BstX2I | RGATCY | 4 cut(s) | 296, 834, 880, 1078 |
| BstYI | RGATCY | 4 cut(s) | 296, 834, 880, 1078 |
| Bsu36I | CCTNAGG | 1 cut(s) | 516 |
| BsuRI | GGCC | 3 cut(s) | 12, 122, 825 |
| BtsCI | GGATG | 3 cut(s) | 19, 135, 319 |
| BtsIMutI | CAGTG | 1 cut(s) | 940 |
| Cac8I | GCNNGC | 3 cut(s) | 221, 274, 610 |
| CciI | TCATGA | 2 cut(s) | 804, 1059 |
| CfoI | GCGC | 3 cut(s) | 466, 570, 1056 |
| Cfr13I | GGNCC | 2 cut(s) | 10, 11 |
| Csp6I | GTAC | 1 cut(s) | 655 |
| CviAII | CATG | 7 cut(s) | 220, 419, 613, 694, 805, 1060, 1075 |
| CviQI | GTAC | 1 cut(s) | 655 |
| DdeI | CTNAG | 5 cut(s) | 105, 162, 179, 516, 1003 |
| DinI | GGCGCC | 1 cut(s) | 465 |
| DpnI | GATC | 6 cut(s) | 213, 298, 754, 836, 882, 1080 |
| DpnII | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| DraI | TTTAAA | 2 cut(s) | 477, 942 |
| Eam1104I | CTCTTC | 5 cut(s) | 78, 111, 345, 372, 906 |
| EarI | CTCTTC | 5 cut(s) | 78, 111, 345, 372, 906 |
| Eco130I | CCWWGG | 2 cut(s) | 1086, 1110 |
| Eco147I | AGGCCT | 1 cut(s) | 122 |
| Eco24I | GRGCYC | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 1 cut(s) | 857 |
| Eco57I | CTGAAG | 2 cut(s) | 609, 761 |
| Eco81I | CCTNAGG | 1 cut(s) | 516 |
| Eco88I | CYCGRG | 2 cut(s) | 14, 966 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 888 |
| EcoO109I | RGGNCCY | 1 cut(s) | 11 |
| EcoRII | CCWGG | 4 cut(s) | 22, 820, 889, 1119 |
| EcoT14I | CCWWGG | 2 cut(s) | 1086, 1110 |
| EcoT38I | GRGCYC | 1 cut(s) | 14 |
| EgeI | GGCGCC | 1 cut(s) | 465 |
| EheI | GGCGCC | 1 cut(s) | 465 |
| ErhI | CCWWGG | 2 cut(s) | 1086, 1110 |
| FaeI | CATG | 7 cut(s) | 223, 422, 616, 697, 808, 1063, 1078 |
| FaqI | GGGAC | 1 cut(s) | 1079 |
| FatI | CATG | 7 cut(s) | 219, 418, 612, 693, 804, 1059, 1074 |
| FauI | CCCGC | 1 cut(s) | 1031 |
| FblI | GTMKAC | 1 cut(s) | 906 |
| Fnu4HI | GCNGC | 3 cut(s) | 277, 691, 768 |
| FokI | GGATG | 3 cut(s) | 6, 142, 326 |
| FriOI | GRGCYC | 1 cut(s) | 14 |
| Fsp4HI | GCNGC | 3 cut(s) | 277, 691, 768 |
| FspBI | CTAG | 2 cut(s) | 138, 273 |
| GlaI | GCGC | 3 cut(s) | 465, 569, 1055 |
| GluI | GCNGC | 3 cut(s) | 277, 691, 768 |
| GsaI | CCCAGC | 1 cut(s) | 1026 |
| GsuI | CTGGAG | 1 cut(s) | 303 |
| HaeII | RGCGCY | 1 cut(s) | 467 |
| HaeIII | GGCC | 3 cut(s) | 12, 122, 825 |
| HapII | CCGG | 1 cut(s) | 1159 |
| HhaI | GCGC | 3 cut(s) | 466, 570, 1056 |
| Hin1I | GRCGYC | 1 cut(s) | 464 |
| Hin1II | CATG | 7 cut(s) | 223, 422, 616, 697, 808, 1063, 1078 |
| Hin6I | GCGC | 3 cut(s) | 464, 568, 1054 |
| HinP1I | GCGC | 3 cut(s) | 464, 568, 1054 |
| HincII | GTYRAC | 1 cut(s) | 907 |
| HindII | GTYRAC | 1 cut(s) | 907 |
| HindIII | AAGCTT | 1 cut(s) | 1125 |
| HinfI | GANTC | 1 cut(s) | 181 |
| HpaII | CCGG | 1 cut(s) | 1159 |
| HphI | GGTGA | 5 cut(s) | 46, 299, 455, 575, 803 |
| Hpy166II | GTNNAC | 3 cut(s) | 794, 907, 931 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 780 |
| Hpy8I | GTNNAC | 3 cut(s) | 794, 907, 931 |
| Hpy99I | CGWCG | 1 cut(s) | 911 |
| HpyAV | CCTTC | 9 cut(s) | 24, 49, 86, 349, 376, 586, 593, 853, 1092 |
| HpyCH4III | ACNGT | 7 cut(s) | 50, 62, 634, 721, 791, 868, 935 |
| HpyCH4IV | ACGT | 1 cut(s) | 976 |
| HpyCH4V | TGCA | 2 cut(s) | 608, 690 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 699 |
| HpyF3I | CTNAG | 5 cut(s) | 105, 162, 179, 516, 1003 |
| HpySE526I | ACGT | 1 cut(s) | 976 |
| Hsp92I | GRCGYC | 1 cut(s) | 464 |
| Hsp92II | CATG | 7 cut(s) | 223, 422, 616, 697, 808, 1063, 1078 |
| HspAI | GCGC | 3 cut(s) | 464, 568, 1054 |
| KasI | GGCGCC | 1 cut(s) | 463 |
| Kpn2I | TCCGGA | 1 cut(s) | 1158 |
| Kzo9I | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| LmnI | GCTCC | 2 cut(s) | 169, 626 |
| Lsp1109I | GCAGC | 3 cut(s) | 263, 702, 779 |
| LweI | GCATC | 3 cut(s) | 28, 798, 1041 |
| MaeI | CTAG | 2 cut(s) | 138, 273 |
| MaeII | ACGT | 1 cut(s) | 976 |
| MalI | GATC | 6 cut(s) | 213, 298, 754, 836, 882, 1080 |
| MboI | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| MfeI | CAATTG | 2 cut(s) | 149, 540 |
| MflI | RGATCY | 4 cut(s) | 296, 834, 880, 1078 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| Mly113I | GGCGCC | 1 cut(s) | 464 |
| MlyI | GAGTC | 1 cut(s) | 190 |
| MroI | TCCGGA | 1 cut(s) | 1158 |
| MseI | TTAA | 7 cut(s) | 65, 125, 197, 225, 476, 941, 1194 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1073 |
| MspCI | CTTAAG | 1 cut(s) | 124 |
| MspI | CCGG | 1 cut(s) | 1159 |
| MspR9I | CCNGG | 4 cut(s) | 24, 822, 891, 1121 |
| MunI | CAATTG | 2 cut(s) | 149, 540 |
| Mva1269I | GAATGC | 1 cut(s) | 1040 |
| MvaI | CCWGG | 4 cut(s) | 24, 822, 891, 1121 |
| MvnI | CGCG | 1 cut(s) | 570 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 699 |
| NarI | GGCGCC | 1 cut(s) | 464 |
| NdeII | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| NheI | GCTAGC | 1 cut(s) | 272 |
| NlaIII | CATG | 7 cut(s) | 223, 422, 616, 697, 808, 1063, 1078 |
| NlaIV | GGNNCC | 5 cut(s) | 12, 13, 465, 882, 1080 |
| NspI | RCATGY | 1 cut(s) | 223 |
| PaeI | GCATGC | 1 cut(s) | 223 |
| PagI | TCATGA | 2 cut(s) | 804, 1059 |
| PceI | AGGCCT | 1 cut(s) | 122 |
| PctI | GAATGC | 1 cut(s) | 1040 |
| PkrI | GCNGC | 3 cut(s) | 278, 692, 769 |
| PleI | GAGTC | 1 cut(s) | 189 |
| PluTI | GGCGCC | 1 cut(s) | 467 |
| PpsI | GAGTC | 1 cut(s) | 189 |
| PshBI | ATTAAT | 1 cut(s) | 197 |
| Psp6I | CCWGG | 4 cut(s) | 22, 820, 889, 1119 |
| PspFI | CCCAGC | 1 cut(s) | 1022 |
| PspGI | CCWGG | 4 cut(s) | 22, 820, 889, 1119 |
| PspN4I | GGNNCC | 5 cut(s) | 12, 13, 465, 882, 1080 |
| PspOMI | GGGCCC | 1 cut(s) | 10 |
| PspPI | GGNCC | 2 cut(s) | 10, 11 |
| PsuI | RGATCY | 4 cut(s) | 296, 834, 880, 1078 |
| RsaI | GTAC | 1 cut(s) | 656 |
| RsaNI | GTAC | 1 cut(s) | 655 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1073 |
| SalI | GTCGAC | 1 cut(s) | 905 |
| SaqAI | TTAA | 7 cut(s) | 65, 125, 197, 225, 476, 941, 1194 |
| SatI | GCNGC | 3 cut(s) | 277, 691, 768 |
| Sau3AI | GATC | 6 cut(s) | 211, 296, 752, 834, 880, 1078 |
| Sau96I | GGNCC | 2 cut(s) | 10, 11 |
| SchI | GAGTC | 1 cut(s) | 190 |
| ScrFI | CCNGG | 4 cut(s) | 24, 822, 891, 1121 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfaNI | GCATC | 3 cut(s) | 28, 798, 1041 |
| SfcI | CTRYAG | 1 cut(s) | 717 |
| SfoI | GGCGCC | 1 cut(s) | 465 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1073 |
| SmlI | CTYRAG | 1 cut(s) | 124 |
| SmoI | CTYRAG | 1 cut(s) | 124 |
| SphI | GCATGC | 1 cut(s) | 223 |
| SseBI | AGGCCT | 1 cut(s) | 122 |
| SsiI | CCGC | 1 cut(s) | 1038 |
| SspDI | GGCGCC | 1 cut(s) | 463 |
| SspMI | CTAG | 2 cut(s) | 138, 273 |
| StuI | AGGCCT | 1 cut(s) | 122 |
| StyD4I | CCNGG | 4 cut(s) | 22, 820, 889, 1119 |
| StyI | CCWWGG | 2 cut(s) | 1086, 1110 |
| TaaI | ACNGT | 7 cut(s) | 50, 62, 634, 721, 791, 868, 935 |
| TaiI | ACGT | 1 cut(s) | 979 |
| TaqI | TCGA | 4 cut(s) | 708, 772, 906, 1032 |
| Tru1I | TTAA | 7 cut(s) | 65, 125, 197, 225, 476, 941, 1194 |
| Tru9I | TTAA | 7 cut(s) | 65, 125, 197, 225, 476, 941, 1194 |
| TscAI | CASTG | 1 cut(s) | 940 |
| TseI | GCWGC | 3 cut(s) | 276, 690, 767 |
| TspDTI | ATGAA | 8 cut(s) | 363, 390, 423, 793, 1048, 1119, 1167, 1179 |
| TspRI | CASTG | 1 cut(s) | 940 |
| Vha464I | CTTAAG | 1 cut(s) | 124 |
| VspI | ATTAAT | 1 cut(s) | 197 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 888 |
| XceI | RCATGY | 1 cut(s) | 223 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 828 |
| XmiI | GTMKAC | 1 cut(s) | 906 |
| XspI | CTAG | 2 cut(s) | 138, 273 |