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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 310 |
| Acc65I | GGTACC | 1 cut(s) | 103 |
| AccB1I | GGYRCC | 2 cut(s) | 103, 520 |
| AccII | CGCG | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 371, 825 |
| AclWI | GGATC | 1 cut(s) | 654 |
| AcuI | CTGAAG | 3 cut(s) | 342, 765, 783 |
| AfaI | GTAC | 2 cut(s) | 105, 602 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 316, 360 |
| AflII | CTTAAG | 1 cut(s) | 494 |
| AgsI | TTSAA | 3 cut(s) | 272, 580, 730 |
| AjnI | CCWGG | 1 cut(s) | 811 |
| AluBI | AGCT | 2 cut(s) | 221, 386 |
| AluI | AGCT | 2 cut(s) | 221, 386 |
| AlwI | GGATC | 1 cut(s) | 654 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 686 |
| Asp718I | GGTACC | 1 cut(s) | 103 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 95, 128 |
| BanI | GGYRCC | 2 cut(s) | 103, 520 |
| BccI | CCATC | 4 cut(s) | 193, 473, 499, 976 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 133, 167 |
| BciT130I | CCWGG | 1 cut(s) | 813 |
| BciVI | GTATCC | 1 cut(s) | 819 |
| BfaI | CTAG | 5 cut(s) | 12, 161, 210, 396, 926 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BfrI | CTTAAG | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 1 cut(s) | 310 |
| BfuI | GTATCC | 1 cut(s) | 819 |
| BglII | AGATCT | 1 cut(s) | 212 |
| Bme1390I | CCNGG | 1 cut(s) | 813 |
| BmiI | GGNNCC | 3 cut(s) | 105, 183, 522 |
| BmrFI | CCNGG | 1 cut(s) | 813 |
| BmsI | GCATC | 2 cut(s) | 394, 499 |
| BpmI | CTGGAG | 1 cut(s) | 630 |
| Bpu10I | CCTNAGC | 1 cut(s) | 954 |
| Bsa29I | ATCGAT | 1 cut(s) | 658 |
| BsaBI | GATNNNNATC | 2 cut(s) | 27, 654 |
| BsaJI | CCNNGG | 1 cut(s) | 447 |
| BsaWI | WCCGGW | 1 cut(s) | 416 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 316, 360 |
| Bse1I | ACTGG | 1 cut(s) | 602 |
| Bse3DI | GCAATG | 1 cut(s) | 948 |
| Bse8I | GATNNNNATC | 2 cut(s) | 27, 654 |
| BseBI | CCWGG | 1 cut(s) | 813 |
| BseCI | ATCGAT | 1 cut(s) | 658 |
| BseDI | CCNNGG | 1 cut(s) | 447 |
| BseGI | GGATG | 3 cut(s) | 409, 510, 514 |
| BseJI | GATNNNNATC | 2 cut(s) | 27, 654 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 316, 360 |
| BseMI | GCAATG | 1 cut(s) | 948 |
| BseMII | CTCAG | 3 cut(s) | 404, 795, 968 |
| BseNI | ACTGG | 1 cut(s) | 602 |
| BsgI | GTGCAG | 1 cut(s) | 260 |
| Bsh1236I | CGCG | 1 cut(s) | 373 |
| Bsh1285I | CGRYCG | 1 cut(s) | 421 |
| BshNI | GGYRCC | 2 cut(s) | 103, 520 |
| BshVI | ATCGAT | 1 cut(s) | 658 |
| BsiEI | CGRYCG | 1 cut(s) | 421 |
| BsiSI | CCGG | 1 cut(s) | 417 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 316, 360 |
| Bsp143I | GATC | 2 cut(s) | 212, 659 |
| BspACI | CCGC | 2 cut(s) | 371, 825 |
| BspCNI | CTCAG | 3 cut(s) | 403, 796, 967 |
| BspDI | ATCGAT | 1 cut(s) | 658 |
| BspFNI | CGCG | 1 cut(s) | 373 |
| BspLI | GGNNCC | 3 cut(s) | 105, 183, 522 |
| BspMI | ACCTGC | 1 cut(s) | 310 |
| BspPI | GGATC | 1 cut(s) | 654 |
| BspT107I | GGYRCC | 2 cut(s) | 103, 520 |
| BspTI | CTTAAG | 1 cut(s) | 494 |
| BsrDI | GCAATG | 1 cut(s) | 948 |
| BsrI | ACTGG | 1 cut(s) | 602 |
| BssECI | CCNNGG | 1 cut(s) | 447 |
| BssMI | GATC | 2 cut(s) | 212, 659 |
| Bst2UI | CCWGG | 1 cut(s) | 813 |
| Bst4CI | ACNGT | 2 cut(s) | 108, 265 |
| Bst6I | CTCTTC | 2 cut(s) | 725, 927 |
| BstAFI | CTTAAG | 1 cut(s) | 494 |
| BstC8I | GCNNGC | 1 cut(s) | 559 |
| BstDEI | CTNAG | 4 cut(s) | 359, 390, 804, 954 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 358 |
| BstF5I | GGATG | 3 cut(s) | 409, 510, 514 |
| BstFNI | CGCG | 1 cut(s) | 373 |
| BstKTI | GATC | 2 cut(s) | 215, 662 |
| BstMBI | GATC | 2 cut(s) | 212, 659 |
| BstMCI | CGRYCG | 1 cut(s) | 421 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 247, 347 |
| BstNI | CCWGG | 1 cut(s) | 813 |
| BstSCI | CCNGG | 1 cut(s) | 811 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstUI | CGCG | 1 cut(s) | 373 |
| BstX2I | RGATCY | 1 cut(s) | 212 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 531 |
| BstYI | RGATCY | 1 cut(s) | 212 |
| Bsu15I | ATCGAT | 1 cut(s) | 658 |
| BsuI | GTATCC | 1 cut(s) | 819 |
| BsuTUI | ATCGAT | 1 cut(s) | 658 |
| BtsCI | GGATG | 3 cut(s) | 409, 510, 514 |
| BtsI | GCAGTG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 2 cut(s) | 243, 474 |
| BveI | ACCTGC | 1 cut(s) | 310 |
| Cac8I | GCNNGC | 1 cut(s) | 559 |
| ClaI | ATCGAT | 1 cut(s) | 658 |
| CseI | GACGC | 1 cut(s) | 396 |
| Csp6I | GTAC | 2 cut(s) | 104, 601 |
| CviAII | CATG | 1 cut(s) | 178 |
| CviQI | GTAC | 2 cut(s) | 104, 601 |
| DdeI | CTNAG | 4 cut(s) | 359, 390, 804, 954 |
| DpnI | GATC | 2 cut(s) | 214, 661 |
| DpnII | GATC | 2 cut(s) | 212, 659 |
| DraI | TTTAAA | 2 cut(s) | 115, 636 |
| Eam1104I | CTCTTC | 2 cut(s) | 725, 927 |
| EarI | CTCTTC | 2 cut(s) | 725, 927 |
| Eco57I | CTGAAG | 3 cut(s) | 342, 765, 783 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 358 |
| EcoRII | CCWGG | 1 cut(s) | 811 |
| FaeI | CATG | 1 cut(s) | 181 |
| FatI | CATG | 1 cut(s) | 177 |
| FokI | GGATG | 3 cut(s) | 416, 517, 521 |
| FspBI | CTAG | 5 cut(s) | 12, 161, 210, 396, 926 |
| GsuI | CTGGAG | 1 cut(s) | 630 |
| HapII | CCGG | 1 cut(s) | 417 |
| HgaI | GACGC | 1 cut(s) | 396 |
| Hin1II | CATG | 1 cut(s) | 181 |
| HinfI | GANTC | 2 cut(s) | 452, 620 |
| HpaII | CCGG | 1 cut(s) | 417 |
| Hpy166II | GTNNAC | 3 cut(s) | 85, 168, 299 |
| Hpy188I | TCNGA | 5 cut(s) | 121, 448, 457, 745, 783 |
| Hpy188III | TCNNGA | 6 cut(s) | 580, 617, 626, 647, 803, 956 |
| Hpy8I | GTNNAC | 3 cut(s) | 85, 168, 299 |
| HpyAV | CCTTC | 4 cut(s) | 310, 740, 758, 858 |
| HpyCH4III | ACNGT | 2 cut(s) | 108, 265 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 17, 241, 431 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 247, 347 |
| HpyF3I | CTNAG | 4 cut(s) | 359, 390, 804, 954 |
| Hsp92II | CATG | 1 cut(s) | 181 |
| KpnI | GGTACC | 1 cut(s) | 107 |
| Kzo9I | GATC | 2 cut(s) | 212, 659 |
| LmnI | GCTCC | 2 cut(s) | 187, 985 |
| LweI | GCATC | 2 cut(s) | 394, 499 |
| MaeI | CTAG | 5 cut(s) | 12, 161, 210, 396, 926 |
| MalI | GATC | 2 cut(s) | 214, 661 |
| MboI | GATC | 2 cut(s) | 212, 659 |
| MboII | GAAGA | 5 cut(s) | 547, 742, 905, 931, 944 |
| MflI | RGATCY | 1 cut(s) | 212 |
| MluCI | AATT | 2 cut(s) | 539, 713 |
| MmeI | TCCRAC | 1 cut(s) | 957 |
| MnlI | CCTC | 9 cut(s) | 73, 364, 421, 442, 480, 494, 654, 661, 726 |
| MroXI | GAANNNNTTC | 1 cut(s) | 686 |
| MseI | TTAA | 7 cut(s) | 114, 147, 224, 495, 635, 717, 915 |
| MspCI | CTTAAG | 1 cut(s) | 494 |
| MspI | CCGG | 1 cut(s) | 417 |
| MspR9I | CCNGG | 1 cut(s) | 813 |
| MvaI | CCWGG | 1 cut(s) | 813 |
| MvnI | CGCG | 1 cut(s) | 373 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 247, 347 |
| NdeII | GATC | 2 cut(s) | 212, 659 |
| NlaIII | CATG | 1 cut(s) | 181 |
| NlaIV | GGNNCC | 3 cut(s) | 105, 183, 522 |
| PdmI | GAANNNNTTC | 1 cut(s) | 686 |
| PfeI | GAWTC | 2 cut(s) | 452, 620 |
| Psp6I | CCWGG | 1 cut(s) | 811 |
| PspGI | CCWGG | 1 cut(s) | 811 |
| PspN4I | GGNNCC | 3 cut(s) | 105, 183, 522 |
| PsuI | RGATCY | 1 cut(s) | 212 |
| RsaI | GTAC | 2 cut(s) | 105, 602 |
| RsaNI | GTAC | 2 cut(s) | 104, 601 |
| SaqAI | TTAA | 7 cut(s) | 114, 147, 224, 495, 635, 717, 915 |
| Sau3AI | GATC | 2 cut(s) | 212, 659 |
| ScrFI | CCNGG | 1 cut(s) | 813 |
| SetI | ASST | 9 cut(s) | 84, 223, 280, 304, 356, 388, 491, 672, 871 |
| SfaNI | GCATC | 2 cut(s) | 394, 499 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| SmlI | CTYRAG | 1 cut(s) | 494 |
| SmoI | CTYRAG | 1 cut(s) | 494 |
| Sse9I | AATT | 2 cut(s) | 539, 713 |
| SsiI | CCGC | 2 cut(s) | 371, 825 |
| SspMI | CTAG | 5 cut(s) | 12, 161, 210, 396, 926 |
| StyD4I | CCNGG | 1 cut(s) | 811 |
| TaaI | ACNGT | 2 cut(s) | 108, 265 |
| TaqI | TCGA | 3 cut(s) | 153, 200, 658 |
| TasI | AATT | 2 cut(s) | 539, 713 |
| TfiI | GAWTC | 2 cut(s) | 452, 620 |
| Tru1I | TTAA | 7 cut(s) | 114, 147, 224, 495, 635, 717, 915 |
| Tru9I | TTAA | 7 cut(s) | 114, 147, 224, 495, 635, 717, 915 |
| TscAI | CASTG | 2 cut(s) | 243, 481 |
| TspDTI | ATGAA | 4 cut(s) | 171, 260, 690, 851 |
| TspRI | CASTG | 2 cut(s) | 243, 481 |
| Vha464I | CTTAAG | 1 cut(s) | 494 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 358 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 973 |
| XmnI | GAANNNNTTC | 1 cut(s) | 686 |
| XspI | CTAG | 5 cut(s) | 12, 161, 210, 396, 926 |