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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 267 |
| AccB1I | GGYRCC | 2 cut(s) | 267, 424 |
| AclWI | GGATC | 2 cut(s) | 317, 330 |
| AcsI | RAATTY | 1 cut(s) | 165 |
| AcuI | CTGAAG | 1 cut(s) | 181 |
| AfaI | GTAC | 2 cut(s) | 269, 384 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 277 |
| AgsI | TTSAA | 3 cut(s) | 69, 135, 360 |
| AjnI | CCWGG | 1 cut(s) | 437 |
| Alw26I | GTCTC | 1 cut(s) | 343 |
| AlwI | GGATC | 2 cut(s) | 317, 330 |
| Ama87I | CYCGRG | 1 cut(s) | 180 |
| ApoI | RAATTY | 1 cut(s) | 165 |
| Asp718I | GGTACC | 1 cut(s) | 267 |
| AspLEI | GCGC | 1 cut(s) | 242 |
| AspS9I | GGNCC | 2 cut(s) | 76, 280 |
| AvaI | CYCGRG | 1 cut(s) | 180 |
| AvaII | GGWCC | 2 cut(s) | 76, 280 |
| BamHI | GGATCC | 1 cut(s) | 322 |
| BanI | GGYRCC | 2 cut(s) | 267, 424 |
| BccI | CCATC | 2 cut(s) | 56, 139 |
| BciT130I | CCWGG | 1 cut(s) | 439 |
| BcoDI | GTCTC | 1 cut(s) | 343 |
| BfaI | CTAG | 2 cut(s) | 81, 155 |
| BlpI | GCTNAGC | 1 cut(s) | 236 |
| Bme1390I | CCNGG | 1 cut(s) | 439 |
| Bme18I | GGWCC | 2 cut(s) | 76, 280 |
| BmeT110I | CYCGRG | 1 cut(s) | 180 |
| BmgT120I | GGNCC | 2 cut(s) | 76, 280 |
| BmiI | GGNNCC | 4 cut(s) | 78, 269, 324, 426 |
| BmrFI | CCNGG | 1 cut(s) | 439 |
| BmsI | GCATC | 1 cut(s) | 381 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 236 |
| BpuEI | CTTGAG | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 1 cut(s) | 120 |
| BsaWI | WCCGGW | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 277 |
| Bse3DI | GCAATG | 1 cut(s) | 236 |
| BseBI | CCWGG | 1 cut(s) | 439 |
| BseDI | CCNNGG | 1 cut(s) | 120 |
| BseGI | GGATG | 2 cut(s) | 10, 396 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BseMI | GCAATG | 1 cut(s) | 236 |
| BseMII | CTCAG | 1 cut(s) | 250 |
| BsgI | GTGCAG | 1 cut(s) | 312 |
| BshNI | GGYRCC | 2 cut(s) | 267, 424 |
| BsiHKCI | CYCGRG | 1 cut(s) | 180 |
| BsiSI | CCGG | 1 cut(s) | 35 |
| BslFI | GGGAC | 1 cut(s) | 62 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BsmAI | GTCTC | 1 cut(s) | 343 |
| BsmFI | GGGAC | 1 cut(s) | 62 |
| BsoBI | CYCGRG | 1 cut(s) | 180 |
| Bsp143I | GATC | 2 cut(s) | 322, 409 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 236 |
| Bsp19I | CCATGG | 1 cut(s) | 120 |
| BspCNI | CTCAG | 1 cut(s) | 249 |
| BspHI | TCATGA | 1 cut(s) | 51 |
| BspLI | GGNNCC | 4 cut(s) | 78, 269, 324, 426 |
| BspPI | GGATC | 2 cut(s) | 317, 330 |
| BspT107I | GGYRCC | 2 cut(s) | 267, 424 |
| BsrDI | GCAATG | 1 cut(s) | 236 |
| BssECI | CCNNGG | 1 cut(s) | 120 |
| BssMI | GATC | 2 cut(s) | 322, 409 |
| BssT1I | CCWWGG | 1 cut(s) | 120 |
| Bst2UI | CCWGG | 1 cut(s) | 439 |
| BstDEI | CTNAG | 1 cut(s) | 236 |
| BstDSI | CCRYGG | 1 cut(s) | 120 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 275 |
| BstF5I | GGATG | 2 cut(s) | 10, 396 |
| BstHHI | GCGC | 1 cut(s) | 242 |
| BstKTI | GATC | 2 cut(s) | 325, 412 |
| BstMAI | GTCTC | 1 cut(s) | 343 |
| BstMBI | GATC | 2 cut(s) | 322, 409 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 246 |
| BstNI | CCWGG | 1 cut(s) | 439 |
| BstSCI | CCNGG | 1 cut(s) | 437 |
| BstX2I | RGATCY | 1 cut(s) | 322 |
| BstYI | RGATCY | 1 cut(s) | 322 |
| BtgI | CCRYGG | 1 cut(s) | 120 |
| BtsCI | GGATG | 2 cut(s) | 10, 396 |
| BtsIMutI | CAGTG | 1 cut(s) | 140 |
| CciI | TCATGA | 1 cut(s) | 51 |
| CfoI | GCGC | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 2 cut(s) | 76, 280 |
| Csp6I | GTAC | 2 cut(s) | 268, 383 |
| CviAII | CATG | 5 cut(s) | 52, 59, 121, 262, 298 |
| CviJI | RGCY | 3 cut(s) | 161, 235, 257 |
| CviKI_1 | RGCY | 3 cut(s) | 161, 235, 257 |
| CviQI | GTAC | 2 cut(s) | 268, 383 |
| DdeI | CTNAG | 1 cut(s) | 236 |
| DpnI | GATC | 2 cut(s) | 324, 411 |
| DpnII | GATC | 2 cut(s) | 322, 409 |
| Eco130I | CCWWGG | 1 cut(s) | 120 |
| Eco47I | GGWCC | 2 cut(s) | 76, 280 |
| Eco57I | CTGAAG | 1 cut(s) | 181 |
| Eco88I | CYCGRG | 1 cut(s) | 180 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 275 |
| EcoO109I | RGGNCCY | 1 cut(s) | 280 |
| EcoRII | CCWGG | 1 cut(s) | 437 |
| EcoT14I | CCWWGG | 1 cut(s) | 120 |
| ErhI | CCWWGG | 1 cut(s) | 120 |
| FaeI | CATG | 5 cut(s) | 55, 62, 124, 265, 301 |
| FaqI | GGGAC | 1 cut(s) | 62 |
| FatI | CATG | 5 cut(s) | 51, 58, 120, 261, 297 |
| FokI | GGATG | 2 cut(s) | 17, 403 |
| FspBI | CTAG | 2 cut(s) | 81, 155 |
| GlaI | GCGC | 1 cut(s) | 241 |
| HapII | CCGG | 1 cut(s) | 35 |
| HhaI | GCGC | 1 cut(s) | 242 |
| Hin1II | CATG | 5 cut(s) | 55, 62, 124, 265, 301 |
| Hin6I | GCGC | 1 cut(s) | 240 |
| HinP1I | GCGC | 1 cut(s) | 240 |
| HinfI | GANTC | 1 cut(s) | 356 |
| HpaII | CCGG | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 1 cut(s) | 373 |
| Hpy188I | TCNGA | 5 cut(s) | 173, 200, 295, 355, 409 |
| Hpy188III | TCNNGA | 3 cut(s) | 52, 155, 182 |
| Hpy8I | GTNNAC | 1 cut(s) | 373 |
| HpyCH4V | TGCA | 5 cut(s) | 110, 229, 249, 329, 394 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 246 |
| HpyF3I | CTNAG | 1 cut(s) | 236 |
| Hsp92II | CATG | 5 cut(s) | 55, 62, 124, 265, 301 |
| HspAI | GCGC | 1 cut(s) | 240 |
| KpnI | GGTACC | 1 cut(s) | 271 |
| Kzo9I | GATC | 2 cut(s) | 322, 409 |
| LmnI | GCTCC | 1 cut(s) | 37 |
| LpnPI | CCDG | 3 cut(s) | 48, 339, 424 |
| LweI | GCATC | 1 cut(s) | 381 |
| MaeI | CTAG | 2 cut(s) | 81, 155 |
| MalI | GATC | 2 cut(s) | 324, 411 |
| MboI | GATC | 2 cut(s) | 322, 409 |
| MboII | GAAGA | 1 cut(s) | 187 |
| MflI | RGATCY | 1 cut(s) | 322 |
| MluCI | AATT | 5 cut(s) | 105, 130, 165, 376, 433 |
| MnlI | CCTC | 3 cut(s) | 151, 189, 258 |
| MseI | TTAA | 1 cut(s) | 218 |
| MslI | CAYNNNNRTG | 1 cut(s) | 50 |
| MspI | CCGG | 1 cut(s) | 35 |
| MspR9I | CCNGG | 1 cut(s) | 439 |
| MvaI | CCWGG | 1 cut(s) | 439 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 246 |
| NcoI | CCATGG | 1 cut(s) | 120 |
| NdeII | GATC | 2 cut(s) | 322, 409 |
| NlaIII | CATG | 5 cut(s) | 55, 62, 124, 265, 301 |
| NlaIV | GGNNCC | 4 cut(s) | 78, 269, 324, 426 |
| PaeR7I | CTCGAG | 1 cut(s) | 180 |
| PagI | TCATGA | 1 cut(s) | 51 |
| PfeI | GAWTC | 1 cut(s) | 356 |
| PpuMI | RGGWCCY | 1 cut(s) | 280 |
| Psp5II | RGGWCCY | 1 cut(s) | 280 |
| Psp6I | CCWGG | 1 cut(s) | 437 |
| PspGI | CCWGG | 1 cut(s) | 437 |
| PspN4I | GGNNCC | 4 cut(s) | 78, 269, 324, 426 |
| PspPI | GGNCC | 2 cut(s) | 76, 280 |
| PspPPI | RGGWCCY | 1 cut(s) | 280 |
| PsuI | RGATCY | 1 cut(s) | 322 |
| RsaI | GTAC | 2 cut(s) | 269, 384 |
| RsaNI | GTAC | 2 cut(s) | 268, 383 |
| RseI | CAYNNNNRTG | 1 cut(s) | 50 |
| SaqAI | TTAA | 1 cut(s) | 218 |
| Sau3AI | GATC | 2 cut(s) | 322, 409 |
| Sau96I | GGNCC | 2 cut(s) | 76, 280 |
| ScrFI | CCNGG | 1 cut(s) | 439 |
| SetI | ASST | 4 cut(s) | 269, 273, 282, 443 |
| SfaNI | GCATC | 1 cut(s) | 381 |
| Sfr274I | CTCGAG | 1 cut(s) | 180 |
| SinI | GGWCC | 2 cut(s) | 76, 280 |
| SlaI | CTCGAG | 1 cut(s) | 180 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 50 |
| SmlI | CTYRAG | 2 cut(s) | 180, 284 |
| SmoI | CTYRAG | 2 cut(s) | 180, 284 |
| Sse9I | AATT | 5 cut(s) | 105, 130, 165, 376, 433 |
| SspMI | CTAG | 2 cut(s) | 81, 155 |
| StyD4I | CCNGG | 1 cut(s) | 437 |
| StyI | CCWWGG | 1 cut(s) | 120 |
| TaqI | TCGA | 1 cut(s) | 181 |
| TasI | AATT | 5 cut(s) | 105, 130, 165, 376, 433 |
| TatI | WGTACW | 1 cut(s) | 382 |
| TfiI | GAWTC | 1 cut(s) | 356 |
| Tru1I | TTAA | 1 cut(s) | 218 |
| Tru9I | TTAA | 1 cut(s) | 218 |
| TscAI | CASTG | 1 cut(s) | 147 |
| TspDTI | ATGAA | 2 cut(s) | 40, 68 |
| TspGWI | ACGGA | 1 cut(s) | 403 |
| TspRI | CASTG | 1 cut(s) | 147 |
| VpaK11BI | GGWCC | 2 cut(s) | 76, 280 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 275 |
| XapI | RAATTY | 1 cut(s) | 165 |
| XbaI | TCTAGA | 1 cut(s) | 154 |
| XhoI | CTCGAG | 1 cut(s) | 180 |
| XspI | CTAG | 2 cut(s) | 81, 155 |