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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 214 |
| AccI | GTMKAC | 1 cut(s) | 114 |
| AciI | CCGC | 4 cut(s) | 214, 263, 396, 619 |
| AcoI | YGGCCR | 1 cut(s) | 505 |
| AcsI | RAATTY | 1 cut(s) | 89 |
| AcuI | CTGAAG | 2 cut(s) | 170, 666 |
| AfaI | GTAC | 1 cut(s) | 705 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AgsI | TTSAA | 8 cut(s) | 94, 296, 390, 410, 461, 556, 566, 606 |
| AjnI | CCWGG | 1 cut(s) | 529 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 639, 671 |
| AluBI | AGCT | 4 cut(s) | 71, 380, 384, 452 |
| AluI | AGCT | 4 cut(s) | 71, 380, 384, 452 |
| Alw26I | GTCTC | 2 cut(s) | 102, 668 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 74, 677 |
| AoxI | GGCC | 2 cut(s) | 487, 505 |
| ApeKI | GCWGC | 3 cut(s) | 71, 74, 689 |
| ApoI | RAATTY | 1 cut(s) | 89 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 477, 509 |
| AsuHPI | GGTGA | 2 cut(s) | 547, 589 |
| AsuNHI | GCTAGC | 1 cut(s) | 380 |
| BalI | TGGCCA | 1 cut(s) | 507 |
| BbvI | GCAGC | 3 cut(s) | 58, 61, 701 |
| BccI | CCATC | 2 cut(s) | 75, 365 |
| BciT130I | CCWGG | 1 cut(s) | 531 |
| BciVI | GTATCC | 2 cut(s) | 165, 256 |
| BcoDI | GTCTC | 2 cut(s) | 102, 668 |
| BfaI | CTAG | 2 cut(s) | 347, 381 |
| BfuI | GTATCC | 2 cut(s) | 165, 256 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 312 |
| BisI | GCNGC | 3 cut(s) | 72, 75, 690 |
| BlsI | GCNGC | 3 cut(s) | 73, 76, 691 |
| Bme1390I | CCNGG | 1 cut(s) | 531 |
| BmrFI | CCNGG | 1 cut(s) | 531 |
| BmrI | ACTGGG | 1 cut(s) | 480 |
| BmsI | GCATC | 2 cut(s) | 712, 761 |
| BmtI | GCTAGC | 1 cut(s) | 384 |
| BmuI | ACTGGG | 1 cut(s) | 480 |
| BsaJI | CCNNGG | 2 cut(s) | 530, 693 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 15, 45 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse118I | RCCGGY | 3 cut(s) | 223, 311, 326 |
| Bse1I | ACTGG | 3 cut(s) | 338, 475, 717 |
| Bse3DI | GCAATG | 1 cut(s) | 576 |
| BseBI | CCWGG | 1 cut(s) | 531 |
| BseDI | CCNNGG | 2 cut(s) | 530, 693 |
| BseGI | GGATG | 1 cut(s) | 357 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseMI | GCAATG | 1 cut(s) | 576 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseNI | ACTGG | 3 cut(s) | 338, 475, 717 |
| BseRI | GAGGAG | 1 cut(s) | 628 |
| BseXI | GCAGC | 3 cut(s) | 58, 61, 701 |
| BshFI | GGCC | 2 cut(s) | 489, 507 |
| BsiSI | CCGG | 3 cut(s) | 224, 312, 327 |
| BslFI | GGGAC | 1 cut(s) | 245 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 2 cut(s) | 102, 668 |
| BsmFI | GGGAC | 1 cut(s) | 245 |
| BsnI | GGCC | 2 cut(s) | 489, 507 |
| Bsp143I | GATC | 2 cut(s) | 187, 400 |
| BspACI | CCGC | 4 cut(s) | 214, 263, 396, 619 |
| BspANI | GGCC | 2 cut(s) | 489, 507 |
| BspCNI | CTCAG | 1 cut(s) | 202 |
| BspOI | GCTAGC | 1 cut(s) | 384 |
| BsrBI | CCGCTC | 1 cut(s) | 214 |
| BsrDI | GCAATG | 1 cut(s) | 576 |
| BsrFI | RCCGGY | 3 cut(s) | 223, 311, 326 |
| BsrI | ACTGG | 3 cut(s) | 338, 475, 717 |
| BssAI | RCCGGY | 3 cut(s) | 223, 311, 326 |
| BssECI | CCNNGG | 2 cut(s) | 530, 693 |
| BssMI | GATC | 2 cut(s) | 187, 400 |
| BssNAI | GTATAC | 1 cut(s) | 115 |
| Bst1107I | GTATAC | 1 cut(s) | 115 |
| Bst2UI | CCWGG | 1 cut(s) | 531 |
| Bst4CI | ACNGT | 1 cut(s) | 259 |
| BstC8I | GCNNGC | 5 cut(s) | 225, 313, 378, 382, 435 |
| BstDEI | CTNAG | 2 cut(s) | 210, 219 |
| BstF5I | GGATG | 1 cut(s) | 357 |
| BstKTI | GATC | 2 cut(s) | 190, 403 |
| BstMAI | GTCTC | 2 cut(s) | 102, 668 |
| BstMBI | GATC | 2 cut(s) | 187, 400 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 220, 312, 443 |
| BstNI | CCWGG | 1 cut(s) | 531 |
| BstSCI | CCNGG | 1 cut(s) | 529 |
| BstV1I | GCAGC | 3 cut(s) | 58, 61, 701 |
| BstZ17I | GTATAC | 1 cut(s) | 115 |
| BsuI | GTATCC | 2 cut(s) | 165, 256 |
| BsuRI | GGCC | 2 cut(s) | 489, 507 |
| BtsCI | GGATG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 2 cut(s) | 468, 724 |
| Cac8I | GCNNGC | 5 cut(s) | 225, 313, 378, 382, 435 |
| CaiI | CAGNNNCTG | 2 cut(s) | 74, 677 |
| Cfr10I | RCCGGY | 3 cut(s) | 223, 311, 326 |
| CseI | GACGC | 1 cut(s) | 205 |
| Csp6I | GTAC | 1 cut(s) | 704 |
| CviAII | CATG | 1 cut(s) | 422 |
| CviQI | GTAC | 1 cut(s) | 704 |
| DdeI | CTNAG | 2 cut(s) | 210, 219 |
| DpnI | GATC | 2 cut(s) | 189, 402 |
| DpnII | GATC | 2 cut(s) | 187, 400 |
| EaeI | YGGCCR | 1 cut(s) | 505 |
| Eco57I | CTGAAG | 2 cut(s) | 170, 666 |
| EcoRI | GAATTC | 1 cut(s) | 89 |
| EcoRII | CCWGG | 1 cut(s) | 529 |
| EcoT22I | ATGCAT | 1 cut(s) | 423 |
| FaeI | CATG | 1 cut(s) | 425 |
| FaiI | YATR | 4 cut(s) | 7, 115, 419, 423 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 530, 562, 690, 722 |
| FaqI | GGGAC | 1 cut(s) | 245 |
| FatI | CATG | 1 cut(s) | 421 |
| FauI | CCCGC | 1 cut(s) | 270 |
| FblI | GTMKAC | 1 cut(s) | 114 |
| Fnu4HI | GCNGC | 3 cut(s) | 72, 75, 690 |
| FokI | GGATG | 1 cut(s) | 344 |
| Fsp4HI | GCNGC | 3 cut(s) | 72, 75, 690 |
| FspBI | CTAG | 2 cut(s) | 347, 381 |
| GluI | GCNGC | 3 cut(s) | 72, 75, 690 |
| HaeIII | GGCC | 2 cut(s) | 489, 507 |
| HapII | CCGG | 3 cut(s) | 224, 312, 327 |
| HgaI | GACGC | 1 cut(s) | 205 |
| Hin1II | CATG | 1 cut(s) | 425 |
| HincII | GTYRAC | 1 cut(s) | 543 |
| HindII | GTYRAC | 1 cut(s) | 543 |
| HpaII | CCGG | 3 cut(s) | 224, 312, 327 |
| HphI | GGTGA | 2 cut(s) | 547, 589 |
| Hpy166II | GTNNAC | 4 cut(s) | 115, 543, 580, 636 |
| Hpy188I | TCNGA | 2 cut(s) | 105, 711 |
| Hpy188III | TCNNGA | 3 cut(s) | 233, 563, 662 |
| Hpy8I | GTNNAC | 4 cut(s) | 115, 543, 580, 636 |
| HpyAV | CCTTC | 2 cut(s) | 290, 509 |
| HpyCH4III | ACNGT | 1 cut(s) | 259 |
| HpyCH4IV | ACGT | 1 cut(s) | 274 |
| HpyCH4V | TGCA | 7 cut(s) | 64, 77, 185, 421, 433, 446, 684 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 220, 312, 443 |
| HpyF3I | CTNAG | 2 cut(s) | 210, 219 |
| HpySE526I | ACGT | 1 cut(s) | 274 |
| Hsp92II | CATG | 1 cut(s) | 425 |
| KroI | GCCGGC | 2 cut(s) | 223, 311 |
| KroNI | GCCGGC | 2 cut(s) | 225, 313 |
| Kzo9I | GATC | 2 cut(s) | 187, 400 |
| LmnI | GCTCC | 1 cut(s) | 23 |
| Lsp1109I | GCAGC | 3 cut(s) | 58, 61, 701 |
| LweI | GCATC | 2 cut(s) | 712, 761 |
| MaeI | CTAG | 2 cut(s) | 347, 381 |
| MaeII | ACGT | 1 cut(s) | 274 |
| MaeIII | GTNAC | 2 cut(s) | 205, 466 |
| MalI | GATC | 2 cut(s) | 189, 402 |
| MbiI | CCGCTC | 1 cut(s) | 214 |
| MboI | GATC | 2 cut(s) | 187, 400 |
| MboII | GAAGA | 4 cut(s) | 473, 487, 659, 710 |
| MlsI | TGGCCA | 1 cut(s) | 507 |
| MluCI | AATT | 5 cut(s) | 89, 200, 456, 549, 735 |
| MluNI | TGGCCA | 1 cut(s) | 507 |
| MmeI | TCCRAC | 1 cut(s) | 322 |
| MnlI | CCTC | 5 cut(s) | 168, 568, 606, 609, 688 |
| Mox20I | TGGCCA | 1 cut(s) | 507 |
| Mph1103I | ATGCAT | 1 cut(s) | 423 |
| MroNI | GCCGGC | 2 cut(s) | 223, 311 |
| MscI | TGGCCA | 1 cut(s) | 507 |
| MseI | TTAA | 2 cut(s) | 548, 738 |
| Msp20I | TGGCCA | 1 cut(s) | 507 |
| MspA1I | CMGCKG | 2 cut(s) | 71, 398 |
| MspI | CCGG | 3 cut(s) | 224, 312, 327 |
| MspR9I | CCNGG | 1 cut(s) | 531 |
| MvaI | CCWGG | 1 cut(s) | 531 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 220, 312, 443 |
| NaeI | GCCGGC | 2 cut(s) | 225, 313 |
| NdeII | GATC | 2 cut(s) | 187, 400 |
| NgoMIV | GCCGGC | 2 cut(s) | 223, 311 |
| NheI | GCTAGC | 1 cut(s) | 380 |
| NlaIII | CATG | 1 cut(s) | 425 |
| NmeAIII | GCCGAG | 3 cut(s) | 332, 347, 718 |
| NmuCI | GTSAC | 2 cut(s) | 205, 466 |
| NsiI | ATGCAT | 1 cut(s) | 423 |
| PdiI | GCCGGC | 2 cut(s) | 225, 313 |
| PkrI | GCNGC | 3 cut(s) | 73, 76, 691 |
| Psp6I | CCWGG | 1 cut(s) | 529 |
| PspGI | CCWGG | 1 cut(s) | 529 |
| PstNI | CAGNNNCTG | 2 cut(s) | 74, 677 |
| PvuII | CAGCTG | 1 cut(s) | 71 |
| RsaI | GTAC | 1 cut(s) | 705 |
| RsaNI | GTAC | 1 cut(s) | 704 |
| SaqAI | TTAA | 2 cut(s) | 548, 738 |
| SatI | GCNGC | 3 cut(s) | 72, 75, 690 |
| Sau3AI | GATC | 2 cut(s) | 187, 400 |
| ScrFI | CCNGG | 1 cut(s) | 531 |
| SfaNI | GCATC | 2 cut(s) | 712, 761 |
| Sse9I | AATT | 5 cut(s) | 89, 200, 456, 549, 735 |
| SsiI | CCGC | 4 cut(s) | 214, 263, 396, 619 |
| SspI | AATATT | 1 cut(s) | 760 |
| SspMI | CTAG | 2 cut(s) | 347, 381 |
| StyD4I | CCNGG | 1 cut(s) | 529 |
| TaaI | ACNGT | 1 cut(s) | 259 |
| TaiI | ACGT | 1 cut(s) | 277 |
| TaqI | TCGA | 1 cut(s) | 495 |
| TasI | AATT | 5 cut(s) | 89, 200, 456, 549, 735 |
| TatI | WGTACW | 1 cut(s) | 703 |
| Tru1I | TTAA | 2 cut(s) | 548, 738 |
| Tru9I | TTAA | 2 cut(s) | 548, 738 |
| TscAI | CASTG | 2 cut(s) | 475, 724 |
| TseFI | GTSAC | 2 cut(s) | 205, 466 |
| TseI | GCWGC | 3 cut(s) | 71, 74, 689 |
| Tsp45I | GTSAC | 2 cut(s) | 205, 466 |
| TspDTI | ATGAA | 3 cut(s) | 57, 166, 252 |
| TspGWI | ACGGA | 1 cut(s) | 597 |
| TspRI | CASTG | 2 cut(s) | 475, 724 |
| XapI | RAATTY | 1 cut(s) | 89 |
| XmiI | GTMKAC | 1 cut(s) | 114 |
| XspI | CTAG | 2 cut(s) | 347, 381 |
| Zsp2I | ATGCAT | 1 cut(s) | 423 |