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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 649 |
| AccII | CGCG | 1 cut(s) | 756 |
| AccIII | TCCGGA | 1 cut(s) | 1344 |
| AciI | CCGC | 2 cut(s) | 66, 1224 |
| AclWI | GGATC | 8 cut(s) | 302, 387, 946, 1028, 1061, 1074, 1259, 1272 |
| AcoI | YGGCCR | 1 cut(s) | 67 |
| AcuI | CTGAAG | 2 cut(s) | 795, 947 |
| AcyI | GRCGYC | 1 cut(s) | 650 |
| AfaI | GTAC | 2 cut(s) | 842, 904 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 426, 921, 1076, 1378 |
| AgsI | TTSAA | 2 cut(s) | 639, 859 |
| AjnI | CCWGG | 3 cut(s) | 612, 898, 1006 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 191, 223 |
| AluBI | AGCT | 5 cut(s) | 283, 372, 815, 932, 956 |
| AluI | AGCT | 5 cut(s) | 283, 372, 815, 932, 956 |
| AlwI | GGATC | 8 cut(s) | 302, 387, 946, 1028, 1061, 1074, 1259, 1272 |
| Aor13HI | TCCGGA | 1 cut(s) | 1344 |
| AoxI | GGCC | 3 cut(s) | 67, 1009, 1159 |
| ApeKI | GCWGC | 3 cut(s) | 372, 876, 953 |
| AseI | ATTAAT | 1 cut(s) | 293 |
| AspLEI | GCGC | 4 cut(s) | 170, 652, 1242, 1315 |
| AsuC2I | CCSGG | 1 cut(s) | 1077 |
| AsuHPI | GGTGA | 3 cut(s) | 38, 395, 989 |
| AxyI | CCTNAGG | 1 cut(s) | 702 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 750, 783 |
| BamHI | GGATCC | 2 cut(s) | 1066, 1264 |
| BanI | GGYRCC | 1 cut(s) | 649 |
| BauI | CACGAG | 1 cut(s) | 695 |
| BbsI | GAAGAC | 1 cut(s) | 974 |
| BbvI | GCAGC | 3 cut(s) | 359, 888, 965 |
| BccI | CCATC | 3 cut(s) | 220, 661, 968 |
| BceAI | ACGGC | 2 cut(s) | 996, 1146 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 679, 713, 1093, 1127 |
| BciT130I | CCWGG | 3 cut(s) | 614, 900, 1008 |
| BcnI | CCSGG | 1 cut(s) | 1077 |
| BfaI | CTAG | 2 cut(s) | 234, 749 |
| BfoI | RGCGCY | 2 cut(s) | 653, 1316 |
| BisI | GCNGC | 4 cut(s) | 67, 373, 877, 954 |
| BlsI | GCNGC | 4 cut(s) | 68, 374, 878, 955 |
| Bme1390I | CCNGG | 4 cut(s) | 614, 900, 1008, 1077 |
| BmiI | GGNNCC | 3 cut(s) | 651, 1068, 1266 |
| BmrFI | CCNGG | 4 cut(s) | 614, 900, 1008, 1077 |
| BmsI | GCATC | 3 cut(s) | 169, 984, 1227 |
| BpiI | GAAGAC | 1 cut(s) | 974 |
| BpmI | CTGGAG | 1 cut(s) | 399 |
| BpuMI | CCSGG | 1 cut(s) | 1077 |
| BsaHI | GRCGYC | 1 cut(s) | 650 |
| BsaJI | CCNNGG | 3 cut(s) | 898, 1272, 1296 |
| BsaWI | WCCGGW | 1 cut(s) | 1344 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 372, 402, 804, 834 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 426, 921, 1076, 1378 |
| Bse21I | CCTNAGG | 1 cut(s) | 702 |
| BseAI | TCCGGA | 1 cut(s) | 1344 |
| BseBI | CCWGG | 3 cut(s) | 614, 900, 1008 |
| BseDI | CCNNGG | 3 cut(s) | 898, 1272, 1296 |
| BseGI | GGATG | 2 cut(s) | 231, 415 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 426, 921, 1076, 1378 |
| BseMII | CTCAG | 3 cut(s) | 249, 266, 716 |
| BseXI | GCAGC | 3 cut(s) | 359, 888, 965 |
| BseYI | CCCAGC | 1 cut(s) | 1208 |
| BsgI | GTGCAG | 1 cut(s) | 895 |
| Bsh1236I | CGCG | 1 cut(s) | 756 |
| BshFI | GGCC | 3 cut(s) | 69, 1011, 1161 |
| BshNI | GGYRCC | 1 cut(s) | 649 |
| BsiSI | CCGG | 2 cut(s) | 1077, 1345 |
| BslFI | GGGAC | 3 cut(s) | 327, 937, 1265 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 426, 921, 1076, 1378 |
| BsmFI | GGGAC | 3 cut(s) | 327, 937, 1265 |
| BsmI | GAATGC | 1 cut(s) | 1226 |
| BsnI | GGCC | 3 cut(s) | 69, 1011, 1161 |
| Bsp13I | TCCGGA | 1 cut(s) | 1344 |
| Bsp143I | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| BspACI | CCGC | 2 cut(s) | 66, 1224 |
| BspANI | GGCC | 3 cut(s) | 69, 1011, 1161 |
| BspCNI | CTCAG | 3 cut(s) | 250, 267, 715 |
| BspEI | TCCGGA | 1 cut(s) | 1344 |
| BspFNI | CGCG | 1 cut(s) | 756 |
| BspHI | TCATGA | 2 cut(s) | 990, 1245 |
| BspLI | GGNNCC | 3 cut(s) | 651, 1068, 1266 |
| BspPI | GGATC | 8 cut(s) | 302, 387, 946, 1028, 1061, 1074, 1259, 1272 |
| BspT107I | GGYRCC | 1 cut(s) | 649 |
| BssECI | CCNNGG | 3 cut(s) | 898, 1272, 1296 |
| BssMI | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| BssNI | GRCGYC | 1 cut(s) | 650 |
| BssSI | CACGAG | 1 cut(s) | 695 |
| BssT1I | CCWWGG | 2 cut(s) | 1272, 1296 |
| Bst2BI | CACGAG | 1 cut(s) | 695 |
| Bst2UI | CCWGG | 3 cut(s) | 614, 900, 1008 |
| Bst4CI | ACNGT | 5 cut(s) | 140, 820, 907, 1054, 1121 |
| Bst6I | CTCTTC | 5 cut(s) | 465, 492, 519, 546, 1092 |
| BstACI | GRCGYC | 1 cut(s) | 650 |
| BstC8I | GCNNGC | 4 cut(s) | 317, 370, 796, 1159 |
| BstDEI | CTNAG | 4 cut(s) | 122, 258, 275, 702 |
| BstF5I | GGATG | 2 cut(s) | 231, 415 |
| BstFNI | CGCG | 1 cut(s) | 756 |
| BstH2I | RGCGCY | 2 cut(s) | 653, 1316 |
| BstHHI | GCGC | 4 cut(s) | 170, 652, 1242, 1315 |
| BstKTI | GATC | 7 cut(s) | 310, 395, 853, 941, 1023, 1069, 1267 |
| BstMBI | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 885 |
| BstNI | CCWGG | 3 cut(s) | 614, 900, 1008 |
| BstNSI | RCATGY | 1 cut(s) | 319 |
| BstSCI | CCNGG | 4 cut(s) | 612, 898, 1006, 1075 |
| BstUI | CGCG | 1 cut(s) | 756 |
| BstV1I | GCAGC | 3 cut(s) | 359, 888, 965 |
| BstV2I | GAAGAC | 1 cut(s) | 974 |
| BstX2I | RGATCY | 4 cut(s) | 392, 1020, 1066, 1264 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 247 |
| BstYI | RGATCY | 4 cut(s) | 392, 1020, 1066, 1264 |
| Bsu36I | CCTNAGG | 1 cut(s) | 702 |
| BsuRI | GGCC | 3 cut(s) | 69, 1011, 1161 |
| BtsCI | GGATG | 2 cut(s) | 231, 415 |
| BtsI | GCAGTG | 1 cut(s) | 1219 |
| BtsIMutI | CAGTG | 2 cut(s) | 1126, 1219 |
| Cac8I | GCNNGC | 4 cut(s) | 317, 370, 796, 1159 |
| CciI | TCATGA | 2 cut(s) | 990, 1245 |
| CfoI | GCGC | 4 cut(s) | 170, 652, 1242, 1315 |
| CsiI | ACCWGGT | 1 cut(s) | 612 |
| Csp6I | GTAC | 2 cut(s) | 841, 903 |
| CviAII | CATG | 9 cut(s) | 316, 605, 799, 848, 880, 991, 1246, 1261, 1378 |
| CviQI | GTAC | 2 cut(s) | 841, 903 |
| DdeI | CTNAG | 4 cut(s) | 122, 258, 275, 702 |
| DinI | GGCGCC | 1 cut(s) | 651 |
| DpnI | GATC | 7 cut(s) | 309, 394, 852, 940, 1022, 1068, 1266 |
| DpnII | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| DraI | TTTAAA | 1 cut(s) | 663 |
| EaeI | YGGCCR | 1 cut(s) | 67 |
| Eam1104I | CTCTTC | 5 cut(s) | 465, 492, 519, 546, 1092 |
| EarI | CTCTTC | 5 cut(s) | 465, 492, 519, 546, 1092 |
| Eco130I | CCWWGG | 2 cut(s) | 1272, 1296 |
| Eco57I | CTGAAG | 2 cut(s) | 795, 947 |
| Eco81I | CCTNAGG | 1 cut(s) | 702 |
| EcoRII | CCWGG | 3 cut(s) | 612, 898, 1006 |
| EcoT14I | CCWWGG | 2 cut(s) | 1272, 1296 |
| EgeI | GGCGCC | 1 cut(s) | 651 |
| EheI | GGCGCC | 1 cut(s) | 651 |
| ErhI | CCWWGG | 2 cut(s) | 1272, 1296 |
| FaeI | CATG | 9 cut(s) | 319, 608, 802, 851, 883, 994, 1249, 1264, 1381 |
| FaqI | GGGAC | 3 cut(s) | 327, 937, 1265 |
| FatI | CATG | 9 cut(s) | 315, 604, 798, 847, 879, 990, 1245, 1260, 1377 |
| FauI | CCCGC | 1 cut(s) | 1217 |
| Fnu4HI | GCNGC | 4 cut(s) | 67, 373, 877, 954 |
| FokI | GGATG | 2 cut(s) | 238, 422 |
| Fsp4HI | GCNGC | 4 cut(s) | 67, 373, 877, 954 |
| FspBI | CTAG | 2 cut(s) | 234, 749 |
| GlaI | GCGC | 4 cut(s) | 169, 651, 1241, 1314 |
| GluI | GCNGC | 4 cut(s) | 67, 373, 877, 954 |
| GsaI | CCCAGC | 1 cut(s) | 1212 |
| GsuI | CTGGAG | 1 cut(s) | 399 |
| HaeII | RGCGCY | 2 cut(s) | 653, 1316 |
| HaeIII | GGCC | 3 cut(s) | 69, 1011, 1161 |
| HapII | CCGG | 2 cut(s) | 1077, 1345 |
| HhaI | GCGC | 4 cut(s) | 170, 652, 1242, 1315 |
| Hin1I | GRCGYC | 1 cut(s) | 650 |
| Hin1II | CATG | 9 cut(s) | 319, 608, 802, 851, 883, 994, 1249, 1264, 1381 |
| Hin6I | GCGC | 4 cut(s) | 168, 650, 1240, 1313 |
| HinP1I | GCGC | 4 cut(s) | 168, 650, 1240, 1313 |
| HinfI | GANTC | 1 cut(s) | 277 |
| HpaII | CCGG | 2 cut(s) | 1077, 1345 |
| HphI | GGTGA | 3 cut(s) | 38, 395, 989 |
| Hpy166II | GTNNAC | 2 cut(s) | 980, 1117 |
| Hpy188I | TCNGA | 5 cut(s) | 145, 198, 206, 361, 966 |
| Hpy8I | GTNNAC | 2 cut(s) | 980, 1117 |
| HpyAV | CCTTC | 4 cut(s) | 449, 772, 1278, 1382 |
| HpyCH4III | ACNGT | 5 cut(s) | 140, 820, 907, 1054, 1121 |
| HpyCH4V | TGCA | 4 cut(s) | 118, 160, 794, 876 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 885 |
| HpyF3I | CTNAG | 4 cut(s) | 122, 258, 275, 702 |
| Hsp92I | GRCGYC | 1 cut(s) | 650 |
| Hsp92II | CATG | 9 cut(s) | 319, 608, 802, 851, 883, 994, 1249, 1264, 1381 |
| HspAI | GCGC | 4 cut(s) | 168, 650, 1240, 1313 |
| KasI | GGCGCC | 1 cut(s) | 649 |
| Kpn2I | TCCGGA | 1 cut(s) | 1344 |
| Kzo9I | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| LmnI | GCTCC | 2 cut(s) | 265, 812 |
| Lsp1109I | GCAGC | 3 cut(s) | 359, 888, 965 |
| LweI | GCATC | 3 cut(s) | 169, 984, 1227 |
| MabI | ACCWGGT | 1 cut(s) | 612 |
| MaeI | CTAG | 2 cut(s) | 234, 749 |
| MalI | GATC | 7 cut(s) | 309, 394, 852, 940, 1022, 1068, 1266 |
| MboI | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| MfeI | CAATTG | 3 cut(s) | 245, 726, 1332 |
| MflI | RGATCY | 4 cut(s) | 392, 1020, 1066, 1264 |
| Mly113I | GGCGCC | 1 cut(s) | 650 |
| MlyI | GAGTC | 1 cut(s) | 286 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| MroI | TCCGGA | 1 cut(s) | 1344 |
| MseI | TTAA | 5 cut(s) | 221, 293, 321, 621, 662 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1259 |
| MspI | CCGG | 2 cut(s) | 1077, 1345 |
| MspR9I | CCNGG | 4 cut(s) | 614, 900, 1008, 1077 |
| MunI | CAATTG | 3 cut(s) | 245, 726, 1332 |
| Mva1269I | GAATGC | 1 cut(s) | 1226 |
| MvaI | CCWGG | 3 cut(s) | 614, 900, 1008 |
| MvnI | CGCG | 1 cut(s) | 756 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 885 |
| NarI | GGCGCC | 1 cut(s) | 650 |
| NciI | CCSGG | 1 cut(s) | 1077 |
| NdeII | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| NlaIII | CATG | 9 cut(s) | 319, 608, 802, 851, 883, 994, 1249, 1264, 1381 |
| NlaIV | GGNNCC | 3 cut(s) | 651, 1068, 1266 |
| NspI | RCATGY | 1 cut(s) | 319 |
| PaeI | GCATGC | 1 cut(s) | 319 |
| PagI | TCATGA | 2 cut(s) | 990, 1245 |
| PctI | GAATGC | 1 cut(s) | 1226 |
| PkrI | GCNGC | 4 cut(s) | 68, 374, 878, 955 |
| PleI | GAGTC | 1 cut(s) | 285 |
| PluTI | GGCGCC | 1 cut(s) | 653 |
| PpsI | GAGTC | 1 cut(s) | 285 |
| PshBI | ATTAAT | 1 cut(s) | 293 |
| Psp6I | CCWGG | 3 cut(s) | 612, 898, 1006 |
| PspFI | CCCAGC | 1 cut(s) | 1208 |
| PspGI | CCWGG | 3 cut(s) | 612, 898, 1006 |
| PspN4I | GGNNCC | 3 cut(s) | 651, 1068, 1266 |
| PsuI | RGATCY | 4 cut(s) | 392, 1020, 1066, 1264 |
| RsaI | GTAC | 2 cut(s) | 842, 904 |
| RsaNI | GTAC | 2 cut(s) | 841, 903 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1259 |
| SaqAI | TTAA | 5 cut(s) | 221, 293, 321, 621, 662 |
| SatI | GCNGC | 4 cut(s) | 67, 373, 877, 954 |
| Sau3AI | GATC | 7 cut(s) | 307, 392, 850, 938, 1020, 1066, 1264 |
| SchI | GAGTC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 4 cut(s) | 614, 900, 1008, 1077 |
| SexAI | ACCWGGT | 1 cut(s) | 612 |
| SfaNI | GCATC | 3 cut(s) | 169, 984, 1227 |
| SfoI | GGCGCC | 1 cut(s) | 651 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1259 |
| SphI | GCATGC | 1 cut(s) | 319 |
| SsiI | CCGC | 2 cut(s) | 66, 1224 |
| SspDI | GGCGCC | 1 cut(s) | 649 |
| SspMI | CTAG | 2 cut(s) | 234, 749 |
| StyD4I | CCNGG | 4 cut(s) | 612, 898, 1006, 1075 |
| StyI | CCWWGG | 2 cut(s) | 1272, 1296 |
| TaaI | ACNGT | 5 cut(s) | 140, 820, 907, 1054, 1121 |
| TaqI | TCGA | 4 cut(s) | 894, 958, 1092, 1218 |
| TauI | GCSGC | 1 cut(s) | 69 |
| Tru1I | TTAA | 5 cut(s) | 221, 293, 321, 621, 662 |
| Tru9I | TTAA | 5 cut(s) | 221, 293, 321, 621, 662 |
| TscAI | CASTG | 2 cut(s) | 1126, 1219 |
| TseI | GCWGC | 3 cut(s) | 372, 876, 953 |
| TspGWI | ACGGA | 1 cut(s) | 951 |
| TspRI | CASTG | 2 cut(s) | 1126, 1219 |
| VspI | ATTAAT | 1 cut(s) | 293 |
| XbaI | TCTAGA | 1 cut(s) | 748 |
| XceI | RCATGY | 1 cut(s) | 319 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1014 |
| XspI | CTAG | 2 cut(s) | 234, 749 |