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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 404 |
| AccB1I | GGYRCC | 1 cut(s) | 541 |
| AccBSI | CCGCTC | 1 cut(s) | 599 |
| AccIII | TCCGGA | 1 cut(s) | 259 |
| AciI | CCGC | 2 cut(s) | 275, 599 |
| AclWI | GGATC | 2 cut(s) | 251, 586 |
| AcoI | YGGCCR | 1 cut(s) | 506 |
| AcuI | CTGAAG | 2 cut(s) | 228, 552 |
| AcyI | GRCGYC | 1 cut(s) | 483 |
| AgsI | TTSAA | 3 cut(s) | 158, 341, 622 |
| AjnI | CCWGG | 1 cut(s) | 503 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 104, 136 |
| AleI | CACNNNNGTG | 1 cut(s) | 62 |
| AluBI | AGCT | 3 cut(s) | 100, 367, 675 |
| AluI | AGCT | 3 cut(s) | 100, 367, 675 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| Alw26I | GTCTC | 3 cut(s) | 30, 216, 257 |
| AlwI | GGATC | 2 cut(s) | 251, 586 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 46 |
| Aor13HI | TCCGGA | 1 cut(s) | 259 |
| AoxI | GGCC | 1 cut(s) | 506 |
| ApeKI | GCWGC | 1 cut(s) | 54 |
| AspLEI | GCGC | 1 cut(s) | 405 |
| AsuHPI | GGTGA | 1 cut(s) | 107 |
| BalI | TGGCCA | 1 cut(s) | 508 |
| BanI | GGYRCC | 1 cut(s) | 541 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| BbsI | GAAGAC | 1 cut(s) | 579 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BbvI | GCAGC | 1 cut(s) | 66 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 470, 504 |
| BciT130I | CCWGG | 1 cut(s) | 505 |
| BcoDI | GTCTC | 3 cut(s) | 30, 216, 257 |
| BfaI | CTAG | 5 cut(s) | 29, 144, 176, 629, 676 |
| BisI | GCNGC | 1 cut(s) | 55 |
| BlsI | GCNGC | 1 cut(s) | 56 |
| Bme1390I | CCNGG | 1 cut(s) | 505 |
| BmiI | GGNNCC | 3 cut(s) | 185, 234, 543 |
| BmrFI | CCNGG | 1 cut(s) | 505 |
| BmrI | ACTGGG | 1 cut(s) | 395 |
| BmsI | GCATC | 5 cut(s) | 42, 127, 362, 414, 424 |
| BmuI | ACTGGG | 1 cut(s) | 395 |
| BpiI | GAAGAC | 1 cut(s) | 579 |
| BsaHI | GRCGYC | 1 cut(s) | 483 |
| BsaI | GGTCTC | 1 cut(s) | 30 |
| BsaWI | WCCGGW | 1 cut(s) | 259 |
| Bse1I | ACTGG | 3 cut(s) | 297, 390, 452 |
| Bse3DI | GCAATG | 1 cut(s) | 486 |
| BseAI | TCCGGA | 1 cut(s) | 259 |
| BseBI | CCWGG | 1 cut(s) | 505 |
| BseGI | GGATG | 1 cut(s) | 466 |
| BseMI | GCAATG | 1 cut(s) | 486 |
| BseMII | CTCAG | 2 cut(s) | 53, 423 |
| BseNI | ACTGG | 3 cut(s) | 297, 390, 452 |
| BseRI | GAGGAG | 2 cut(s) | 224, 227 |
| BseXI | GCAGC | 1 cut(s) | 66 |
| BshFI | GGCC | 1 cut(s) | 508 |
| BshNI | GGYRCC | 1 cut(s) | 541 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| BsiSI | CCGG | 1 cut(s) | 260 |
| BsmAI | GTCTC | 3 cut(s) | 30, 216, 257 |
| BsmBI | CGTCTC | 1 cut(s) | 257 |
| BsnI | GGCC | 1 cut(s) | 508 |
| Bso31I | GGTCTC | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp13I | TCCGGA | 1 cut(s) | 259 |
| Bsp143I | GATC | 3 cut(s) | 256, 361, 591 |
| BspACI | CCGC | 2 cut(s) | 275, 599 |
| BspANI | GGCC | 1 cut(s) | 508 |
| BspCNI | CTCAG | 2 cut(s) | 52, 422 |
| BspEI | TCCGGA | 1 cut(s) | 259 |
| BspLI | GGNNCC | 3 cut(s) | 185, 234, 543 |
| BspPI | GGATC | 2 cut(s) | 251, 586 |
| BspT107I | GGYRCC | 1 cut(s) | 541 |
| BspTNI | GGTCTC | 1 cut(s) | 30 |
| BsrBI | CCGCTC | 1 cut(s) | 599 |
| BsrDI | GCAATG | 1 cut(s) | 486 |
| BsrI | ACTGG | 3 cut(s) | 297, 390, 452 |
| BssMI | GATC | 3 cut(s) | 256, 361, 591 |
| BssNI | GRCGYC | 1 cut(s) | 483 |
| Bst2UI | CCWGG | 1 cut(s) | 505 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 150 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 110, 153 |
| BstACI | GRCGYC | 1 cut(s) | 483 |
| BstDEI | CTNAG | 2 cut(s) | 39, 409 |
| BstF5I | GGATG | 1 cut(s) | 466 |
| BstHHI | GCGC | 1 cut(s) | 405 |
| BstKTI | GATC | 3 cut(s) | 259, 364, 594 |
| BstMAI | GTCTC | 3 cut(s) | 30, 216, 257 |
| BstMBI | GATC | 3 cut(s) | 256, 361, 591 |
| BstNI | CCWGG | 1 cut(s) | 505 |
| BstSCI | CCNGG | 1 cut(s) | 503 |
| BstV1I | GCAGC | 1 cut(s) | 66 |
| BstV2I | GAAGAC | 1 cut(s) | 579 |
| BstX2I | RGATCY | 1 cut(s) | 591 |
| BstYI | RGATCY | 1 cut(s) | 591 |
| BsuRI | GGCC | 1 cut(s) | 508 |
| BtsCI | GGATG | 1 cut(s) | 466 |
| BtsI | GCAGTG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 4 cut(s) | 69, 114, 383, 459 |
| CaiI | CAGNNNCTG | 1 cut(s) | 46 |
| CfoI | GCGC | 1 cut(s) | 405 |
| CseI | GACGC | 1 cut(s) | 491 |
| CviAII | CATG | 4 cut(s) | 167, 229, 281, 374 |
| CviJI | RGCY | 9 cut(s) | 100, 233, 367, 422, 508, 554, 568, 647, 675 |
| CviKI_1 | RGCY | 9 cut(s) | 100, 233, 367, 422, 508, 554, 568, 647, 675 |
| DdeI | CTNAG | 2 cut(s) | 39, 409 |
| DpnI | GATC | 3 cut(s) | 258, 363, 593 |
| DpnII | GATC | 3 cut(s) | 256, 361, 591 |
| DraI | TTTAAA | 1 cut(s) | 129 |
| EaeI | YGGCCR | 1 cut(s) | 506 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 110, 153 |
| EarI | CTCTTC | 3 cut(s) | 62, 110, 153 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco31I | GGTCTC | 1 cut(s) | 30 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| Eco57I | CTGAAG | 2 cut(s) | 228, 552 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoRII | CCWGG | 1 cut(s) | 503 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| Esp3I | CGTCTC | 1 cut(s) | 257 |
| FaeI | CATG | 4 cut(s) | 170, 232, 284, 377 |
| FaiI | YATR | 7 cut(s) | 168, 230, 282, 375, 401, 651, 653 |
| FatI | CATG | 4 cut(s) | 166, 228, 280, 373 |
| Fnu4HI | GCNGC | 1 cut(s) | 55 |
| FokI | GGATG | 1 cut(s) | 473 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 1 cut(s) | 55 |
| FspAI | RTGCGCAY | 1 cut(s) | 404 |
| FspBI | CTAG | 5 cut(s) | 29, 144, 176, 629, 676 |
| FspI | TGCGCA | 1 cut(s) | 404 |
| GlaI | GCGC | 1 cut(s) | 404 |
| GluI | GCNGC | 1 cut(s) | 55 |
| HaeIII | GGCC | 1 cut(s) | 508 |
| HapII | CCGG | 1 cut(s) | 260 |
| HgaI | GACGC | 1 cut(s) | 491 |
| HhaI | GCGC | 1 cut(s) | 405 |
| Hin1I | GRCGYC | 1 cut(s) | 483 |
| Hin1II | CATG | 4 cut(s) | 170, 232, 284, 377 |
| Hin6I | GCGC | 1 cut(s) | 403 |
| HinP1I | GCGC | 1 cut(s) | 403 |
| HincII | GTYRAC | 1 cut(s) | 313 |
| HindII | GTYRAC | 1 cut(s) | 313 |
| HpaII | CCGG | 1 cut(s) | 260 |
| HphI | GGTGA | 1 cut(s) | 107 |
| Hpy166II | GTNNAC | 2 cut(s) | 290, 313 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 90, 596 |
| Hpy188III | TCNNGA | 2 cut(s) | 176, 260 |
| Hpy8I | GTNNAC | 2 cut(s) | 290, 313 |
| Hpy99I | CGWCG | 1 cut(s) | 485 |
| HpyAV | CCTTC | 2 cut(s) | 173, 451 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 150 |
| HpyCH4V | TGCA | 5 cut(s) | 54, 107, 140, 280, 353 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 409 |
| Hsp92I | GRCGYC | 1 cut(s) | 483 |
| Hsp92II | CATG | 4 cut(s) | 170, 232, 284, 377 |
| HspAI | GCGC | 1 cut(s) | 403 |
| Kpn2I | TCCGGA | 1 cut(s) | 259 |
| Kzo9I | GATC | 3 cut(s) | 256, 361, 591 |
| LmnI | GCTCC | 1 cut(s) | 238 |
| Lsp1109I | GCAGC | 1 cut(s) | 66 |
| LweI | GCATC | 5 cut(s) | 42, 127, 362, 414, 424 |
| MaeI | CTAG | 5 cut(s) | 29, 144, 176, 629, 676 |
| MaeIII | GTNAC | 2 cut(s) | 441, 469 |
| MalI | GATC | 3 cut(s) | 258, 363, 593 |
| MbiI | CCGCTC | 1 cut(s) | 599 |
| MboI | GATC | 3 cut(s) | 256, 361, 591 |
| MboII | GAAGA | 6 cut(s) | 79, 124, 127, 170, 545, 584 |
| MflI | RGATCY | 1 cut(s) | 591 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MlsI | TGGCCA | 1 cut(s) | 508 |
| MluCI | AATT | 1 cut(s) | 333 |
| MluNI | TGGCCA | 1 cut(s) | 508 |
| MnlI | CCTC | 5 cut(s) | 8, 111, 202, 205, 208 |
| Mox20I | TGGCCA | 1 cut(s) | 508 |
| MroI | TCCGGA | 1 cut(s) | 259 |
| MscI | TGGCCA | 1 cut(s) | 508 |
| MseI | TTAA | 2 cut(s) | 128, 609 |
| MslI | CAYNNNNRTG | 2 cut(s) | 62, 285 |
| Msp20I | TGGCCA | 1 cut(s) | 508 |
| MspA1I | CMGCKG | 1 cut(s) | 367 |
| MspI | CCGG | 1 cut(s) | 260 |
| MspR9I | CCNGG | 1 cut(s) | 505 |
| MvaI | CCWGG | 1 cut(s) | 505 |
| NdeII | GATC | 3 cut(s) | 256, 361, 591 |
| NlaIII | CATG | 4 cut(s) | 170, 232, 284, 377 |
| NlaIV | GGNNCC | 3 cut(s) | 185, 234, 543 |
| NmuCI | GTSAC | 1 cut(s) | 469 |
| NsbI | TGCGCA | 1 cut(s) | 404 |
| OliI | CACNNNNGTG | 1 cut(s) | 62 |
| PkrI | GCNGC | 1 cut(s) | 56 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 503 |
| PspGI | CCWGG | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 3 cut(s) | 185, 234, 543 |
| PstNI | CAGNNNCTG | 1 cut(s) | 46 |
| PsuI | RGATCY | 1 cut(s) | 591 |
| PvuII | CAGCTG | 1 cut(s) | 367 |
| RseI | CAYNNNNRTG | 2 cut(s) | 62, 285 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SaqAI | TTAA | 2 cut(s) | 128, 609 |
| SatI | GCNGC | 1 cut(s) | 55 |
| Sau3AI | GATC | 3 cut(s) | 256, 361, 591 |
| ScrFI | CCNGG | 1 cut(s) | 505 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SetI | ASST | 6 cut(s) | 102, 122, 219, 369, 448, 677 |
| SfaNI | GCATC | 5 cut(s) | 42, 127, 362, 414, 424 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 62, 285 |
| Sse9I | AATT | 1 cut(s) | 333 |
| SsiI | CCGC | 2 cut(s) | 275, 599 |
| SspMI | CTAG | 5 cut(s) | 29, 144, 176, 629, 676 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| StyD4I | CCNGG | 1 cut(s) | 503 |
| TaaI | ACNGT | 2 cut(s) | 64, 150 |
| TaqI | TCGA | 3 cut(s) | 207, 356, 418 |
| TasI | AATT | 1 cut(s) | 333 |
| Tru1I | TTAA | 2 cut(s) | 128, 609 |
| Tru9I | TTAA | 2 cut(s) | 128, 609 |
| TscAI | CASTG | 4 cut(s) | 69, 114, 390, 459 |
| TseFI | GTSAC | 1 cut(s) | 469 |
| TseI | GCWGC | 1 cut(s) | 54 |
| Tsp45I | GTSAC | 1 cut(s) | 469 |
| TspDTI | ATGAA | 2 cut(s) | 183, 651 |
| TspRI | CASTG | 4 cut(s) | 69, 114, 390, 459 |
| XbaI | TCTAGA | 1 cut(s) | 175 |
| XspI | CTAG | 5 cut(s) | 29, 144, 176, 629, 676 |