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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 131 |
| AccII | CGCG | 1 cut(s) | 17 |
| AciI | CCGC | 3 cut(s) | 17, 143, 255 |
| AclWI | GGATC | 3 cut(s) | 23, 36, 235 |
| AcsI | RAATTY | 1 cut(s) | 539 |
| AgsI | TTSAA | 2 cut(s) | 390, 523 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 258 |
| AluBI | AGCT | 5 cut(s) | 82, 188, 278, 341, 445 |
| AluI | AGCT | 5 cut(s) | 82, 188, 278, 341, 445 |
| Alw21I | GWGCWC | 1 cut(s) | 89 |
| Alw26I | GTCTC | 1 cut(s) | 139 |
| Alw44I | GTGCAC | 1 cut(s) | 85 |
| AlwI | GGATC | 3 cut(s) | 23, 36, 235 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| ApaLI | GTGCAC | 1 cut(s) | 85 |
| ApeKI | GCWGC | 2 cut(s) | 185, 200 |
| ApoI | RAATTY | 1 cut(s) | 539 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| BaeGI | GKGCMC | 1 cut(s) | 89 |
| BamHI | GGATCC | 1 cut(s) | 28 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 1 cut(s) | 89 |
| BbvCI | CCTCAGC | 1 cut(s) | 24 |
| BbvI | GCAGC | 2 cut(s) | 197, 212 |
| BccI | CCATC | 2 cut(s) | 314, 401 |
| BceAI | ACGGC | 1 cut(s) | 156 |
| BclI | TGATCA | 1 cut(s) | 484 |
| BcoDI | GTCTC | 1 cut(s) | 139 |
| BfaI | CTAG | 3 cut(s) | 60, 189, 206 |
| BglII | AGATCT | 1 cut(s) | 92 |
| BisI | GCNGC | 2 cut(s) | 186, 201 |
| BlpI | GCTNAGC | 1 cut(s) | 446 |
| BlsI | GCNGC | 2 cut(s) | 187, 202 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 258 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmiI | GGNNCC | 2 cut(s) | 30, 57 |
| BmrI | ACTGGG | 1 cut(s) | 122 |
| BmsI | GCATC | 1 cut(s) | 154 |
| BmuI | ACTGGG | 1 cut(s) | 122 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| BpmI | CTGGAG | 1 cut(s) | 180 |
| Bpu10I | CCTNAGC | 1 cut(s) | 24 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 446 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 112, 142, 288, 318 |
| Bse1I | ACTGG | 1 cut(s) | 117 |
| BseGI | GGATG | 3 cut(s) | 325, 377, 445 |
| BseMII | CTCAG | 1 cut(s) | 15 |
| BseNI | ACTGG | 1 cut(s) | 117 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BseSI | GKGCMC | 1 cut(s) | 89 |
| BseXI | GCAGC | 2 cut(s) | 197, 212 |
| Bsh1236I | CGCG | 1 cut(s) | 17 |
| BsiHKAI | GWGCWC | 1 cut(s) | 89 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BslFI | GGGAC | 2 cut(s) | 137, 513 |
| BsmAI | GTCTC | 1 cut(s) | 139 |
| BsmFI | GGGAC | 2 cut(s) | 137, 513 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 1 cut(s) | 89 |
| Bsp143I | GATC | 4 cut(s) | 28, 92, 227, 484 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 446 |
| BspACI | CCGC | 3 cut(s) | 17, 143, 255 |
| BspCNI | CTCAG | 1 cut(s) | 16 |
| BspFNI | CGCG | 1 cut(s) | 17 |
| BspLI | GGNNCC | 2 cut(s) | 30, 57 |
| BspPI | GGATC | 3 cut(s) | 23, 36, 235 |
| BsrI | ACTGG | 1 cut(s) | 117 |
| BssMI | GATC | 4 cut(s) | 28, 92, 227, 484 |
| Bst4CI | ACNGT | 1 cut(s) | 128 |
| BstDEI | CTNAG | 2 cut(s) | 24, 446 |
| BstF5I | GGATG | 3 cut(s) | 325, 377, 445 |
| BstFNI | CGCG | 1 cut(s) | 17 |
| BstKTI | GATC | 4 cut(s) | 31, 95, 230, 487 |
| BstMAI | GTCTC | 1 cut(s) | 139 |
| BstMBI | GATC | 4 cut(s) | 28, 92, 227, 484 |
| BstNSI | RCATGY | 1 cut(s) | 261 |
| BstSLI | GKGCMC | 1 cut(s) | 89 |
| BstUI | CGCG | 1 cut(s) | 17 |
| BstV1I | GCAGC | 2 cut(s) | 197, 212 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 3 cut(s) | 28, 92, 227 |
| BstYI | RGATCY | 3 cut(s) | 28, 92, 227 |
| BtsCI | GGATG | 3 cut(s) | 325, 377, 445 |
| BtsIMutI | CAGTG | 1 cut(s) | 133 |
| CseI | GACGC | 1 cut(s) | 23 |
| CviAII | CATG | 3 cut(s) | 224, 258, 488 |
| CviJI | RGCY | 9 cut(s) | 23, 50, 58, 82, 188, 278, 341, 445, 482 |
| CviKI_1 | RGCY | 9 cut(s) | 23, 50, 58, 82, 188, 278, 341, 445, 482 |
| DdeI | CTNAG | 2 cut(s) | 24, 446 |
| DpnI | GATC | 4 cut(s) | 30, 94, 229, 486 |
| DpnII | GATC | 4 cut(s) | 28, 92, 227, 484 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 131 |
| DriI | GACNNNNNGTC | 1 cut(s) | 258 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 131 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 258 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| FaeI | CATG | 3 cut(s) | 227, 261, 491 |
| FaiI | YATR | 3 cut(s) | 225, 259, 489 |
| FaqI | GGGAC | 2 cut(s) | 137, 513 |
| FatI | CATG | 3 cut(s) | 223, 257, 487 |
| FbaI | TGATCA | 1 cut(s) | 484 |
| Fnu4HI | GCNGC | 2 cut(s) | 186, 201 |
| FokI | GGATG | 3 cut(s) | 332, 384, 452 |
| Fsp4HI | GCNGC | 2 cut(s) | 186, 201 |
| FspBI | CTAG | 3 cut(s) | 60, 189, 206 |
| GluI | GCNGC | 2 cut(s) | 186, 201 |
| GsuI | CTGGAG | 1 cut(s) | 180 |
| HgaI | GACGC | 1 cut(s) | 23 |
| Hin1II | CATG | 3 cut(s) | 227, 261, 491 |
| HinfI | GANTC | 1 cut(s) | 63 |
| Hpy166II | GTNNAC | 2 cut(s) | 87, 248 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 77, 136 |
| Hpy8I | GTNNAC | 2 cut(s) | 87, 248 |
| Hpy99I | CGWCG | 1 cut(s) | 142 |
| HpyAV | CCTTC | 1 cut(s) | 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 128 |
| HpyCH4V | TGCA | 2 cut(s) | 87, 167 |
| HpyF3I | CTNAG | 2 cut(s) | 24, 446 |
| Hsp92II | CATG | 3 cut(s) | 227, 261, 491 |
| Ksp22I | TGATCA | 1 cut(s) | 484 |
| Kzo9I | GATC | 4 cut(s) | 28, 92, 227, 484 |
| LmnI | GCTCC | 2 cut(s) | 55, 106 |
| LpnPI | CCDG | 6 cut(s) | 45, 81, 98, 210, 461, 482 |
| Lsp1109I | GCAGC | 2 cut(s) | 197, 212 |
| LweI | GCATC | 1 cut(s) | 154 |
| MaeI | CTAG | 3 cut(s) | 60, 189, 206 |
| MaeIII | GTNAC | 1 cut(s) | 458 |
| MalI | GATC | 4 cut(s) | 30, 94, 229, 486 |
| MboI | GATC | 4 cut(s) | 28, 92, 227, 484 |
| MboII | GAAGA | 6 cut(s) | 23, 47, 58, 311, 542, 545 |
| MflI | RGATCY | 3 cut(s) | 28, 92, 227 |
| MhlI | GDGCHC | 1 cut(s) | 89 |
| MluCI | AATT | 4 cut(s) | 330, 351, 503, 539 |
| MmeI | TCCRAC | 4 cut(s) | 81, 287, 447, 490 |
| MnlI | CCTC | 7 cut(s) | 19, 97, 114, 166, 349, 387, 430 |
| MseI | TTAA | 2 cut(s) | 308, 544 |
| MvnI | CGCG | 1 cut(s) | 17 |
| NdeII | GATC | 4 cut(s) | 28, 92, 227, 484 |
| NlaIII | CATG | 3 cut(s) | 227, 261, 491 |
| NlaIV | GGNNCC | 2 cut(s) | 30, 57 |
| NmuCI | GTSAC | 1 cut(s) | 458 |
| NspI | RCATGY | 1 cut(s) | 261 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PfeI | GAWTC | 1 cut(s) | 63 |
| PkrI | GCNGC | 2 cut(s) | 187, 202 |
| PspN4I | GGNNCC | 2 cut(s) | 30, 57 |
| PsuI | RGATCY | 3 cut(s) | 28, 92, 227 |
| SaqAI | TTAA | 2 cut(s) | 308, 544 |
| SatI | GCNGC | 2 cut(s) | 186, 201 |
| Sau3AI | GATC | 4 cut(s) | 28, 92, 227, 484 |
| SduI | GDGCHC | 1 cut(s) | 89 |
| SetI | ASST | 8 cut(s) | 84, 177, 190, 241, 280, 343, 447, 480 |
| SfaNI | GCATC | 1 cut(s) | 154 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 4 cut(s) | 330, 351, 503, 539 |
| SsiI | CCGC | 3 cut(s) | 17, 143, 255 |
| SspMI | CTAG | 3 cut(s) | 60, 189, 206 |
| TaaI | ACNGT | 1 cut(s) | 128 |
| TaqI | TCGA | 3 cut(s) | 78, 137, 280 |
| TasI | AATT | 4 cut(s) | 330, 351, 503, 539 |
| TfiI | GAWTC | 1 cut(s) | 63 |
| Tru1I | TTAA | 2 cut(s) | 308, 544 |
| Tru9I | TTAA | 2 cut(s) | 308, 544 |
| TscAI | CASTG | 1 cut(s) | 133 |
| TseFI | GTSAC | 1 cut(s) | 458 |
| TseI | GCWGC | 2 cut(s) | 185, 200 |
| Tsp45I | GTSAC | 1 cut(s) | 458 |
| TspDTI | ATGAA | 1 cut(s) | 288 |
| TspRI | CASTG | 1 cut(s) | 133 |
| VneI | GTGCAC | 1 cut(s) | 85 |
| XapI | RAATTY | 1 cut(s) | 539 |
| XceI | RCATGY | 1 cut(s) | 261 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XspI | CTAG | 3 cut(s) | 60, 189, 206 |