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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 524, 1049 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 3 cut(s) | 31, 748, 1429 |
| AciI | CCGC | 2 cut(s) | 305, 924 |
| AclWI | GGATC | 1 cut(s) | 948 |
| AcoI | YGGCCR | 1 cut(s) | 306 |
| AcsI | RAATTY | 3 cut(s) | 98, 1018, 1308 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AdeI | CACNNNGTG | 1 cut(s) | 246 |
| AfaI | GTAC | 4 cut(s) | 149, 873, 1122, 1395 |
| AfeI | AGCGCT | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 246, 363 |
| AflII | CTTAAG | 1 cut(s) | 650 |
| AgsI | TTSAA | 8 cut(s) | 80, 320, 394, 608, 758, 770, 830, 1106 |
| AjnI | CCWGG | 2 cut(s) | 409, 1181 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1295, 1327 |
| AluBI | AGCT | 7 cut(s) | 58, 208, 604, 720, 742, 1045, 1358 |
| AluI | AGCT | 7 cut(s) | 58, 208, 604, 720, 742, 1045, 1358 |
| Alw26I | GTCTC | 1 cut(s) | 1025 |
| AlwI | GGATC | 1 cut(s) | 948 |
| Ama87I | CYCGRG | 1 cut(s) | 290 |
| Aor13HI | TCCGGA | 3 cut(s) | 31, 748, 1429 |
| Aor51HI | AGCGCT | 1 cut(s) | 351 |
| AoxI | GGCC | 3 cut(s) | 306, 709, 1184 |
| ApeKI | GCWGC | 7 cut(s) | 254, 601, 720, 1211, 1220, 1229, 1420 |
| ApoI | RAATTY | 3 cut(s) | 98, 1018, 1308 |
| AspLEI | GCGC | 3 cut(s) | 352, 1250, 1296 |
| AspS9I | GGNCC | 1 cut(s) | 751 |
| AsuHPI | GGTGA | 4 cut(s) | 279, 373, 818, 1121 |
| AvaI | CYCGRG | 1 cut(s) | 290 |
| AvaII | GGWCC | 1 cut(s) | 751 |
| AxyI | CCTNAGG | 1 cut(s) | 1188 |
| BbvCI | CCTCAGC | 1 cut(s) | 342 |
| BbvI | GCAGC | 7 cut(s) | 266, 613, 707, 1207, 1223, 1241, 1407 |
| BccI | CCATC | 4 cut(s) | 266, 454, 797, 1259 |
| BciT130I | CCWGG | 2 cut(s) | 411, 1183 |
| BcoDI | GTCTC | 1 cut(s) | 1025 |
| BfmI | CTRYAG | 3 cut(s) | 450, 1209, 1421 |
| BfoI | RGCGCY | 2 cut(s) | 353, 1251 |
| BfrI | CTTAAG | 1 cut(s) | 650 |
| BisI | GCNGC | 8 cut(s) | 255, 306, 602, 721, 1212, 1221, 1230, 1421 |
| BlsI | GCNGC | 8 cut(s) | 256, 307, 603, 722, 1213, 1222, 1231, 1422 |
| Bme1390I | CCNGG | 2 cut(s) | 411, 1183 |
| Bme18I | GGWCC | 1 cut(s) | 751 |
| BmeT110I | CYCGRG | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 1 cut(s) | 751 |
| BmiI | GGNNCC | 2 cut(s) | 912, 1351 |
| BmrFI | CCNGG | 2 cut(s) | 411, 1183 |
| BmsI | GCATC | 6 cut(s) | 35, 57, 216, 415, 1102, 1150 |
| Bpu10I | CCTNAGC | 2 cut(s) | 342, 385 |
| BpuEI | CTTGAG | 1 cut(s) | 480 |
| Bsa29I | ATCGAT | 1 cut(s) | 1155 |
| BsaAI | YACGTR | 1 cut(s) | 167 |
| BsaJI | CCNNGG | 3 cut(s) | 291, 712, 860 |
| BsaWI | WCCGGW | 3 cut(s) | 31, 748, 1429 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 246, 363 |
| Bse1I | ACTGG | 1 cut(s) | 1130 |
| Bse21I | CCTNAGG | 1 cut(s) | 1188 |
| BseAI | TCCGGA | 3 cut(s) | 31, 748, 1429 |
| BseBI | CCWGG | 2 cut(s) | 411, 1183 |
| BseCI | ATCGAT | 1 cut(s) | 1155 |
| BseDI | CCNNGG | 3 cut(s) | 291, 712, 860 |
| BseGI | GGATG | 4 cut(s) | 40, 48, 277, 406 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 246, 363 |
| BseMII | CTCAG | 2 cut(s) | 194, 333 |
| BseNI | ACTGG | 1 cut(s) | 1130 |
| BseRI | GAGGAG | 6 cut(s) | 438, 545, 548, 590, 974, 1413 |
| BseXI | GCAGC | 7 cut(s) | 266, 613, 707, 1207, 1223, 1241, 1407 |
| BseYI | CCCAGC | 1 cut(s) | 208 |
| Bsh1285I | CGRYCG | 1 cut(s) | 235 |
| BshFI | GGCC | 3 cut(s) | 308, 711, 1186 |
| BshVI | ATCGAT | 1 cut(s) | 1155 |
| BsiEI | CGRYCG | 1 cut(s) | 235 |
| BsiHKCI | CYCGRG | 1 cut(s) | 290 |
| BsiSI | CCGG | 3 cut(s) | 32, 749, 1430 |
| BslFI | GGGAC | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 246, 363 |
| BsmAI | GTCTC | 1 cut(s) | 1025 |
| BsmFI | GGGAC | 1 cut(s) | 200 |
| BsmI | GAATGC | 1 cut(s) | 1038 |
| BsnI | GGCC | 3 cut(s) | 308, 711, 1186 |
| BsoBI | CYCGRG | 1 cut(s) | 290 |
| Bsp13I | TCCGGA | 3 cut(s) | 31, 748, 1429 |
| Bsp1407I | TGTACA | 1 cut(s) | 871 |
| Bsp143I | GATC | 2 cut(s) | 232, 940 |
| Bsp19I | CCATGG | 1 cut(s) | 712 |
| BspACI | CCGC | 2 cut(s) | 305, 924 |
| BspANI | GGCC | 3 cut(s) | 308, 711, 1186 |
| BspCNI | CTCAG | 3 cut(s) | 4, 193, 334 |
| BspDI | ATCGAT | 1 cut(s) | 1155 |
| BspEI | TCCGGA | 3 cut(s) | 31, 748, 1429 |
| BspHI | TCATGA | 1 cut(s) | 1014 |
| BspLI | GGNNCC | 2 cut(s) | 912, 1351 |
| BspMAI | CTGCAG | 2 cut(s) | 1213, 1425 |
| BspPI | GGATC | 1 cut(s) | 948 |
| BspTI | CTTAAG | 1 cut(s) | 650 |
| BsrGI | TGTACA | 1 cut(s) | 871 |
| BsrI | ACTGG | 1 cut(s) | 1130 |
| BssECI | CCNNGG | 3 cut(s) | 291, 712, 860 |
| BssMI | GATC | 2 cut(s) | 232, 940 |
| BssT1I | CCWWGG | 1 cut(s) | 712 |
| Bst2UI | CCWGG | 2 cut(s) | 411, 1183 |
| Bst4CI | ACNGT | 6 cut(s) | 111, 158, 781, 921, 985, 1090 |
| BstAFI | CTTAAG | 1 cut(s) | 650 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1220 |
| BstAUI | TGTACA | 1 cut(s) | 871 |
| BstBAI | YACGTR | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 3 cut(s) | 252, 621, 665 |
| BstDEI | CTNAG | 6 cut(s) | 12, 180, 342, 385, 1188, 1410 |
| BstDSI | CCRYGG | 1 cut(s) | 712 |
| BstF5I | GGATG | 4 cut(s) | 40, 48, 277, 406 |
| BstH2I | RGCGCY | 2 cut(s) | 353, 1251 |
| BstHHI | GCGC | 3 cut(s) | 352, 1250, 1296 |
| BstKTI | GATC | 2 cut(s) | 235, 943 |
| BstMAI | GTCTC | 1 cut(s) | 1025 |
| BstMBI | GATC | 2 cut(s) | 232, 940 |
| BstMCI | CGRYCG | 1 cut(s) | 235 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 347, 472, 629, 717, 1217, 1220, 1226, 1229 |
| BstNI | CCWGG | 2 cut(s) | 411, 1183 |
| BstSCI | CCNGG | 2 cut(s) | 409, 1181 |
| BstSFI | CTRYAG | 3 cut(s) | 450, 1209, 1421 |
| BstV1I | GCAGC | 7 cut(s) | 266, 613, 707, 1207, 1223, 1241, 1407 |
| BstX2I | RGATCY | 1 cut(s) | 940 |
| BstYI | RGATCY | 1 cut(s) | 940 |
| Bsu15I | ATCGAT | 1 cut(s) | 1155 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1188 |
| BsuRI | GGCC | 3 cut(s) | 308, 711, 1186 |
| BsuTUI | ATCGAT | 1 cut(s) | 1155 |
| BtgI | CCRYGG | 1 cut(s) | 712 |
| BtsCI | GGATG | 4 cut(s) | 40, 48, 277, 406 |
| BtsIMutI | CAGTG | 3 cut(s) | 154, 357, 1137 |
| Cac8I | GCNNGC | 3 cut(s) | 252, 621, 665 |
| CciI | TCATGA | 1 cut(s) | 1014 |
| CfoI | GCGC | 3 cut(s) | 352, 1250, 1296 |
| Cfr13I | GGNCC | 1 cut(s) | 751 |
| ClaI | ATCGAT | 1 cut(s) | 1155 |
| CseI | GACGC | 1 cut(s) | 347 |
| Csp6I | GTAC | 4 cut(s) | 148, 872, 1121, 1394 |
| CviAII | CATG | 6 cut(s) | 713, 845, 1015, 1076, 1238, 1300 |
| CviQI | GTAC | 4 cut(s) | 148, 872, 1121, 1394 |
| DdeI | CTNAG | 6 cut(s) | 12, 180, 342, 385, 1188, 1410 |
| DpnI | GATC | 2 cut(s) | 234, 942 |
| DpnII | GATC | 2 cut(s) | 232, 940 |
| DraIII | CACNNNGTG | 1 cut(s) | 246 |
| EaeI | YGGCCR | 1 cut(s) | 306 |
| Eco130I | CCWWGG | 1 cut(s) | 712 |
| Eco47I | GGWCC | 1 cut(s) | 751 |
| Eco47III | AGCGCT | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| Eco81I | CCTNAGG | 1 cut(s) | 1188 |
| Eco88I | CYCGRG | 1 cut(s) | 290 |
| EcoRII | CCWGG | 2 cut(s) | 409, 1181 |
| EcoT14I | CCWWGG | 1 cut(s) | 712 |
| EcoT22I | ATGCAT | 1 cut(s) | 50 |
| ErhI | CCWWGG | 1 cut(s) | 712 |
| FaeI | CATG | 6 cut(s) | 716, 848, 1018, 1079, 1241, 1303 |
| FaqI | GGGAC | 1 cut(s) | 200 |
| FatI | CATG | 6 cut(s) | 712, 844, 1014, 1075, 1237, 1299 |
| Fnu4HI | GCNGC | 8 cut(s) | 255, 306, 602, 721, 1212, 1221, 1230, 1421 |
| FokI | GGATG | 4 cut(s) | 35, 47, 284, 393 |
| Fsp4HI | GCNGC | 8 cut(s) | 255, 306, 602, 721, 1212, 1221, 1230, 1421 |
| GlaI | GCGC | 3 cut(s) | 351, 1249, 1295 |
| GluI | GCNGC | 8 cut(s) | 255, 306, 602, 721, 1212, 1221, 1230, 1421 |
| GsaI | CCCAGC | 1 cut(s) | 212 |
| HaeII | RGCGCY | 2 cut(s) | 353, 1251 |
| HaeIII | GGCC | 3 cut(s) | 308, 711, 1186 |
| HapII | CCGG | 3 cut(s) | 32, 749, 1430 |
| HgaI | GACGC | 1 cut(s) | 347 |
| HhaI | GCGC | 3 cut(s) | 352, 1250, 1296 |
| Hin1II | CATG | 6 cut(s) | 716, 848, 1018, 1079, 1241, 1303 |
| Hin6I | GCGC | 3 cut(s) | 350, 1248, 1294 |
| HinP1I | GCGC | 3 cut(s) | 350, 1248, 1294 |
| HincII | GTYRAC | 2 cut(s) | 369, 988 |
| HindII | GTYRAC | 2 cut(s) | 369, 988 |
| HindIII | AAGCTT | 1 cut(s) | 740 |
| HinfI | GANTC | 4 cut(s) | 213, 595, 1011, 1126 |
| HpaII | CCGG | 3 cut(s) | 32, 749, 1430 |
| HphI | GGTGA | 4 cut(s) | 279, 373, 818, 1121 |
| Hpy166II | GTNNAC | 4 cut(s) | 369, 857, 883, 988 |
| Hpy188I | TCNGA | 6 cut(s) | 183, 265, 506, 945, 1254, 1365 |
| Hpy188III | TCNNGA | 8 cut(s) | 32, 734, 749, 784, 908, 938, 1015, 1430 |
| Hpy8I | GTNNAC | 4 cut(s) | 369, 857, 883, 988 |
| HpyAV | CCTTC | 5 cut(s) | 295, 356, 764, 1100, 1237 |
| HpyCH4III | ACNGT | 6 cut(s) | 111, 158, 781, 921, 985, 1090 |
| HpyCH4IV | ACGT | 2 cut(s) | 166, 765 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 347, 472, 629, 717, 1217, 1220, 1226, 1229 |
| HpyF3I | CTNAG | 6 cut(s) | 12, 180, 342, 385, 1188, 1410 |
| HpySE526I | ACGT | 2 cut(s) | 166, 765 |
| Hsp92II | CATG | 6 cut(s) | 716, 848, 1018, 1079, 1241, 1303 |
| HspAI | GCGC | 3 cut(s) | 350, 1248, 1294 |
| Kpn2I | TCCGGA | 3 cut(s) | 31, 748, 1429 |
| Kzo9I | GATC | 2 cut(s) | 232, 940 |
| LmnI | GCTCC | 5 cut(s) | 63, 347, 535, 717, 1255 |
| Lsp1109I | GCAGC | 7 cut(s) | 266, 613, 707, 1207, 1223, 1241, 1407 |
| LweI | GCATC | 6 cut(s) | 35, 57, 216, 415, 1102, 1150 |
| MaeII | ACGT | 2 cut(s) | 166, 765 |
| MaeIII | GTNAC | 6 cut(s) | 66, 162, 682, 816, 1084, 1201 |
| MalI | GATC | 2 cut(s) | 234, 942 |
| MboI | GATC | 2 cut(s) | 232, 940 |
| MboII | GAAGA | 4 cut(s) | 92, 406, 620, 799 |
| MfeI | CAATTG | 1 cut(s) | 545 |
| MflI | RGATCY | 1 cut(s) | 940 |
| MluCI | AATT | 7 cut(s) | 98, 194, 277, 545, 791, 1018, 1308 |
| MlyI | GAGTC | 2 cut(s) | 222, 1020 |
| Mph1103I | ATGCAT | 1 cut(s) | 50 |
| MroI | TCCGGA | 3 cut(s) | 31, 748, 1429 |
| MseI | TTAA | 4 cut(s) | 102, 326, 651, 744 |
| MslI | CAYNNNNRTG | 2 cut(s) | 689, 1080 |
| MspCI | CTTAAG | 1 cut(s) | 650 |
| MspI | CCGG | 3 cut(s) | 32, 749, 1430 |
| MspR9I | CCNGG | 2 cut(s) | 411, 1183 |
| MunI | CAATTG | 1 cut(s) | 545 |
| Mva1269I | GAATGC | 1 cut(s) | 1038 |
| MvaI | CCWGG | 2 cut(s) | 411, 1183 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 347, 472, 629, 717, 1217, 1220, 1226, 1229 |
| NcoI | CCATGG | 1 cut(s) | 712 |
| NdeII | GATC | 2 cut(s) | 232, 940 |
| NlaIII | CATG | 6 cut(s) | 716, 848, 1018, 1079, 1241, 1303 |
| NlaIV | GGNNCC | 2 cut(s) | 912, 1351 |
| NmeAIII | GCCGAG | 1 cut(s) | 649 |
| NmuCI | GTSAC | 4 cut(s) | 66, 162, 682, 1084 |
| NsiI | ATGCAT | 1 cut(s) | 50 |
| PagI | TCATGA | 1 cut(s) | 1014 |
| PctI | GAATGC | 1 cut(s) | 1038 |
| PfeI | GAWTC | 2 cut(s) | 595, 1126 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 246 |
| PkrI | GCNGC | 8 cut(s) | 256, 307, 603, 722, 1213, 1222, 1231, 1422 |
| Ple19I | CGATCG | 1 cut(s) | 235 |
| PleI | GAGTC | 2 cut(s) | 221, 1019 |
| PpsI | GAGTC | 2 cut(s) | 221, 1019 |
| Ppu21I | YACGTR | 1 cut(s) | 167 |
| PsiI | TTATAA | 2 cut(s) | 524, 1049 |
| Psp6I | CCWGG | 2 cut(s) | 409, 1181 |
| PspFI | CCCAGC | 1 cut(s) | 208 |
| PspGI | CCWGG | 2 cut(s) | 409, 1181 |
| PspN4I | GGNNCC | 2 cut(s) | 912, 1351 |
| PspPI | GGNCC | 1 cut(s) | 751 |
| PstI | CTGCAG | 2 cut(s) | 1213, 1425 |
| PsuI | RGATCY | 1 cut(s) | 940 |
| PvuI | CGATCG | 1 cut(s) | 235 |
| RsaI | GTAC | 4 cut(s) | 149, 873, 1122, 1395 |
| RsaNI | GTAC | 4 cut(s) | 148, 872, 1121, 1394 |
| RseI | CAYNNNNRTG | 2 cut(s) | 689, 1080 |
| SaqAI | TTAA | 4 cut(s) | 102, 326, 651, 744 |
| SatI | GCNGC | 8 cut(s) | 255, 306, 602, 721, 1212, 1221, 1230, 1421 |
| Sau3AI | GATC | 2 cut(s) | 232, 940 |
| Sau96I | GGNCC | 1 cut(s) | 751 |
| SchI | GAGTC | 2 cut(s) | 222, 1020 |
| ScrFI | CCNGG | 2 cut(s) | 411, 1183 |
| SfaNI | GCATC | 6 cut(s) | 35, 57, 216, 415, 1102, 1150 |
| SfcI | CTRYAG | 3 cut(s) | 450, 1209, 1421 |
| SinI | GGWCC | 1 cut(s) | 751 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 689, 1080 |
| SmlI | CTYRAG | 2 cut(s) | 495, 650 |
| SmoI | CTYRAG | 2 cut(s) | 495, 650 |
| Sse9I | AATT | 7 cut(s) | 98, 194, 277, 545, 791, 1018, 1308 |
| SsiI | CCGC | 2 cut(s) | 305, 924 |
| SspI | AATATT | 2 cut(s) | 324, 994 |
| StyD4I | CCNGG | 2 cut(s) | 409, 1181 |
| StyI | CCWWGG | 1 cut(s) | 712 |
| TaaI | ACNGT | 6 cut(s) | 111, 158, 781, 921, 985, 1090 |
| TaiI | ACGT | 2 cut(s) | 169, 768 |
| TaqI | TCGA | 3 cut(s) | 231, 967, 1155 |
| TasI | AATT | 7 cut(s) | 98, 194, 277, 545, 791, 1018, 1308 |
| TatI | WGTACW | 2 cut(s) | 147, 871 |
| TauI | GCSGC | 1 cut(s) | 308 |
| TfiI | GAWTC | 2 cut(s) | 595, 1126 |
| Tru1I | TTAA | 4 cut(s) | 102, 326, 651, 744 |
| Tru9I | TTAA | 4 cut(s) | 102, 326, 651, 744 |
| TscAI | CASTG | 3 cut(s) | 161, 364, 1137 |
| TseFI | GTSAC | 4 cut(s) | 66, 162, 682, 1084 |
| TseI | GCWGC | 7 cut(s) | 254, 601, 720, 1211, 1220, 1229, 1420 |
| Tsp45I | GTSAC | 4 cut(s) | 66, 162, 682, 1084 |
| TspDTI | ATGAA | 5 cut(s) | 707, 711, 861, 1031, 1316 |
| TspRI | CASTG | 3 cut(s) | 161, 364, 1137 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 246 |
| Vha464I | CTTAAG | 1 cut(s) | 650 |
| VpaK11BI | GGWCC | 1 cut(s) | 751 |
| XapI | RAATTY | 3 cut(s) | 98, 1018, 1308 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 247 |
| Zsp2I | ATGCAT | 1 cut(s) | 50 |