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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 279 |
| AccII | CGCG | 1 cut(s) | 69 |
| AciI | CCGC | 1 cut(s) | 366 |
| AclWI | GGATC | 5 cut(s) | 170, 203, 216, 401, 414 |
| AcsI | RAATTY | 1 cut(s) | 273 |
| AfaI | GTAC | 1 cut(s) | 481 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 218, 416 |
| AflII | CTTAAG | 1 cut(s) | 463 |
| AgsI | TTSAA | 1 cut(s) | 457 |
| AjnI | CCWGG | 2 cut(s) | 217, 298 |
| AlwI | GGATC | 5 cut(s) | 170, 203, 216, 401, 414 |
| AoxI | GGCC | 2 cut(s) | 243, 301 |
| ApoI | RAATTY | 1 cut(s) | 273 |
| AspLEI | GCGC | 2 cut(s) | 69, 384 |
| AxyI | CCTNAGG | 1 cut(s) | 15 |
| BamHI | GGATCC | 2 cut(s) | 208, 406 |
| BauI | CACGAG | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 445 |
| BceAI | ACGGC | 2 cut(s) | 138, 288 |
| BciT130I | CCWGG | 2 cut(s) | 219, 300 |
| BfaI | CTAG | 1 cut(s) | 62 |
| BfrI | CTTAAG | 1 cut(s) | 463 |
| BmcAI | AGTACT | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 2 cut(s) | 219, 300 |
| BmiI | GGNNCC | 3 cut(s) | 127, 210, 408 |
| BmrFI | CCNGG | 2 cut(s) | 219, 300 |
| BmsI | GCATC | 1 cut(s) | 369 |
| BpiI | GAAGAC | 1 cut(s) | 445 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 117, 147 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 218, 416 |
| Bse21I | CCTNAGG | 1 cut(s) | 15 |
| Bse3DI | GCAATG | 2 cut(s) | 135, 361 |
| BseBI | CCWGG | 2 cut(s) | 219, 300 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 218, 416 |
| BseMI | GCAATG | 2 cut(s) | 135, 361 |
| BseMII | CTCAG | 1 cut(s) | 29 |
| BseYI | CCCAGC | 1 cut(s) | 350 |
| BsgI | GTGCAG | 1 cut(s) | 14 |
| Bsh1236I | CGCG | 1 cut(s) | 69 |
| BshFI | GGCC | 2 cut(s) | 245, 303 |
| BslFI | GGGAC | 1 cut(s) | 407 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 218, 416 |
| BsmFI | GGGAC | 1 cut(s) | 407 |
| BsmI | GAATGC | 1 cut(s) | 368 |
| BsnI | GGCC | 2 cut(s) | 245, 303 |
| Bsp143I | GATC | 3 cut(s) | 162, 208, 406 |
| BspACI | CCGC | 1 cut(s) | 366 |
| BspANI | GGCC | 2 cut(s) | 245, 303 |
| BspCNI | CTCAG | 1 cut(s) | 28 |
| BspFNI | CGCG | 1 cut(s) | 69 |
| BspHI | TCATGA | 1 cut(s) | 387 |
| BspLI | GGNNCC | 3 cut(s) | 127, 210, 408 |
| BspPI | GGATC | 5 cut(s) | 170, 203, 216, 401, 414 |
| BspTI | CTTAAG | 1 cut(s) | 463 |
| BsrDI | GCAATG | 2 cut(s) | 135, 361 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 3 cut(s) | 162, 208, 406 |
| BssSI | CACGAG | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 1 cut(s) | 414 |
| Bst2BI | CACGAG | 1 cut(s) | 8 |
| Bst2UI | CCWGG | 2 cut(s) | 219, 300 |
| Bst4CI | ACNGT | 3 cut(s) | 133, 196, 263 |
| Bst6I | CTCTTC | 1 cut(s) | 234 |
| BstAFI | CTTAAG | 1 cut(s) | 463 |
| BstC8I | GCNNGC | 1 cut(s) | 109 |
| BstDEI | CTNAG | 1 cut(s) | 15 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 216 |
| BstFNI | CGCG | 1 cut(s) | 69 |
| BstHHI | GCGC | 2 cut(s) | 69, 384 |
| BstKTI | GATC | 3 cut(s) | 165, 211, 409 |
| BstMBI | GATC | 3 cut(s) | 162, 208, 406 |
| BstNI | CCWGG | 2 cut(s) | 219, 300 |
| BstSCI | CCNGG | 2 cut(s) | 217, 298 |
| BstUI | CGCG | 1 cut(s) | 69 |
| BstV2I | GAAGAC | 1 cut(s) | 445 |
| BstX2I | RGATCY | 3 cut(s) | 162, 208, 406 |
| BstYI | RGATCY | 3 cut(s) | 162, 208, 406 |
| Bsu36I | CCTNAGG | 1 cut(s) | 15 |
| BsuRI | GGCC | 2 cut(s) | 245, 303 |
| BtsIMutI | CAGTG | 2 cut(s) | 129, 268 |
| Cac8I | GCNNGC | 1 cut(s) | 109 |
| CciI | TCATGA | 1 cut(s) | 387 |
| CfoI | GCGC | 2 cut(s) | 69, 384 |
| Csp6I | GTAC | 1 cut(s) | 480 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 118, 153 |
| CviAII | CATG | 3 cut(s) | 112, 388, 403 |
| CviJI | RGCY | 5 cut(s) | 128, 153, 245, 293, 303 |
| CviKI_1 | RGCY | 5 cut(s) | 128, 153, 245, 293, 303 |
| CviQI | GTAC | 1 cut(s) | 480 |
| DdeI | CTNAG | 1 cut(s) | 15 |
| DpnI | GATC | 3 cut(s) | 164, 210, 408 |
| DpnII | GATC | 3 cut(s) | 162, 208, 406 |
| Eam1104I | CTCTTC | 1 cut(s) | 234 |
| EarI | CTCTTC | 1 cut(s) | 234 |
| Eco130I | CCWWGG | 1 cut(s) | 414 |
| Eco81I | CCTNAGG | 1 cut(s) | 15 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 216 |
| EcoRII | CCWGG | 2 cut(s) | 217, 298 |
| EcoT14I | CCWWGG | 1 cut(s) | 414 |
| ErhI | CCWWGG | 1 cut(s) | 414 |
| FaeI | CATG | 3 cut(s) | 115, 391, 406 |
| FaqI | GGGAC | 1 cut(s) | 407 |
| FatI | CATG | 3 cut(s) | 111, 387, 402 |
| FauI | CCCGC | 1 cut(s) | 359 |
| FspBI | CTAG | 1 cut(s) | 62 |
| GlaI | GCGC | 2 cut(s) | 68, 383 |
| GsaI | CCCAGC | 1 cut(s) | 354 |
| HaeIII | GGCC | 2 cut(s) | 245, 303 |
| HhaI | GCGC | 2 cut(s) | 69, 384 |
| Hin1II | CATG | 3 cut(s) | 115, 391, 406 |
| Hin6I | GCGC | 2 cut(s) | 67, 382 |
| HinP1I | GCGC | 2 cut(s) | 67, 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 259, 445 |
| Hpy188III | TCNNGA | 4 cut(s) | 17, 62, 206, 388 |
| Hpy8I | GTNNAC | 2 cut(s) | 259, 445 |
| HpyAV | CCTTC | 2 cut(s) | 85, 420 |
| HpyCH4III | ACNGT | 3 cut(s) | 133, 196, 263 |
| HpyCH4IV | ACGT | 1 cut(s) | 450 |
| HpyCH4V | TGCA | 2 cut(s) | 31, 107 |
| HpyF3I | CTNAG | 1 cut(s) | 15 |
| HpySE526I | ACGT | 1 cut(s) | 450 |
| Hsp92II | CATG | 3 cut(s) | 115, 391, 406 |
| HspAI | GCGC | 2 cut(s) | 67, 382 |
| Kzo9I | GATC | 3 cut(s) | 162, 208, 406 |
| LmnI | GCTCC | 1 cut(s) | 125 |
| LweI | GCATC | 1 cut(s) | 369 |
| MaeI | CTAG | 1 cut(s) | 62 |
| MaeII | ACGT | 1 cut(s) | 450 |
| MalI | GATC | 3 cut(s) | 164, 210, 408 |
| MboI | GATC | 3 cut(s) | 162, 208, 406 |
| MboII | GAAGA | 4 cut(s) | 128, 251, 439, 445 |
| MfeI | CAATTG | 1 cut(s) | 39 |
| MflI | RGATCY | 3 cut(s) | 162, 208, 406 |
| MluCI | AATT | 5 cut(s) | 39, 101, 273, 280, 457 |
| MnlI | CCTC | 6 cut(s) | 24, 43, 89, 222, 235, 384 |
| MseI | TTAA | 1 cut(s) | 464 |
| MslI | CAYNNNNRTG | 1 cut(s) | 401 |
| MspCI | CTTAAG | 1 cut(s) | 463 |
| MspR9I | CCNGG | 2 cut(s) | 219, 300 |
| MunI | CAATTG | 1 cut(s) | 39 |
| Mva1269I | GAATGC | 1 cut(s) | 368 |
| MvaI | CCWGG | 2 cut(s) | 219, 300 |
| MvnI | CGCG | 1 cut(s) | 69 |
| NdeII | GATC | 3 cut(s) | 162, 208, 406 |
| NlaIII | CATG | 3 cut(s) | 115, 391, 406 |
| NlaIV | GGNNCC | 3 cut(s) | 127, 210, 408 |
| PagI | TCATGA | 1 cut(s) | 387 |
| PctI | GAATGC | 1 cut(s) | 368 |
| PsiI | TTATAA | 1 cut(s) | 279 |
| Psp6I | CCWGG | 2 cut(s) | 217, 298 |
| PspFI | CCCAGC | 1 cut(s) | 350 |
| PspGI | CCWGG | 2 cut(s) | 217, 298 |
| PspN4I | GGNNCC | 3 cut(s) | 127, 210, 408 |
| PsuI | RGATCY | 3 cut(s) | 162, 208, 406 |
| RsaI | GTAC | 1 cut(s) | 481 |
| RsaNI | GTAC | 1 cut(s) | 480 |
| RseI | CAYNNNNRTG | 1 cut(s) | 401 |
| SaqAI | TTAA | 1 cut(s) | 464 |
| Sau3AI | GATC | 3 cut(s) | 162, 208, 406 |
| ScaI | AGTACT | 1 cut(s) | 481 |
| ScrFI | CCNGG | 2 cut(s) | 219, 300 |
| SetI | ASST | 3 cut(s) | 54, 77, 453 |
| SfaNI | GCATC | 1 cut(s) | 369 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 401 |
| SmlI | CTYRAG | 1 cut(s) | 463 |
| SmoI | CTYRAG | 1 cut(s) | 463 |
| Sse9I | AATT | 5 cut(s) | 39, 101, 273, 280, 457 |
| SsiI | CCGC | 1 cut(s) | 366 |
| SspMI | CTAG | 1 cut(s) | 62 |
| StyD4I | CCNGG | 2 cut(s) | 217, 298 |
| StyI | CCWWGG | 1 cut(s) | 414 |
| TaaI | ACNGT | 3 cut(s) | 133, 196, 263 |
| TaiI | ACGT | 1 cut(s) | 453 |
| TaqI | TCGA | 1 cut(s) | 360 |
| TasI | AATT | 5 cut(s) | 39, 101, 273, 280, 457 |
| TatI | WGTACW | 1 cut(s) | 479 |
| Tru1I | TTAA | 1 cut(s) | 464 |
| Tru9I | TTAA | 1 cut(s) | 464 |
| TscAI | CASTG | 2 cut(s) | 136, 268 |
| TspDTI | ATGAA | 2 cut(s) | 252, 376 |
| TspRI | CASTG | 2 cut(s) | 136, 268 |
| Vha464I | CTTAAG | 1 cut(s) | 463 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 216 |
| XapI | RAATTY | 1 cut(s) | 273 |
| XbaI | TCTAGA | 1 cut(s) | 61 |
| XspI | CTAG | 1 cut(s) | 62 |
| ZrmI | AGTACT | 1 cut(s) | 481 |