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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 604 |
| AccII | CGCG | 1 cut(s) | 711 |
| AccIII | TCCGGA | 1 cut(s) | 1299 |
| AciI | CCGC | 1 cut(s) | 1179 |
| AclWI | GGATC | 6 cut(s) | 266, 351, 1016, 1029, 1214, 1227 |
| AcuI | CTGAAG | 2 cut(s) | 750, 902 |
| AcyI | GRCGYC | 1 cut(s) | 605 |
| AfaI | GTAC | 1 cut(s) | 797 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 658, 1031, 1229 |
| AflII | CTTAAG | 1 cut(s) | 184 |
| AgsI | TTSAA | 6 cut(s) | 73, 115, 140, 578, 594, 814 |
| AjnI | CCWGG | 4 cut(s) | 22, 961, 1030, 1260 |
| AluBI | AGCT | 7 cut(s) | 99, 247, 332, 336, 770, 911, 1268 |
| AluI | AGCT | 7 cut(s) | 99, 247, 332, 336, 770, 911, 1268 |
| Alw26I | GTCTC | 1 cut(s) | 140 |
| AlwI | GGATC | 6 cut(s) | 266, 351, 1016, 1029, 1214, 1227 |
| Ama87I | CYCGRG | 2 cut(s) | 14, 1107 |
| Aor13HI | TCCGGA | 1 cut(s) | 1299 |
| AoxI | GGCC | 4 cut(s) | 10, 180, 964, 1056 |
| ApaI | GGGCCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 2 cut(s) | 336, 908 |
| AseI | ATTAAT | 1 cut(s) | 257 |
| AspLEI | GCGC | 3 cut(s) | 607, 711, 1197 |
| AspS9I | GGNCC | 2 cut(s) | 10, 11 |
| AsuHPI | GGTGA | 5 cut(s) | 43, 106, 359, 716, 944 |
| AsuNHI | GCTAGC | 1 cut(s) | 332 |
| AvaI | CYCGRG | 2 cut(s) | 14, 1107 |
| AxyI | CCTNAGG | 1 cut(s) | 657 |
| BaeGI | GKGCMC | 1 cut(s) | 14 |
| BamHI | GGATCC | 2 cut(s) | 1021, 1219 |
| BanI | GGYRCC | 1 cut(s) | 604 |
| BanII | GRGCYC | 1 cut(s) | 14 |
| BbsI | GAAGAC | 1 cut(s) | 929 |
| BbvI | GCAGC | 2 cut(s) | 323, 920 |
| BccI | CCATC | 3 cut(s) | 151, 184, 616 |
| BceAI | ACGGC | 1 cut(s) | 951 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 634, 668 |
| BciT130I | CCWGG | 4 cut(s) | 24, 963, 1032, 1262 |
| BcoDI | GTCTC | 1 cut(s) | 140 |
| BfaI | CTAG | 2 cut(s) | 198, 333 |
| BfmI | CTRYAG | 1 cut(s) | 858 |
| BfoI | RGCGCY | 1 cut(s) | 608 |
| BfrI | CTTAAG | 1 cut(s) | 184 |
| BisI | GCNGC | 2 cut(s) | 337, 909 |
| BlsI | GCNGC | 2 cut(s) | 338, 910 |
| Bme1390I | CCNGG | 4 cut(s) | 24, 963, 1032, 1262 |
| BmeT110I | CYCGRG | 2 cut(s) | 14, 1107 |
| BmgT120I | GGNCC | 2 cut(s) | 10, 11 |
| BmiI | GGNNCC | 5 cut(s) | 12, 13, 606, 1023, 1221 |
| BmrFI | CCNGG | 4 cut(s) | 24, 963, 1032, 1262 |
| BmsI | GCATC | 3 cut(s) | 28, 939, 1182 |
| BmtI | GCTAGC | 1 cut(s) | 336 |
| BpiI | GAAGAC | 1 cut(s) | 929 |
| BpmI | CTGGAG | 1 cut(s) | 363 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| BsaHI | GRCGYC | 1 cut(s) | 605 |
| BsaJI | CCNNGG | 3 cut(s) | 59, 1227, 1251 |
| BsaWI | WCCGGW | 1 cut(s) | 1299 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 336, 366, 759, 789 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 658, 1031, 1229 |
| Bse21I | CCTNAGG | 1 cut(s) | 657 |
| Bse3DI | GCAATG | 1 cut(s) | 1174 |
| BseAI | TCCGGA | 1 cut(s) | 1299 |
| BseBI | CCWGG | 4 cut(s) | 24, 963, 1032, 1262 |
| BseDI | CCNNGG | 3 cut(s) | 59, 1227, 1251 |
| BseGI | GGATG | 3 cut(s) | 19, 195, 379 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 658, 1031, 1229 |
| BseMI | GCAATG | 1 cut(s) | 1174 |
| BseMII | CTCAG | 4 cut(s) | 213, 230, 648, 1158 |
| BseSI | GKGCMC | 1 cut(s) | 14 |
| BseXI | GCAGC | 2 cut(s) | 323, 920 |
| BseYI | CCCAGC | 1 cut(s) | 1163 |
| BsgI | GTGCAG | 1 cut(s) | 850 |
| Bsh1236I | CGCG | 1 cut(s) | 711 |
| Bsh1285I | CGRYCG | 1 cut(s) | 109 |
| BshFI | GGCC | 4 cut(s) | 12, 182, 966, 1058 |
| BshNI | GGYRCC | 1 cut(s) | 604 |
| BsiEI | CGRYCG | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 2 cut(s) | 14, 1107 |
| BsiSI | CCGG | 1 cut(s) | 1300 |
| BslFI | GGGAC | 1 cut(s) | 1220 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 658, 1031, 1229 |
| BsmAI | GTCTC | 1 cut(s) | 140 |
| BsmFI | GGGAC | 1 cut(s) | 1220 |
| BsmI | GAATGC | 1 cut(s) | 1181 |
| BsnI | GGCC | 4 cut(s) | 12, 182, 966, 1058 |
| BsoBI | CYCGRG | 2 cut(s) | 14, 1107 |
| Bsp120I | GGGCCC | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp13I | TCCGGA | 1 cut(s) | 1299 |
| Bsp143I | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| BspACI | CCGC | 1 cut(s) | 1179 |
| BspANI | GGCC | 4 cut(s) | 12, 182, 966, 1058 |
| BspCNI | CTCAG | 4 cut(s) | 214, 231, 649, 1157 |
| BspEI | TCCGGA | 1 cut(s) | 1299 |
| BspFNI | CGCG | 1 cut(s) | 711 |
| BspHI | TCATGA | 2 cut(s) | 945, 1200 |
| BspLI | GGNNCC | 5 cut(s) | 12, 13, 606, 1023, 1221 |
| BspOI | GCTAGC | 1 cut(s) | 336 |
| BspPI | GGATC | 6 cut(s) | 266, 351, 1016, 1029, 1214, 1227 |
| BspT107I | GGYRCC | 1 cut(s) | 604 |
| BspTI | CTTAAG | 1 cut(s) | 184 |
| BsrDI | GCAATG | 1 cut(s) | 1174 |
| BssECI | CCNNGG | 3 cut(s) | 59, 1227, 1251 |
| BssMI | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| BssNI | GRCGYC | 1 cut(s) | 605 |
| BssT1I | CCWWGG | 3 cut(s) | 59, 1227, 1251 |
| Bst2UI | CCWGG | 4 cut(s) | 24, 963, 1032, 1262 |
| Bst4CI | ACNGT | 7 cut(s) | 110, 670, 775, 862, 932, 1009, 1076 |
| Bst6I | CTCTTC | 8 cut(s) | 138, 171, 405, 432, 459, 486, 513, 1047 |
| BstACI | GRCGYC | 1 cut(s) | 605 |
| BstAFI | CTTAAG | 1 cut(s) | 184 |
| BstC8I | GCNNGC | 3 cut(s) | 281, 334, 751 |
| BstDEI | CTNAG | 5 cut(s) | 165, 222, 239, 657, 1144 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 656, 1029 |
| BstF5I | GGATG | 3 cut(s) | 19, 195, 379 |
| BstFNI | CGCG | 1 cut(s) | 711 |
| BstH2I | RGCGCY | 1 cut(s) | 608 |
| BstHHI | GCGC | 3 cut(s) | 607, 711, 1197 |
| BstKTI | GATC | 5 cut(s) | 274, 359, 896, 1024, 1222 |
| BstMAI | GTCTC | 1 cut(s) | 140 |
| BstMBI | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| BstMCI | CGRYCG | 1 cut(s) | 109 |
| BstNI | CCWGG | 4 cut(s) | 24, 963, 1032, 1262 |
| BstNSI | RCATGY | 1 cut(s) | 283 |
| BstSCI | CCNGG | 4 cut(s) | 22, 961, 1030, 1260 |
| BstSFI | CTRYAG | 1 cut(s) | 858 |
| BstSLI | GKGCMC | 1 cut(s) | 14 |
| BstUI | CGCG | 1 cut(s) | 711 |
| BstV1I | GCAGC | 2 cut(s) | 323, 920 |
| BstV2I | GAAGAC | 1 cut(s) | 929 |
| BstX2I | RGATCY | 3 cut(s) | 356, 1021, 1219 |
| BstYI | RGATCY | 3 cut(s) | 356, 1021, 1219 |
| Bsu36I | CCTNAGG | 1 cut(s) | 657 |
| BsuRI | GGCC | 4 cut(s) | 12, 182, 966, 1058 |
| BtsCI | GGATG | 3 cut(s) | 19, 195, 379 |
| BtsIMutI | CAGTG | 1 cut(s) | 1081 |
| Cac8I | GCNNGC | 3 cut(s) | 281, 334, 751 |
| CciI | TCATGA | 2 cut(s) | 945, 1200 |
| CfoI | GCGC | 3 cut(s) | 607, 711, 1197 |
| Cfr13I | GGNCC | 2 cut(s) | 10, 11 |
| Csp6I | GTAC | 1 cut(s) | 796 |
| CviAII | CATG | 6 cut(s) | 280, 560, 754, 946, 1201, 1216 |
| CviQI | GTAC | 1 cut(s) | 796 |
| DdeI | CTNAG | 5 cut(s) | 165, 222, 239, 657, 1144 |
| DinI | GGCGCC | 1 cut(s) | 606 |
| DpnI | GATC | 5 cut(s) | 273, 358, 895, 1023, 1221 |
| DpnII | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| DraI | TTTAAA | 2 cut(s) | 618, 1083 |
| Eam1104I | CTCTTC | 8 cut(s) | 138, 171, 405, 432, 459, 486, 513, 1047 |
| EarI | CTCTTC | 8 cut(s) | 138, 171, 405, 432, 459, 486, 513, 1047 |
| Eco130I | CCWWGG | 3 cut(s) | 59, 1227, 1251 |
| Eco147I | AGGCCT | 1 cut(s) | 182 |
| Eco24I | GRGCYC | 1 cut(s) | 14 |
| Eco57I | CTGAAG | 2 cut(s) | 750, 902 |
| Eco81I | CCTNAGG | 1 cut(s) | 657 |
| Eco88I | CYCGRG | 2 cut(s) | 14, 1107 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 656, 1029 |
| EcoO109I | RGGNCCY | 1 cut(s) | 11 |
| EcoRII | CCWGG | 4 cut(s) | 22, 961, 1030, 1260 |
| EcoT14I | CCWWGG | 3 cut(s) | 59, 1227, 1251 |
| EcoT38I | GRGCYC | 1 cut(s) | 14 |
| EgeI | GGCGCC | 1 cut(s) | 606 |
| EheI | GGCGCC | 1 cut(s) | 606 |
| ErhI | CCWWGG | 3 cut(s) | 59, 1227, 1251 |
| FaeI | CATG | 6 cut(s) | 283, 563, 757, 949, 1204, 1219 |
| FaqI | GGGAC | 1 cut(s) | 1220 |
| FatI | CATG | 6 cut(s) | 279, 559, 753, 945, 1200, 1215 |
| FauI | CCCGC | 1 cut(s) | 1172 |
| Fnu4HI | GCNGC | 2 cut(s) | 337, 909 |
| FokI | GGATG | 3 cut(s) | 6, 202, 386 |
| FriOI | GRGCYC | 1 cut(s) | 14 |
| Fsp4HI | GCNGC | 2 cut(s) | 337, 909 |
| FspBI | CTAG | 2 cut(s) | 198, 333 |
| GlaI | GCGC | 3 cut(s) | 606, 710, 1196 |
| GluI | GCNGC | 2 cut(s) | 337, 909 |
| GsaI | CCCAGC | 1 cut(s) | 1167 |
| GsuI | CTGGAG | 1 cut(s) | 363 |
| HaeII | RGCGCY | 1 cut(s) | 608 |
| HaeIII | GGCC | 4 cut(s) | 12, 182, 966, 1058 |
| HapII | CCGG | 1 cut(s) | 1300 |
| HhaI | GCGC | 3 cut(s) | 607, 711, 1197 |
| Hin1I | GRCGYC | 1 cut(s) | 605 |
| Hin1II | CATG | 6 cut(s) | 283, 563, 757, 949, 1204, 1219 |
| Hin6I | GCGC | 3 cut(s) | 605, 709, 1195 |
| HinP1I | GCGC | 3 cut(s) | 605, 709, 1195 |
| HindIII | AAGCTT | 1 cut(s) | 1266 |
| HinfI | GANTC | 1 cut(s) | 241 |
| HpaII | CCGG | 1 cut(s) | 1300 |
| HphI | GGTGA | 5 cut(s) | 43, 106, 359, 716, 944 |
| Hpy166II | GTNNAC | 2 cut(s) | 935, 1072 |
| Hpy188I | TCNGA | 2 cut(s) | 325, 921 |
| Hpy188III | TCNNGA | 9 cut(s) | 140, 238, 342, 897, 946, 1019, 1069, 1201, 1300 |
| Hpy8I | GTNNAC | 2 cut(s) | 935, 1072 |
| HpyAV | CCTTC | 9 cut(s) | 109, 146, 409, 436, 463, 490, 517, 727, 1233 |
| HpyCH4III | ACNGT | 7 cut(s) | 110, 670, 775, 862, 932, 1009, 1076 |
| HpyCH4IV | ACGT | 1 cut(s) | 1117 |
| HpyCH4V | TGCA | 3 cut(s) | 749, 831, 890 |
| HpyF3I | CTNAG | 5 cut(s) | 165, 222, 239, 657, 1144 |
| HpySE526I | ACGT | 1 cut(s) | 1117 |
| Hsp92I | GRCGYC | 1 cut(s) | 605 |
| Hsp92II | CATG | 6 cut(s) | 283, 563, 757, 949, 1204, 1219 |
| HspAI | GCGC | 3 cut(s) | 605, 709, 1195 |
| KasI | GGCGCC | 1 cut(s) | 604 |
| Kpn2I | TCCGGA | 1 cut(s) | 1299 |
| Kzo9I | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| LmnI | GCTCC | 2 cut(s) | 229, 767 |
| Lsp1109I | GCAGC | 2 cut(s) | 323, 920 |
| LweI | GCATC | 3 cut(s) | 28, 939, 1182 |
| MaeI | CTAG | 2 cut(s) | 198, 333 |
| MaeII | ACGT | 1 cut(s) | 1117 |
| MalI | GATC | 5 cut(s) | 273, 358, 895, 1023, 1221 |
| MboI | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| MfeI | CAATTG | 2 cut(s) | 209, 681 |
| MflI | RGATCY | 3 cut(s) | 356, 1021, 1219 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| Mly113I | GGCGCC | 1 cut(s) | 605 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MroI | TCCGGA | 1 cut(s) | 1299 |
| MseI | TTAA | 7 cut(s) | 125, 185, 257, 285, 617, 1082, 1335 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1214 |
| MspCI | CTTAAG | 1 cut(s) | 184 |
| MspI | CCGG | 1 cut(s) | 1300 |
| MspR9I | CCNGG | 4 cut(s) | 24, 963, 1032, 1262 |
| MunI | CAATTG | 2 cut(s) | 209, 681 |
| Mva1269I | GAATGC | 1 cut(s) | 1181 |
| MvaI | CCWGG | 4 cut(s) | 24, 963, 1032, 1262 |
| MvnI | CGCG | 1 cut(s) | 711 |
| NarI | GGCGCC | 1 cut(s) | 605 |
| NdeII | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| NheI | GCTAGC | 1 cut(s) | 332 |
| NlaIII | CATG | 6 cut(s) | 283, 563, 757, 949, 1204, 1219 |
| NlaIV | GGNNCC | 5 cut(s) | 12, 13, 606, 1023, 1221 |
| NspI | RCATGY | 1 cut(s) | 283 |
| PaeI | GCATGC | 1 cut(s) | 283 |
| PagI | TCATGA | 2 cut(s) | 945, 1200 |
| PceI | AGGCCT | 1 cut(s) | 182 |
| PctI | GAATGC | 1 cut(s) | 1181 |
| PkrI | GCNGC | 2 cut(s) | 338, 910 |
| PleI | GAGTC | 1 cut(s) | 249 |
| PluTI | GGCGCC | 1 cut(s) | 608 |
| PpsI | GAGTC | 1 cut(s) | 249 |
| PshBI | ATTAAT | 1 cut(s) | 257 |
| Psp6I | CCWGG | 4 cut(s) | 22, 961, 1030, 1260 |
| PspFI | CCCAGC | 1 cut(s) | 1163 |
| PspGI | CCWGG | 4 cut(s) | 22, 961, 1030, 1260 |
| PspN4I | GGNNCC | 5 cut(s) | 12, 13, 606, 1023, 1221 |
| PspOMI | GGGCCC | 1 cut(s) | 10 |
| PspPI | GGNCC | 2 cut(s) | 10, 11 |
| PsuI | RGATCY | 3 cut(s) | 356, 1021, 1219 |
| RsaI | GTAC | 1 cut(s) | 797 |
| RsaNI | GTAC | 1 cut(s) | 796 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1214 |
| SaqAI | TTAA | 7 cut(s) | 125, 185, 257, 285, 617, 1082, 1335 |
| SatI | GCNGC | 2 cut(s) | 337, 909 |
| Sau3AI | GATC | 5 cut(s) | 271, 356, 893, 1021, 1219 |
| Sau96I | GGNCC | 2 cut(s) | 10, 11 |
| SchI | GAGTC | 1 cut(s) | 250 |
| ScrFI | CCNGG | 4 cut(s) | 24, 963, 1032, 1262 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfaNI | GCATC | 3 cut(s) | 28, 939, 1182 |
| SfcI | CTRYAG | 1 cut(s) | 858 |
| SfoI | GGCGCC | 1 cut(s) | 606 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1214 |
| SmlI | CTYRAG | 1 cut(s) | 184 |
| SmoI | CTYRAG | 1 cut(s) | 184 |
| SphI | GCATGC | 1 cut(s) | 283 |
| SseBI | AGGCCT | 1 cut(s) | 182 |
| SsiI | CCGC | 1 cut(s) | 1179 |
| SspDI | GGCGCC | 1 cut(s) | 604 |
| SspI | AATATT | 1 cut(s) | 68 |
| SspMI | CTAG | 2 cut(s) | 198, 333 |
| StuI | AGGCCT | 1 cut(s) | 182 |
| StyD4I | CCNGG | 4 cut(s) | 22, 961, 1030, 1260 |
| StyI | CCWWGG | 3 cut(s) | 59, 1227, 1251 |
| TaaI | ACNGT | 7 cut(s) | 110, 670, 775, 862, 932, 1009, 1076 |
| TaiI | ACGT | 1 cut(s) | 1120 |
| TaqI | TCGA | 4 cut(s) | 849, 913, 1047, 1173 |
| Tru1I | TTAA | 7 cut(s) | 125, 185, 257, 285, 617, 1082, 1335 |
| Tru9I | TTAA | 7 cut(s) | 125, 185, 257, 285, 617, 1082, 1335 |
| TscAI | CASTG | 1 cut(s) | 1081 |
| TseI | GCWGC | 2 cut(s) | 336, 908 |
| TspRI | CASTG | 1 cut(s) | 1081 |
| Vha464I | CTTAAG | 1 cut(s) | 184 |
| VspI | ATTAAT | 1 cut(s) | 257 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 656, 1029 |
| XceI | RCATGY | 1 cut(s) | 283 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 969 |
| XspI | CTAG | 2 cut(s) | 198, 333 |