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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 789 |
| Acc36I | ACCTGC | 1 cut(s) | 147 |
| Acc65I | GGTACC | 1 cut(s) | 762 |
| AccB1I | GGYRCC | 2 cut(s) | 565, 762 |
| AciI | CCGC | 3 cut(s) | 1146, 1238, 1344 |
| AclWI | GGATC | 2 cut(s) | 425, 438 |
| AcoI | YGGCCR | 2 cut(s) | 555, 1366 |
| AcsI | RAATTY | 4 cut(s) | 78, 545, 1105, 1374 |
| AcuI | CTGAAG | 1 cut(s) | 678 |
| AfaI | GTAC | 2 cut(s) | 764, 1151 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 235 |
| AflIII | ACRYGT | 1 cut(s) | 1194 |
| AgsI | TTSAA | 7 cut(s) | 95, 254, 392, 545, 589, 622, 781 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 327 |
| AjnI | CCWGG | 1 cut(s) | 901 |
| AluBI | AGCT | 6 cut(s) | 8, 74, 356, 494, 581, 1359 |
| AluI | AGCT | 6 cut(s) | 8, 74, 356, 494, 581, 1359 |
| AlwI | GGATC | 2 cut(s) | 425, 438 |
| AoxI | GGCC | 4 cut(s) | 555, 864, 1308, 1366 |
| ApeKI | GCWGC | 3 cut(s) | 919, 1340, 1385 |
| ApoI | RAATTY | 4 cut(s) | 78, 545, 1105, 1374 |
| Asp718I | GGTACC | 1 cut(s) | 762 |
| AspA2I | CCTAGG | 1 cut(s) | 173 |
| AspLEI | GCGC | 1 cut(s) | 1319 |
| AspS9I | GGNCC | 4 cut(s) | 38, 865, 991, 1309 |
| AsuHPI | GGTGA | 4 cut(s) | 620, 947, 1268, 1301 |
| AvaII | GGWCC | 2 cut(s) | 38, 991 |
| AvrII | CCTAGG | 1 cut(s) | 173 |
| BalI | TGGCCA | 2 cut(s) | 557, 1368 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BanI | GGYRCC | 2 cut(s) | 565, 762 |
| BbsI | GAAGAC | 1 cut(s) | 1266 |
| BbvCI | CCTCAGC | 1 cut(s) | 357 |
| BbvI | GCAGC | 3 cut(s) | 906, 1327, 1397 |
| BccI | CCATC | 6 cut(s) | 62, 122, 461, 514, 577, 620 |
| BceAI | ACGGC | 1 cut(s) | 1304 |
| BciT130I | CCWGG | 1 cut(s) | 903 |
| BclI | TGATCA | 1 cut(s) | 937 |
| BfaI | CTAG | 3 cut(s) | 174, 461, 1131 |
| BfmI | CTRYAG | 1 cut(s) | 1327 |
| BfuAI | ACCTGC | 1 cut(s) | 147 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 563 |
| BisI | GCNGC | 4 cut(s) | 920, 1341, 1344, 1386 |
| BlnI | CCTAGG | 1 cut(s) | 173 |
| BlsI | GCNGC | 4 cut(s) | 921, 1342, 1345, 1387 |
| Bme1390I | CCNGG | 1 cut(s) | 903 |
| Bme18I | GGWCC | 2 cut(s) | 38, 991 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 327 |
| BmgT120I | GGNCC | 4 cut(s) | 38, 865, 991, 1309 |
| BmiI | GGNNCC | 6 cut(s) | 285, 432, 567, 654, 764, 993 |
| BmrFI | CCNGG | 1 cut(s) | 903 |
| BmsI | GCATC | 3 cut(s) | 315, 604, 1291 |
| BpiI | GAAGAC | 1 cut(s) | 1266 |
| BpmI | CTGGAG | 1 cut(s) | 986 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| BpuEI | CTTGAG | 2 cut(s) | 6, 230 |
| BsaBI | GATNNNNATC | 2 cut(s) | 275, 1031 |
| BsaJI | CCNNGG | 5 cut(s) | 173, 483, 902, 1212, 1279 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1133, 1163 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 235 |
| Bse1I | ACTGG | 1 cut(s) | 739 |
| Bse3DI | GCAATG | 1 cut(s) | 744 |
| Bse8I | GATNNNNATC | 2 cut(s) | 275, 1031 |
| BseBI | CCWGG | 1 cut(s) | 903 |
| BseDI | CCNNGG | 5 cut(s) | 173, 483, 902, 1212, 1279 |
| BseGI | GGATG | 6 cut(s) | 73, 253, 472, 619, 1032, 1303 |
| BseJI | GATNNNNATC | 2 cut(s) | 275, 1031 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BseMI | GCAATG | 1 cut(s) | 744 |
| BseMII | CTCAG | 3 cut(s) | 74, 348, 945 |
| BseNI | ACTGG | 1 cut(s) | 739 |
| BseRI | GAGGAG | 1 cut(s) | 311 |
| BseXI | GCAGC | 3 cut(s) | 906, 1327, 1397 |
| BshFI | GGCC | 4 cut(s) | 557, 866, 1310, 1368 |
| BshNI | GGYRCC | 2 cut(s) | 565, 762 |
| BsiSI | CCGG | 1 cut(s) | 287 |
| BslFI | GGGAC | 1 cut(s) | 148 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BsmFI | GGGAC | 1 cut(s) | 148 |
| BsmI | GAATGC | 2 cut(s) | 617, 1116 |
| BsnI | GGCC | 4 cut(s) | 557, 866, 1310, 1368 |
| Bsp143I | GATC | 3 cut(s) | 430, 937, 961 |
| BspACI | CCGC | 3 cut(s) | 1146, 1238, 1344 |
| BspANI | GGCC | 4 cut(s) | 557, 866, 1310, 1368 |
| BspCNI | CTCAG | 3 cut(s) | 75, 349, 944 |
| BspLI | GGNNCC | 6 cut(s) | 285, 432, 567, 654, 764, 993 |
| BspMI | ACCTGC | 1 cut(s) | 147 |
| BspPI | GGATC | 2 cut(s) | 425, 438 |
| BspT107I | GGYRCC | 2 cut(s) | 565, 762 |
| BsrDI | GCAATG | 1 cut(s) | 744 |
| BsrI | ACTGG | 1 cut(s) | 739 |
| BssECI | CCNNGG | 5 cut(s) | 173, 483, 902, 1212, 1279 |
| BssMI | GATC | 3 cut(s) | 430, 937, 961 |
| BssT1I | CCWWGG | 3 cut(s) | 173, 483, 1212 |
| Bst2UI | CCWGG | 1 cut(s) | 903 |
| Bst4CI | ACNGT | 7 cut(s) | 230, 415, 859, 1232, 1256, 1283, 1331 |
| Bst6I | CTCTTC | 1 cut(s) | 522 |
| BstC8I | GCNNGC | 3 cut(s) | 579, 718, 1114 |
| BstDEI | CTNAG | 3 cut(s) | 83, 357, 931 |
| BstDSI | CCRYGG | 1 cut(s) | 1279 |
| BstF5I | GGATG | 6 cut(s) | 73, 253, 472, 619, 1032, 1303 |
| BstHHI | GCGC | 1 cut(s) | 1319 |
| BstKTI | GATC | 3 cut(s) | 433, 940, 964 |
| BstMBI | GATC | 3 cut(s) | 430, 937, 961 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 563, 1316, 1349, 1365 |
| BstNI | CCWGG | 1 cut(s) | 903 |
| BstNSI | RCATGY | 1 cut(s) | 1198 |
| BstSCI | CCNGG | 1 cut(s) | 901 |
| BstSFI | CTRYAG | 1 cut(s) | 1327 |
| BstV1I | GCAGC | 3 cut(s) | 906, 1327, 1397 |
| BstV2I | GAAGAC | 1 cut(s) | 1266 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 418, 1286 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BsuRI | GGCC | 4 cut(s) | 557, 866, 1310, 1368 |
| BtgI | CCRYGG | 1 cut(s) | 1279 |
| BtsCI | GGATG | 6 cut(s) | 73, 253, 472, 619, 1032, 1303 |
| BtsIMutI | CAGTG | 2 cut(s) | 411, 1336 |
| BveI | ACCTGC | 1 cut(s) | 147 |
| Cac8I | GCNNGC | 3 cut(s) | 579, 718, 1114 |
| CfoI | GCGC | 1 cut(s) | 1319 |
| Cfr13I | GGNCC | 4 cut(s) | 38, 865, 991, 1309 |
| CseI | GACGC | 4 cut(s) | 317, 1014, 1271, 1346 |
| Csp6I | GTAC | 2 cut(s) | 763, 1150 |
| CviQI | GTAC | 2 cut(s) | 763, 1150 |
| DdeI | CTNAG | 3 cut(s) | 83, 357, 931 |
| DpnI | GATC | 3 cut(s) | 432, 939, 963 |
| DpnII | GATC | 3 cut(s) | 430, 937, 961 |
| DriI | GACNNNNNGTC | 1 cut(s) | 327 |
| EaeI | YGGCCR | 2 cut(s) | 555, 1366 |
| Eam1104I | CTCTTC | 1 cut(s) | 522 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 327 |
| EarI | CTCTTC | 1 cut(s) | 522 |
| Eco130I | CCWWGG | 3 cut(s) | 173, 483, 1212 |
| Eco32I | GATATC | 2 cut(s) | 277, 1177 |
| Eco47I | GGWCC | 2 cut(s) | 38, 991 |
| Eco57I | CTGAAG | 1 cut(s) | 678 |
| EcoRII | CCWGG | 1 cut(s) | 901 |
| EcoRV | GATATC | 2 cut(s) | 277, 1177 |
| EcoT14I | CCWWGG | 3 cut(s) | 173, 483, 1212 |
| EcoT22I | ATGCAT | 1 cut(s) | 619 |
| ErhI | CCWWGG | 3 cut(s) | 173, 483, 1212 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 870, 902 |
| FaqI | GGGAC | 1 cut(s) | 148 |
| FauI | CCCGC | 1 cut(s) | 1139 |
| FbaI | TGATCA | 1 cut(s) | 937 |
| Fnu4HI | GCNGC | 4 cut(s) | 920, 1341, 1344, 1386 |
| FokI | GGATG | 6 cut(s) | 80, 260, 479, 626, 1039, 1310 |
| Fsp4HI | GCNGC | 4 cut(s) | 920, 1341, 1344, 1386 |
| FspBI | CTAG | 3 cut(s) | 174, 461, 1131 |
| GlaI | GCGC | 1 cut(s) | 1318 |
| GluI | GCNGC | 4 cut(s) | 920, 1341, 1344, 1386 |
| GsuI | CTGGAG | 1 cut(s) | 986 |
| HaeIII | GGCC | 4 cut(s) | 557, 866, 1310, 1368 |
| HapII | CCGG | 1 cut(s) | 287 |
| HgaI | GACGC | 4 cut(s) | 317, 1014, 1271, 1346 |
| HhaI | GCGC | 1 cut(s) | 1319 |
| Hin6I | GCGC | 1 cut(s) | 1317 |
| HinP1I | GCGC | 1 cut(s) | 1317 |
| HincII | GTYRAC | 4 cut(s) | 226, 332, 817, 951 |
| HindII | GTYRAC | 4 cut(s) | 226, 332, 817, 951 |
| HinfI | GANTC | 2 cut(s) | 533, 1275 |
| HpaII | CCGG | 1 cut(s) | 287 |
| HphI | GGTGA | 4 cut(s) | 620, 947, 1268, 1301 |
| Hpy166II | GTNNAC | 6 cut(s) | 58, 226, 332, 817, 951, 1252 |
| Hpy188I | TCNGA | 4 cut(s) | 84, 538, 1066, 1086 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 209, 965 |
| Hpy8I | GTNNAC | 6 cut(s) | 58, 226, 332, 817, 951, 1252 |
| Hpy99I | CGWCG | 3 cut(s) | 1040, 1325, 1340 |
| HpyAV | CCTTC | 5 cut(s) | 146, 444, 775, 831, 1218 |
| HpyCH4III | ACNGT | 7 cut(s) | 230, 415, 859, 1232, 1256, 1283, 1331 |
| HpyCH4IV | ACGT | 1 cut(s) | 351 |
| HpyCH4V | TGCA | 6 cut(s) | 180, 369, 617, 716, 744, 809 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 563, 1316, 1349, 1365 |
| HpyF3I | CTNAG | 3 cut(s) | 83, 357, 931 |
| HpySE526I | ACGT | 1 cut(s) | 351 |
| HspAI | GCGC | 1 cut(s) | 1317 |
| KpnI | GGTACC | 1 cut(s) | 766 |
| Ksp22I | TGATCA | 1 cut(s) | 937 |
| Kzo9I | GATC | 3 cut(s) | 430, 937, 961 |
| LmnI | GCTCC | 4 cut(s) | 71, 283, 652, 1364 |
| Lsp1109I | GCAGC | 3 cut(s) | 906, 1327, 1397 |
| LweI | GCATC | 3 cut(s) | 315, 604, 1291 |
| MaeI | CTAG | 3 cut(s) | 174, 461, 1131 |
| MaeII | ACGT | 1 cut(s) | 351 |
| MaeIII | GTNAC | 2 cut(s) | 730, 889 |
| MalI | GATC | 3 cut(s) | 432, 939, 963 |
| MboI | GATC | 3 cut(s) | 430, 937, 961 |
| MboII | GAAGA | 8 cut(s) | 59, 107, 266, 514, 517, 539, 601, 1271 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MlsI | TGGCCA | 2 cut(s) | 557, 1368 |
| MluCI | AATT | 5 cut(s) | 78, 545, 560, 1105, 1374 |
| MluNI | TGGCCA | 2 cut(s) | 557, 1368 |
| MlyI | GAGTC | 1 cut(s) | 527 |
| MmeI | TCCRAC | 3 cut(s) | 24, 141, 1064 |
| Mox20I | TGGCCA | 2 cut(s) | 557, 1368 |
| Mph1103I | ATGCAT | 1 cut(s) | 619 |
| MscI | TGGCCA | 2 cut(s) | 557, 1368 |
| MseI | TTAA | 2 cut(s) | 147, 341 |
| MslI | CAYNNNNRTG | 4 cut(s) | 416, 749, 1224, 1284 |
| Msp20I | TGGCCA | 2 cut(s) | 557, 1368 |
| MspI | CCGG | 1 cut(s) | 287 |
| MspR9I | CCNGG | 1 cut(s) | 903 |
| Mva1269I | GAATGC | 2 cut(s) | 617, 1116 |
| MvaI | CCWGG | 1 cut(s) | 903 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 563, 1316, 1349, 1365 |
| NdeII | GATC | 3 cut(s) | 430, 937, 961 |
| NlaIV | GGNNCC | 6 cut(s) | 285, 432, 567, 654, 764, 993 |
| NsiI | ATGCAT | 1 cut(s) | 619 |
| NspI | RCATGY | 1 cut(s) | 1198 |
| PciI | ACATGT | 1 cut(s) | 1194 |
| PctI | GAATGC | 2 cut(s) | 617, 1116 |
| PfeI | GAWTC | 1 cut(s) | 1275 |
| PkrI | GCNGC | 4 cut(s) | 921, 1342, 1345, 1387 |
| PleI | GAGTC | 1 cut(s) | 527 |
| PpsI | GAGTC | 1 cut(s) | 527 |
| PscI | ACATGT | 1 cut(s) | 1194 |
| PsiI | TTATAA | 1 cut(s) | 789 |
| Psp6I | CCWGG | 1 cut(s) | 901 |
| PspGI | CCWGG | 1 cut(s) | 901 |
| PspN4I | GGNNCC | 6 cut(s) | 285, 432, 567, 654, 764, 993 |
| PspPI | GGNCC | 4 cut(s) | 38, 865, 991, 1309 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| RsaI | GTAC | 2 cut(s) | 764, 1151 |
| RsaNI | GTAC | 2 cut(s) | 763, 1150 |
| RseI | CAYNNNNRTG | 4 cut(s) | 416, 749, 1224, 1284 |
| SaqAI | TTAA | 2 cut(s) | 147, 341 |
| SatI | GCNGC | 4 cut(s) | 920, 1341, 1344, 1386 |
| Sau3AI | GATC | 3 cut(s) | 430, 937, 961 |
| Sau96I | GGNCC | 4 cut(s) | 38, 865, 991, 1309 |
| SchI | GAGTC | 1 cut(s) | 527 |
| ScrFI | CCNGG | 1 cut(s) | 903 |
| SfaNI | GCATC | 3 cut(s) | 315, 604, 1291 |
| SfcI | CTRYAG | 1 cut(s) | 1327 |
| SinI | GGWCC | 2 cut(s) | 38, 991 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 416, 749, 1224, 1284 |
| SmlI | CTYRAG | 2 cut(s) | 21, 209 |
| SmoI | CTYRAG | 2 cut(s) | 21, 209 |
| Sse9I | AATT | 5 cut(s) | 78, 545, 560, 1105, 1374 |
| SsiI | CCGC | 3 cut(s) | 1146, 1238, 1344 |
| SspMI | CTAG | 3 cut(s) | 174, 461, 1131 |
| StyD4I | CCNGG | 1 cut(s) | 901 |
| StyI | CCWWGG | 3 cut(s) | 173, 483, 1212 |
| TaaI | ACNGT | 7 cut(s) | 230, 415, 859, 1232, 1256, 1283, 1331 |
| TaiI | ACGT | 1 cut(s) | 354 |
| TaqI | TCGA | 2 cut(s) | 1038, 1245 |
| TasI | AATT | 5 cut(s) | 78, 545, 560, 1105, 1374 |
| TauI | GCSGC | 1 cut(s) | 1346 |
| TfiI | GAWTC | 1 cut(s) | 1275 |
| Tru1I | TTAA | 2 cut(s) | 147, 341 |
| Tru9I | TTAA | 2 cut(s) | 147, 341 |
| TscAI | CASTG | 2 cut(s) | 418, 1336 |
| TseI | GCWGC | 3 cut(s) | 919, 1340, 1385 |
| TspDTI | ATGAA | 4 cut(s) | 437, 573, 904, 1085 |
| TspGWI | ACGGA | 2 cut(s) | 30, 44 |
| TspRI | CASTG | 2 cut(s) | 418, 1336 |
| VpaK11BI | GGWCC | 2 cut(s) | 38, 991 |
| XapI | RAATTY | 4 cut(s) | 78, 545, 1105, 1374 |
| XceI | RCATGY | 1 cut(s) | 1198 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 446 |
| XmaJI | CCTAGG | 1 cut(s) | 173 |
| XspI | CTAG | 3 cut(s) | 174, 461, 1131 |
| Zsp2I | ATGCAT | 1 cut(s) | 619 |