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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 463 |
| AccBSI | CCGCTC | 1 cut(s) | 1265 |
| AccIII | TCCGGA | 2 cut(s) | 13, 1117 |
| AciI | CCGC | 4 cut(s) | 168, 197, 653, 1265 |
| AclWI | GGATC | 4 cut(s) | 809, 983, 996, 1252 |
| AcoI | YGGCCR | 3 cut(s) | 428, 664, 711 |
| AcsI | RAATTY | 1 cut(s) | 1225 |
| AcvI | CACGTG | 1 cut(s) | 600 |
| AcyI | GRCGYC | 1 cut(s) | 405 |
| AfaI | GTAC | 3 cut(s) | 415, 741, 832 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 858 |
| AgsI | TTSAA | 7 cut(s) | 83, 263, 554, 672, 778, 1094, 1288 |
| AhlI | ACTAGT | 1 cut(s) | 742 |
| AjnI | CCWGG | 2 cut(s) | 425, 438 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AleI | CACNNNNGTG | 1 cut(s) | 838 |
| AluBI | AGCT | 4 cut(s) | 25, 68, 289, 759 |
| AluI | AGCT | 4 cut(s) | 25, 68, 289, 759 |
| Alw21I | GWGCWC | 4 cut(s) | 27, 599, 937, 981 |
| Alw26I | GTCTC | 4 cut(s) | 138, 179, 334, 615 |
| Alw44I | GTGCAC | 2 cut(s) | 595, 977 |
| AlwI | GGATC | 4 cut(s) | 809, 983, 996, 1252 |
| Aor13HI | TCCGGA | 2 cut(s) | 13, 1117 |
| AoxI | GGCC | 3 cut(s) | 428, 664, 711 |
| ApaLI | GTGCAC | 2 cut(s) | 595, 977 |
| ApeKI | GCWGC | 3 cut(s) | 65, 194, 650 |
| ApoI | RAATTY | 1 cut(s) | 1225 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 611 |
| AspS9I | GGNCC | 1 cut(s) | 655 |
| AsuHPI | GGTGA | 2 cut(s) | 32, 622 |
| AvaII | GGWCC | 1 cut(s) | 655 |
| BaeGI | GKGCMC | 2 cut(s) | 599, 981 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 405, 438 |
| BalI | TGGCCA | 2 cut(s) | 430, 713 |
| BamHI | GGATCC | 1 cut(s) | 988 |
| BanI | GGYRCC | 1 cut(s) | 463 |
| BanII | GRGCYC | 2 cut(s) | 27, 865 |
| BbrPI | CACGTG | 1 cut(s) | 600 |
| BbsI | GAAGAC | 1 cut(s) | 552 |
| Bbv12I | GWGCWC | 4 cut(s) | 27, 599, 937, 981 |
| BbvI | GCAGC | 3 cut(s) | 77, 181, 637 |
| BccI | CCATC | 2 cut(s) | 641, 784 |
| BceAI | ACGGC | 2 cut(s) | 138, 651 |
| BciT130I | CCWGG | 2 cut(s) | 427, 440 |
| BclI | TGATCA | 1 cut(s) | 820 |
| BcoDI | GTCTC | 4 cut(s) | 138, 179, 334, 615 |
| BcuI | ACTAGT | 1 cut(s) | 742 |
| BfaI | CTAG | 4 cut(s) | 453, 722, 743, 786 |
| BfmI | CTRYAG | 1 cut(s) | 246 |
| BglII | AGATCT | 1 cut(s) | 178 |
| BisI | GCNGC | 3 cut(s) | 66, 195, 651 |
| BlpI | GCTNAGC | 1 cut(s) | 1275 |
| BlsI | GCNGC | 3 cut(s) | 67, 196, 652 |
| Bme1390I | CCNGG | 2 cut(s) | 427, 440 |
| Bme18I | GGWCC | 1 cut(s) | 655 |
| BmgT120I | GGNCC | 1 cut(s) | 655 |
| BmiI | GGNNCC | 4 cut(s) | 110, 156, 465, 990 |
| BmrFI | CCNGG | 2 cut(s) | 427, 440 |
| BmrI | ACTGGG | 1 cut(s) | 1023 |
| BmsI | GCATC | 3 cut(s) | 52, 284, 346 |
| BmuI | ACTGGG | 1 cut(s) | 1023 |
| BpiI | GAAGAC | 1 cut(s) | 552 |
| BpmI | CTGGAG | 1 cut(s) | 203 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1275 |
| BsaAI | YACGTR | 1 cut(s) | 600 |
| BsaBI | GATNNNNATC | 1 cut(s) | 819 |
| BsaHI | GRCGYC | 1 cut(s) | 405 |
| BsaJI | CCNNGG | 1 cut(s) | 708 |
| BsaWI | WCCGGW | 2 cut(s) | 13, 1117 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 858 |
| Bse1I | ACTGG | 4 cut(s) | 219, 374, 832, 1018 |
| Bse8I | GATNNNNATC | 1 cut(s) | 819 |
| BseAI | TCCGGA | 2 cut(s) | 13, 1117 |
| BseBI | CCWGG | 2 cut(s) | 427, 440 |
| BseDI | CCNNGG | 1 cut(s) | 708 |
| BseGI | GGATG | 4 cut(s) | 388, 633, 795, 948 |
| BseJI | GATNNNNATC | 1 cut(s) | 819 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 858 |
| BseMII | CTCAG | 3 cut(s) | 345, 942, 1266 |
| BseNI | ACTGG | 4 cut(s) | 219, 374, 832, 1018 |
| BseRI | GAGGAG | 1 cut(s) | 149 |
| BseSI | GKGCMC | 2 cut(s) | 599, 981 |
| BseX3I | CGGCCG | 1 cut(s) | 664 |
| BseXI | GCAGC | 3 cut(s) | 77, 181, 637 |
| Bsh1285I | CGRYCG | 1 cut(s) | 667 |
| BshFI | GGCC | 3 cut(s) | 430, 666, 713 |
| BshNI | GGYRCC | 1 cut(s) | 463 |
| BsiEI | CGRYCG | 1 cut(s) | 667 |
| BsiHKAI | GWGCWC | 4 cut(s) | 27, 599, 937, 981 |
| BsiSI | CCGG | 2 cut(s) | 14, 1118 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 858 |
| BsmAI | GTCTC | 4 cut(s) | 138, 179, 334, 615 |
| BsmBI | CGTCTC | 3 cut(s) | 179, 334, 615 |
| BsnI | GGCC | 3 cut(s) | 430, 666, 713 |
| Bsp1286I | GDGCHC | 5 cut(s) | 27, 599, 865, 937, 981 |
| Bsp13I | TCCGGA | 2 cut(s) | 13, 1117 |
| Bsp143I | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1275 |
| Bsp19I | CCATGG | 1 cut(s) | 708 |
| BspACI | CCGC | 4 cut(s) | 168, 197, 653, 1265 |
| BspANI | GGCC | 3 cut(s) | 430, 666, 713 |
| BspCNI | CTCAG | 3 cut(s) | 344, 941, 1267 |
| BspEI | TCCGGA | 2 cut(s) | 13, 1117 |
| BspHI | TCATGA | 2 cut(s) | 91, 766 |
| BspLI | GGNNCC | 4 cut(s) | 110, 156, 465, 990 |
| BspPI | GGATC | 4 cut(s) | 809, 983, 996, 1252 |
| BspT107I | GGYRCC | 1 cut(s) | 463 |
| BsrBI | CCGCTC | 1 cut(s) | 1265 |
| BsrI | ACTGG | 4 cut(s) | 219, 374, 832, 1018 |
| BssECI | CCNNGG | 1 cut(s) | 708 |
| BssMI | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| BssNI | GRCGYC | 1 cut(s) | 405 |
| BssT1I | CCWWGG | 1 cut(s) | 708 |
| Bst2UI | CCWGG | 2 cut(s) | 427, 440 |
| Bst4CI | ACNGT | 3 cut(s) | 20, 397, 1240 |
| Bst6I | CTCTTC | 3 cut(s) | 35, 78, 509 |
| BstACI | GRCGYC | 1 cut(s) | 405 |
| BstBAI | YACGTR | 1 cut(s) | 600 |
| BstDEI | CTNAG | 4 cut(s) | 331, 617, 928, 1275 |
| BstDSI | CCRYGG | 1 cut(s) | 708 |
| BstEII | GGTNACC | 1 cut(s) | 628 |
| BstF5I | GGATG | 4 cut(s) | 388, 633, 795, 948 |
| BstKTI | GATC | 8 cut(s) | 181, 286, 700, 817, 823, 880, 991, 1260 |
| BstMAI | GTCTC | 4 cut(s) | 138, 179, 334, 615 |
| BstMBI | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| BstMCI | CGRYCG | 1 cut(s) | 667 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1271 |
| BstNI | CCWGG | 2 cut(s) | 427, 440 |
| BstNSI | RCATGY | 1 cut(s) | 1283 |
| BstPI | GGTNACC | 1 cut(s) | 628 |
| BstSCI | CCNGG | 2 cut(s) | 425, 438 |
| BstSFI | CTRYAG | 1 cut(s) | 246 |
| BstSLI | GKGCMC | 2 cut(s) | 599, 981 |
| BstV1I | GCAGC | 3 cut(s) | 77, 181, 637 |
| BstV2I | GAAGAC | 1 cut(s) | 552 |
| BstX2I | RGATCY | 3 cut(s) | 178, 988, 1257 |
| BstYI | RGATCY | 3 cut(s) | 178, 988, 1257 |
| BstZI | CGGCCG | 1 cut(s) | 664 |
| BsuRI | GGCC | 3 cut(s) | 430, 666, 713 |
| BtgI | CCRYGG | 1 cut(s) | 708 |
| BtsCI | GGATG | 4 cut(s) | 388, 633, 795, 948 |
| BtsI | GCAGTG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 4 cut(s) | 39, 381, 393, 852 |
| CciI | TCATGA | 2 cut(s) | 91, 766 |
| Cfr13I | GGNCC | 1 cut(s) | 655 |
| CseI | GACGC | 1 cut(s) | 413 |
| CsiI | ACCWGGT | 1 cut(s) | 438 |
| Csp6I | GTAC | 3 cut(s) | 414, 740, 831 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1123, 1158 |
| CviAII | CATG | 9 cut(s) | 92, 151, 296, 709, 754, 767, 985, 1165, 1280 |
| CviQI | GTAC | 3 cut(s) | 414, 740, 831 |
| DdeI | CTNAG | 4 cut(s) | 331, 617, 928, 1275 |
| DpnI | GATC | 8 cut(s) | 180, 285, 699, 816, 822, 879, 990, 1259 |
| DpnII | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| DraI | TTTAAA | 1 cut(s) | 54 |
| EaeI | YGGCCR | 3 cut(s) | 428, 664, 711 |
| EagI | CGGCCG | 1 cut(s) | 664 |
| Eam1104I | CTCTTC | 3 cut(s) | 35, 78, 509 |
| EarI | CTCTTC | 3 cut(s) | 35, 78, 509 |
| Ecl136II | GAGCTC | 1 cut(s) | 25 |
| EclXI | CGGCCG | 1 cut(s) | 664 |
| Eco130I | CCWWGG | 1 cut(s) | 708 |
| Eco24I | GRGCYC | 2 cut(s) | 27, 865 |
| Eco47I | GGWCC | 1 cut(s) | 655 |
| Eco52I | CGGCCG | 1 cut(s) | 664 |
| Eco53kI | GAGCTC | 1 cut(s) | 25 |
| Eco72I | CACGTG | 1 cut(s) | 600 |
| Eco91I | GGTNACC | 1 cut(s) | 628 |
| EcoICRI | GAGCTC | 1 cut(s) | 25 |
| EcoO65I | GGTNACC | 1 cut(s) | 628 |
| EcoRII | CCWGG | 2 cut(s) | 425, 438 |
| EcoT14I | CCWWGG | 1 cut(s) | 708 |
| EcoT38I | GRGCYC | 2 cut(s) | 27, 865 |
| ErhI | CCWWGG | 1 cut(s) | 708 |
| Esp3I | CGTCTC | 3 cut(s) | 179, 334, 615 |
| FaeI | CATG | 9 cut(s) | 95, 154, 299, 712, 757, 770, 988, 1168, 1283 |
| FatI | CATG | 9 cut(s) | 91, 150, 295, 708, 753, 766, 984, 1164, 1279 |
| FbaI | TGATCA | 1 cut(s) | 820 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 195, 651 |
| FokI | GGATG | 4 cut(s) | 395, 620, 802, 955 |
| FriOI | GRGCYC | 2 cut(s) | 27, 865 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 195, 651 |
| FspBI | CTAG | 4 cut(s) | 453, 722, 743, 786 |
| GluI | GCNGC | 3 cut(s) | 66, 195, 651 |
| GsuI | CTGGAG | 1 cut(s) | 203 |
| HaeIII | GGCC | 3 cut(s) | 430, 666, 713 |
| HapII | CCGG | 2 cut(s) | 14, 1118 |
| HgaI | GACGC | 1 cut(s) | 413 |
| Hin1I | GRCGYC | 1 cut(s) | 405 |
| Hin1II | CATG | 9 cut(s) | 95, 154, 299, 712, 757, 770, 988, 1168, 1283 |
| HincII | GTYRAC | 2 cut(s) | 948, 1036 |
| HindII | GTYRAC | 2 cut(s) | 948, 1036 |
| HinfI | GANTC | 5 cut(s) | 88, 568, 1005, 1069, 1102 |
| HpaII | CCGG | 2 cut(s) | 14, 1118 |
| HphI | GGTGA | 2 cut(s) | 32, 622 |
| Hpy188I | TCNGA | 4 cut(s) | 825, 877, 1074, 1262 |
| Hpy188III | TCNNGA | 8 cut(s) | 14, 92, 101, 182, 767, 775, 818, 1118 |
| Hpy99I | CGWCG | 1 cut(s) | 407 |
| HpyAV | CCTTC | 4 cut(s) | 98, 373, 773, 1074 |
| HpyCH4III | ACNGT | 3 cut(s) | 20, 397, 1240 |
| HpyCH4IV | ACGT | 1 cut(s) | 599 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 32, 65, 202, 275, 597, 979 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1271 |
| HpyF3I | CTNAG | 4 cut(s) | 331, 617, 928, 1275 |
| HpySE526I | ACGT | 1 cut(s) | 599 |
| Hsp92I | GRCGYC | 1 cut(s) | 405 |
| Hsp92II | CATG | 9 cut(s) | 95, 154, 299, 712, 757, 770, 988, 1168, 1283 |
| Kpn2I | TCCGGA | 2 cut(s) | 13, 1117 |
| Ksp22I | TGATCA | 1 cut(s) | 820 |
| Kzo9I | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| LmnI | GCTCC | 2 cut(s) | 160, 1120 |
| Lsp1109I | GCAGC | 3 cut(s) | 77, 181, 637 |
| LweI | GCATC | 3 cut(s) | 52, 284, 346 |
| MabI | ACCWGGT | 1 cut(s) | 438 |
| MaeI | CTAG | 4 cut(s) | 453, 722, 743, 786 |
| MaeII | ACGT | 1 cut(s) | 599 |
| MaeIII | GTNAC | 5 cut(s) | 118, 363, 391, 628, 1160 |
| MalI | GATC | 8 cut(s) | 180, 285, 699, 816, 822, 879, 990, 1259 |
| MbiI | CCGCTC | 1 cut(s) | 1265 |
| MboI | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| MboII | GAAGA | 9 cut(s) | 49, 52, 95, 499, 526, 557, 790, 980, 1111 |
| MflI | RGATCY | 3 cut(s) | 178, 988, 1257 |
| MhlI | GDGCHC | 5 cut(s) | 27, 599, 865, 937, 981 |
| MlsI | TGGCCA | 2 cut(s) | 430, 713 |
| MluCI | AATT | 6 cut(s) | 255, 610, 1089, 1173, 1225, 1300 |
| MluNI | TGGCCA | 2 cut(s) | 430, 713 |
| MlyI | GAGTC | 1 cut(s) | 999 |
| MnlI | CCTC | 6 cut(s) | 36, 127, 130, 888, 1174, 1212 |
| Mox20I | TGGCCA | 2 cut(s) | 430, 713 |
| MroI | TCCGGA | 2 cut(s) | 13, 1117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 611 |
| MscI | TGGCCA | 2 cut(s) | 430, 713 |
| MseI | TTAA | 6 cut(s) | 53, 471, 584, 996, 1047, 1303 |
| MslI | CAYNNNNRTG | 2 cut(s) | 207, 838 |
| Msp20I | TGGCCA | 2 cut(s) | 430, 713 |
| MspA1I | CMGCKG | 2 cut(s) | 68, 289 |
| MspI | CCGG | 2 cut(s) | 14, 1118 |
| MspR9I | CCNGG | 2 cut(s) | 427, 440 |
| MvaI | CCWGG | 2 cut(s) | 427, 440 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1271 |
| NcoI | CCATGG | 1 cut(s) | 708 |
| NdeII | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| NlaIII | CATG | 9 cut(s) | 95, 154, 299, 712, 757, 770, 988, 1168, 1283 |
| NlaIV | GGNNCC | 4 cut(s) | 110, 156, 465, 990 |
| NmuCI | GTSAC | 2 cut(s) | 391, 628 |
| NspI | RCATGY | 1 cut(s) | 1283 |
| OliI | CACNNNNGTG | 1 cut(s) | 838 |
| PagI | TCATGA | 2 cut(s) | 91, 766 |
| PdmI | GAANNNNTTC | 1 cut(s) | 611 |
| PfeI | GAWTC | 4 cut(s) | 88, 568, 1069, 1102 |
| PflFI | GACNNNGTC | 1 cut(s) | 626 |
| PkrI | GCNGC | 3 cut(s) | 67, 196, 652 |
| PleI | GAGTC | 1 cut(s) | 999 |
| PmaCI | CACGTG | 1 cut(s) | 600 |
| PmlI | CACGTG | 1 cut(s) | 600 |
| PpsI | GAGTC | 1 cut(s) | 999 |
| Ppu21I | YACGTR | 1 cut(s) | 600 |
| Psp124BI | GAGCTC | 1 cut(s) | 27 |
| Psp6I | CCWGG | 2 cut(s) | 425, 438 |
| PspCI | CACGTG | 1 cut(s) | 600 |
| PspEI | GGTNACC | 1 cut(s) | 628 |
| PspGI | CCWGG | 2 cut(s) | 425, 438 |
| PspN4I | GGNNCC | 4 cut(s) | 110, 156, 465, 990 |
| PspPI | GGNCC | 1 cut(s) | 655 |
| PsuI | RGATCY | 3 cut(s) | 178, 988, 1257 |
| PsyI | GACNNNGTC | 1 cut(s) | 626 |
| PvuII | CAGCTG | 2 cut(s) | 68, 289 |
| RsaI | GTAC | 3 cut(s) | 415, 741, 832 |
| RsaNI | GTAC | 3 cut(s) | 414, 740, 831 |
| RseI | CAYNNNNRTG | 2 cut(s) | 207, 838 |
| SacI | GAGCTC | 1 cut(s) | 27 |
| SaqAI | TTAA | 6 cut(s) | 53, 471, 584, 996, 1047, 1303 |
| SatI | GCNGC | 3 cut(s) | 66, 195, 651 |
| Sau3AI | GATC | 8 cut(s) | 178, 283, 697, 814, 820, 877, 988, 1257 |
| Sau96I | GGNCC | 1 cut(s) | 655 |
| SchI | GAGTC | 1 cut(s) | 999 |
| ScrFI | CCNGG | 2 cut(s) | 427, 440 |
| SduI | GDGCHC | 5 cut(s) | 27, 599, 865, 937, 981 |
| SexAI | ACCWGGT | 1 cut(s) | 438 |
| SfaNI | GCATC | 3 cut(s) | 52, 284, 346 |
| SfcI | CTRYAG | 1 cut(s) | 246 |
| SinI | GGWCC | 1 cut(s) | 655 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 207, 838 |
| SpeI | ACTAGT | 1 cut(s) | 742 |
| Sse9I | AATT | 6 cut(s) | 255, 610, 1089, 1173, 1225, 1300 |
| SsiI | CCGC | 4 cut(s) | 168, 197, 653, 1265 |
| SspMI | CTAG | 4 cut(s) | 453, 722, 743, 786 |
| SstI | GAGCTC | 1 cut(s) | 27 |
| StyD4I | CCNGG | 2 cut(s) | 425, 438 |
| StyI | CCWWGG | 1 cut(s) | 708 |
| TaaI | ACNGT | 3 cut(s) | 20, 397, 1240 |
| TaiI | ACGT | 1 cut(s) | 602 |
| TaqI | TCGA | 5 cut(s) | 132, 278, 340, 813, 1008 |
| TaqII | GACCGA | 1 cut(s) | 855 |
| TasI | AATT | 6 cut(s) | 255, 610, 1089, 1173, 1225, 1300 |
| TatI | WGTACW | 1 cut(s) | 739 |
| TfiI | GAWTC | 4 cut(s) | 88, 568, 1069, 1102 |
| Tru1I | TTAA | 6 cut(s) | 53, 471, 584, 996, 1047, 1303 |
| Tru9I | TTAA | 6 cut(s) | 53, 471, 584, 996, 1047, 1303 |
| TscAI | CASTG | 4 cut(s) | 39, 381, 400, 859 |
| TseFI | GTSAC | 2 cut(s) | 391, 628 |
| TseI | GCWGC | 3 cut(s) | 65, 194, 650 |
| Tsp45I | GTSAC | 2 cut(s) | 391, 628 |
| TspDTI | ATGAA | 9 cut(s) | 108, 558, 755, 783, 973, 981, 1141, 1181, 1220 |
| TspRI | CASTG | 4 cut(s) | 39, 381, 400, 859 |
| Tth111I | GACNNNGTC | 1 cut(s) | 626 |
| VneI | GTGCAC | 2 cut(s) | 595, 977 |
| VpaK11BI | GGWCC | 1 cut(s) | 655 |
| XapI | RAATTY | 1 cut(s) | 1225 |
| XceI | RCATGY | 1 cut(s) | 1283 |
| XmnI | GAANNNNTTC | 1 cut(s) | 611 |
| XspI | CTAG | 4 cut(s) | 453, 722, 743, 786 |