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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 590, 792 |
| AccI | GTMKAC | 1 cut(s) | 525 |
| AccIII | TCCGGA | 1 cut(s) | 451 |
| AciI | CCGC | 1 cut(s) | 633 |
| AclWI | GGATC | 2 cut(s) | 473, 486 |
| AcoI | YGGCCR | 1 cut(s) | 531 |
| AcyI | GRCGYC | 1 cut(s) | 493 |
| AfaI | GTAC | 1 cut(s) | 251 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 152, 458 |
| AgeI | ACCGGT | 1 cut(s) | 317 |
| AgsI | TTSAA | 4 cut(s) | 76, 109, 487, 584 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 43 |
| AjiI | CACGTC | 1 cut(s) | 572 |
| AluBI | AGCT | 4 cut(s) | 60, 171, 228, 793 |
| AluI | AGCT | 4 cut(s) | 60, 171, 228, 793 |
| AlwI | GGATC | 2 cut(s) | 473, 486 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 29 |
| Aor13HI | TCCGGA | 1 cut(s) | 451 |
| AoxI | GGCC | 1 cut(s) | 531 |
| ApeKI | GCWGC | 2 cut(s) | 225, 228 |
| AsiGI | ACCGGT | 1 cut(s) | 317 |
| AspS9I | GGNCC | 2 cut(s) | 351, 462 |
| AsuC2I | CCSGG | 1 cut(s) | 460 |
| AsuHPI | GGTGA | 1 cut(s) | 332 |
| AvaII | GGWCC | 2 cut(s) | 351, 462 |
| BamHI | GGATCC | 1 cut(s) | 478 |
| BanII | GRGCYC | 1 cut(s) | 147 |
| BbvI | GCAGC | 2 cut(s) | 215, 237 |
| BccI | CCATC | 4 cut(s) | 61, 107, 349, 542 |
| BceAI | ACGGC | 1 cut(s) | 546 |
| BclI | TGATCA | 1 cut(s) | 444 |
| BcnI | CCSGG | 1 cut(s) | 460 |
| BfaI | CTAG | 1 cut(s) | 57 |
| BfuAI | ACCTGC | 2 cut(s) | 590, 792 |
| BisI | GCNGC | 3 cut(s) | 226, 229, 634 |
| BlsI | GCNGC | 3 cut(s) | 227, 230, 635 |
| Bme1390I | CCNGG | 1 cut(s) | 460 |
| Bme18I | GGWCC | 2 cut(s) | 351, 462 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 43 |
| BmgBI | CACGTC | 1 cut(s) | 572 |
| BmgT120I | GGNCC | 2 cut(s) | 351, 462 |
| BmiI | GGNNCC | 3 cut(s) | 353, 463, 480 |
| BmrFI | CCNGG | 1 cut(s) | 460 |
| BmsI | GCATC | 2 cut(s) | 16, 428 |
| BpmI | CTGGAG | 1 cut(s) | 525 |
| BpuMI | CCSGG | 1 cut(s) | 460 |
| BsaHI | GRCGYC | 1 cut(s) | 493 |
| BsaWI | WCCGGW | 2 cut(s) | 317, 451 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 370, 400 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 152, 458 |
| Bse118I | RCCGGY | 1 cut(s) | 317 |
| Bse1I | ACTGG | 1 cut(s) | 508 |
| BseAI | TCCGGA | 1 cut(s) | 451 |
| BseGI | GGATG | 2 cut(s) | 438, 666 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 152, 458 |
| BseMII | CTCAG | 1 cut(s) | 21 |
| BseNI | ACTGG | 1 cut(s) | 508 |
| BseXI | GCAGC | 2 cut(s) | 215, 237 |
| BshFI | GGCC | 1 cut(s) | 533 |
| BshTI | ACCGGT | 1 cut(s) | 317 |
| BsiSI | CCGG | 3 cut(s) | 318, 452, 459 |
| BslFI | GGGAC | 2 cut(s) | 337, 475 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 152, 458 |
| BsmFI | GGGAC | 2 cut(s) | 337, 475 |
| BsnI | GGCC | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 1 cut(s) | 147 |
| Bsp13I | TCCGGA | 1 cut(s) | 451 |
| Bsp143I | GATC | 3 cut(s) | 367, 444, 478 |
| BspACI | CCGC | 1 cut(s) | 633 |
| BspANI | GGCC | 1 cut(s) | 533 |
| BspCNI | CTCAG | 1 cut(s) | 22 |
| BspEI | TCCGGA | 1 cut(s) | 451 |
| BspLI | GGNNCC | 3 cut(s) | 353, 463, 480 |
| BspMI | ACCTGC | 2 cut(s) | 590, 792 |
| BspPI | GGATC | 2 cut(s) | 473, 486 |
| BspQI | GCTCTTC | 1 cut(s) | 135 |
| BsrFI | RCCGGY | 1 cut(s) | 317 |
| BsrI | ACTGG | 1 cut(s) | 508 |
| BssAI | RCCGGY | 1 cut(s) | 317 |
| BssMI | GATC | 3 cut(s) | 367, 444, 478 |
| BssNI | GRCGYC | 1 cut(s) | 493 |
| Bst4CI | ACNGT | 3 cut(s) | 273, 442, 466 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstACI | GRCGYC | 1 cut(s) | 493 |
| BstC8I | GCNNGC | 3 cut(s) | 62, 66, 201 |
| BstDEI | CTNAG | 2 cut(s) | 30, 165 |
| BstF5I | GGATG | 2 cut(s) | 438, 666 |
| BstKTI | GATC | 3 cut(s) | 370, 447, 481 |
| BstMBI | GATC | 3 cut(s) | 367, 444, 478 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 209 |
| BstSCI | CCNGG | 1 cut(s) | 458 |
| BstV1I | GCAGC | 2 cut(s) | 215, 237 |
| BstX2I | RGATCY | 1 cut(s) | 478 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 725 |
| BstYI | RGATCY | 1 cut(s) | 478 |
| BsuRI | GGCC | 1 cut(s) | 533 |
| BtgZI | GCGATG | 1 cut(s) | 327 |
| BtrI | CACGTC | 1 cut(s) | 572 |
| BtsCI | GGATG | 2 cut(s) | 438, 666 |
| BtsIMutI | CAGTG | 1 cut(s) | 501 |
| BveI | ACCTGC | 2 cut(s) | 590, 792 |
| Cac8I | GCNNGC | 3 cut(s) | 62, 66, 201 |
| CaiI | CAGNNNCTG | 1 cut(s) | 29 |
| Cfr10I | RCCGGY | 1 cut(s) | 317 |
| Cfr13I | GGNCC | 2 cut(s) | 351, 462 |
| CseI | GACGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 1 cut(s) | 250 |
| CspAI | ACCGGT | 1 cut(s) | 317 |
| CviAII | CATG | 8 cut(s) | 161, 208, 257, 289, 475, 595, 655, 671 |
| CviQI | GTAC | 1 cut(s) | 250 |
| DdeI | CTNAG | 2 cut(s) | 30, 165 |
| DpnI | GATC | 3 cut(s) | 369, 446, 480 |
| DpnII | GATC | 3 cut(s) | 367, 444, 478 |
| DraI | TTTAAA | 1 cut(s) | 277 |
| DriI | GACNNNNNGTC | 1 cut(s) | 43 |
| EaeI | YGGCCR | 1 cut(s) | 531 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 43 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Eco24I | GRGCYC | 1 cut(s) | 147 |
| Eco32I | GATATC | 1 cut(s) | 664 |
| Eco47I | GGWCC | 2 cut(s) | 351, 462 |
| EcoO109I | RGGNCCY | 1 cut(s) | 351 |
| EcoRV | GATATC | 1 cut(s) | 664 |
| EcoT22I | ATGCAT | 1 cut(s) | 421 |
| EcoT38I | GRGCYC | 1 cut(s) | 147 |
| FaeI | CATG | 8 cut(s) | 164, 211, 260, 292, 478, 598, 658, 674 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 723, 755 |
| FaqI | GGGAC | 2 cut(s) | 337, 475 |
| FatI | CATG | 8 cut(s) | 160, 207, 256, 288, 474, 594, 654, 670 |
| FbaI | TGATCA | 1 cut(s) | 444 |
| FblI | GTMKAC | 1 cut(s) | 525 |
| Fnu4HI | GCNGC | 3 cut(s) | 226, 229, 634 |
| FokI | GGATG | 2 cut(s) | 445, 653 |
| FriOI | GRGCYC | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 3 cut(s) | 226, 229, 634 |
| FspBI | CTAG | 1 cut(s) | 57 |
| GluI | GCNGC | 3 cut(s) | 226, 229, 634 |
| GsuI | CTGGAG | 1 cut(s) | 525 |
| HaeIII | GGCC | 1 cut(s) | 533 |
| HapII | CCGG | 3 cut(s) | 318, 452, 459 |
| HgaI | GACGC | 1 cut(s) | 501 |
| Hin1I | GRCGYC | 1 cut(s) | 493 |
| Hin1II | CATG | 8 cut(s) | 164, 211, 260, 292, 478, 598, 658, 674 |
| HincII | GTYRAC | 1 cut(s) | 438 |
| HindII | GTYRAC | 1 cut(s) | 438 |
| HinfI | GANTC | 2 cut(s) | 4, 337 |
| HpaI | GTTAAC | 1 cut(s) | 438 |
| HpaII | CCGG | 3 cut(s) | 318, 452, 459 |
| HphI | GGTGA | 1 cut(s) | 332 |
| Hpy166II | GTNNAC | 2 cut(s) | 438, 526 |
| Hpy188I | TCNGA | 3 cut(s) | 25, 396, 539 |
| Hpy188III | TCNNGA | 2 cut(s) | 452, 562 |
| Hpy8I | GTNNAC | 2 cut(s) | 438, 526 |
| HpyAV | CCTTC | 1 cut(s) | 95 |
| HpyCH4III | ACNGT | 3 cut(s) | 273, 442, 466 |
| HpyCH4IV | ACGT | 2 cut(s) | 183, 571 |
| HpyCH4V | TGCA | 8 cut(s) | 43, 203, 231, 256, 283, 419, 692, 764 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 209 |
| HpyF3I | CTNAG | 2 cut(s) | 30, 165 |
| HpySE526I | ACGT | 2 cut(s) | 183, 571 |
| Hsp92I | GRCGYC | 1 cut(s) | 493 |
| Hsp92II | CATG | 8 cut(s) | 164, 211, 260, 292, 478, 598, 658, 674 |
| Kpn2I | TCCGGA | 1 cut(s) | 451 |
| Ksp22I | TGATCA | 1 cut(s) | 444 |
| KspAI | GTTAAC | 1 cut(s) | 438 |
| Kzo9I | GATC | 3 cut(s) | 367, 444, 478 |
| LguI | GCTCTTC | 1 cut(s) | 135 |
| LpnPI | CCDG | 6 cut(s) | 78, 331, 465, 472, 489, 585 |
| Lsp1109I | GCAGC | 2 cut(s) | 215, 237 |
| LweI | GCATC | 2 cut(s) | 16, 428 |
| MaeI | CTAG | 1 cut(s) | 57 |
| MaeII | ACGT | 2 cut(s) | 183, 571 |
| MaeIII | GTNAC | 1 cut(s) | 45 |
| MalI | GATC | 3 cut(s) | 369, 446, 480 |
| MboI | GATC | 3 cut(s) | 367, 444, 478 |
| MboII | GAAGA | 3 cut(s) | 152, 414, 601 |
| MflI | RGATCY | 1 cut(s) | 478 |
| MhlI | GDGCHC | 1 cut(s) | 147 |
| MluCI | AATT | 1 cut(s) | 766 |
| MlyI | GAGTC | 1 cut(s) | 346 |
| MnlI | CCTC | 4 cut(s) | 79, 189, 240, 651 |
| Mph1103I | ATGCAT | 1 cut(s) | 421 |
| MroI | TCCGGA | 1 cut(s) | 451 |
| MseI | TTAA | 4 cut(s) | 266, 276, 437, 546 |
| MslI | CAYNNNNRTG | 2 cut(s) | 236, 723 |
| MspA1I | CMGCKG | 1 cut(s) | 228 |
| MspI | CCGG | 3 cut(s) | 318, 452, 459 |
| MspR9I | CCNGG | 1 cut(s) | 460 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 209 |
| NciI | CCSGG | 1 cut(s) | 460 |
| NdeII | GATC | 3 cut(s) | 367, 444, 478 |
| NlaIII | CATG | 8 cut(s) | 164, 211, 260, 292, 478, 598, 658, 674 |
| NlaIV | GGNNCC | 3 cut(s) | 353, 463, 480 |
| NmuCI | GTSAC | 1 cut(s) | 45 |
| NsiI | ATGCAT | 1 cut(s) | 421 |
| PciSI | GCTCTTC | 1 cut(s) | 135 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PinAI | ACCGGT | 1 cut(s) | 317 |
| PkrI | GCNGC | 3 cut(s) | 227, 230, 635 |
| PleI | GAGTC | 1 cut(s) | 345 |
| PpsI | GAGTC | 1 cut(s) | 345 |
| PpuMI | RGGWCCY | 1 cut(s) | 351 |
| Psp5II | RGGWCCY | 1 cut(s) | 351 |
| PspN4I | GGNNCC | 3 cut(s) | 353, 463, 480 |
| PspPI | GGNCC | 2 cut(s) | 351, 462 |
| PspPPI | RGGWCCY | 1 cut(s) | 351 |
| PstNI | CAGNNNCTG | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 478 |
| PvuII | CAGCTG | 1 cut(s) | 228 |
| RsaI | GTAC | 1 cut(s) | 251 |
| RsaNI | GTAC | 1 cut(s) | 250 |
| RseI | CAYNNNNRTG | 2 cut(s) | 236, 723 |
| SapI | GCTCTTC | 1 cut(s) | 135 |
| SaqAI | TTAA | 4 cut(s) | 266, 276, 437, 546 |
| SatI | GCNGC | 3 cut(s) | 226, 229, 634 |
| Sau3AI | GATC | 3 cut(s) | 367, 444, 478 |
| Sau96I | GGNCC | 2 cut(s) | 351, 462 |
| SchI | GAGTC | 1 cut(s) | 346 |
| ScrFI | CCNGG | 1 cut(s) | 460 |
| SduI | GDGCHC | 1 cut(s) | 147 |
| SfaNI | GCATC | 2 cut(s) | 16, 428 |
| SinI | GGWCC | 2 cut(s) | 351, 462 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 236, 723 |
| Sse9I | AATT | 1 cut(s) | 766 |
| SsiI | CCGC | 1 cut(s) | 633 |
| SspMI | CTAG | 1 cut(s) | 57 |
| StyD4I | CCNGG | 1 cut(s) | 458 |
| TaaI | ACNGT | 3 cut(s) | 273, 442, 466 |
| TaiI | ACGT | 2 cut(s) | 186, 574 |
| TasI | AATT | 1 cut(s) | 766 |
| TauI | GCSGC | 1 cut(s) | 636 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 4 cut(s) | 266, 276, 437, 546 |
| Tru9I | TTAA | 4 cut(s) | 266, 276, 437, 546 |
| TscAI | CASTG | 1 cut(s) | 508 |
| TseFI | GTSAC | 1 cut(s) | 45 |
| TseI | GCWGC | 2 cut(s) | 225, 228 |
| Tsp45I | GTSAC | 1 cut(s) | 45 |
| TspDTI | ATGAA | 3 cut(s) | 17, 463, 759 |
| TspRI | CASTG | 1 cut(s) | 508 |
| VpaK11BI | GGWCC | 2 cut(s) | 351, 462 |
| XmiI | GTMKAC | 1 cut(s) | 525 |
| XspI | CTAG | 1 cut(s) | 57 |
| Zsp2I | ATGCAT | 1 cut(s) | 421 |