Transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOM1 | PF25029 | 43 - 159 | 1e-43 | MOM1-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 313 |
| Acc65I | GGTACC | 5 cut(s) | 3119, 3299, 3761, 4052, 4232 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4508 |
| AccI | GTMKAC | 3 cut(s) | 3094, 3556, 4027 |
| AciI | CCGC | 6 cut(s) | 1289, 1515, 2268, 2797, 2886, 3010 |
| AclWI | GGATC | 5 cut(s) | 1597, 1828, 2721, 4506, 4519 |
| AcoI | YGGCCR | 1 cut(s) | 2865 |
| AcuI | CTGAAG | 7 cut(s) | 30, 344, 1359, 1758, 1869, 1920, 2010 |
| AcyI | GRCGYC | 1 cut(s) | 3683 |
| AdeI | CACNNNGTG | 2 cut(s) | 3323, 3785 |
| AflIII | ACRYGT | 2 cut(s) | 90, 408 |
| AgeI | ACCGGT | 1 cut(s) | 3764 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4337 |
| AjnI | CCWGG | 7 cut(s) | 732, 2127, 2974, 3436, 3654, 3907, 4125 |
| Alw21I | GWGCWC | 1 cut(s) | 1788 |
| Alw26I | GTCTC | 8 cut(s) | 468, 567, 619, 1553, 1784, 2529, 2603, 3192 |
| Alw44I | GTGCAC | 1 cut(s) | 1784 |
| AlwI | GGATC | 5 cut(s) | 1597, 1828, 2721, 4506, 4519 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 203, 430 |
| Ama87I | CYCGRG | 1 cut(s) | 2703 |
| AoxI | GGCC | 9 cut(s) | 158, 986, 1665, 2865, 2977, 3396, 3439, 3867, 3910 |
| ApaLI | GTGCAC | 1 cut(s) | 1784 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 3146, 3178, 3608, 3640, 4079, 4111 |
| AseI | ATTAAT | 1 cut(s) | 2684 |
| AsiGI | ACCGGT | 1 cut(s) | 3764 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3201, 3663, 4134 |
| Asp718I | GGTACC | 5 cut(s) | 3119, 3299, 3761, 4052, 4232 |
| AspLEI | GCGC | 4 cut(s) | 1130, 3685, 4156, 4473 |
| AspS9I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| AsuC2I | CCSGG | 3 cut(s) | 1027, 3218, 3680 |
| AsuHPI | GGTGA | 9 cut(s) | 1958, 2130, 2996, 3168, 3458, 3630, 3639, 3929, 4370 |
| AsuII | TTCGAA | 1 cut(s) | 769 |
| AvaI | CYCGRG | 1 cut(s) | 2703 |
| AvaII | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| AxyI | CCTNAGG | 1 cut(s) | 2014 |
| BaeGI | GKGCMC | 2 cut(s) | 1788, 4003 |
| BalI | TGGCCA | 1 cut(s) | 2867 |
| BamHI | GGATCC | 1 cut(s) | 4511 |
| BanII | GRGCYC | 1 cut(s) | 967 |
| BauI | CACGAG | 1 cut(s) | 1787 |
| BbsI | GAAGAC | 5 cut(s) | 855, 1349, 2346, 3046, 3979 |
| Bbv12I | GWGCWC | 1 cut(s) | 1788 |
| BciT130I | CCWGG | 7 cut(s) | 734, 2129, 2976, 3438, 3656, 3909, 4127 |
| BciVI | GTATCC | 1 cut(s) | 2272 |
| BclI | TGATCA | 3 cut(s) | 1216, 3721, 4192 |
| BcnI | CCSGG | 3 cut(s) | 1027, 3218, 3680 |
| BcoDI | GTCTC | 8 cut(s) | 468, 567, 619, 1553, 1784, 2529, 2603, 3192 |
| BfaI | CTAG | 4 cut(s) | 1424, 1493, 1703, 2846 |
| BfmI | CTRYAG | 9 cut(s) | 309, 422, 456, 1077, 2094, 2877, 3270, 3732, 4203 |
| BfoI | RGCGCY | 4 cut(s) | 1131, 3686, 4157, 4474 |
| BfuI | GTATCC | 1 cut(s) | 2272 |
| BglII | AGATCT | 2 cut(s) | 1746, 2423 |
| BlpI | GCTNAGC | 1 cut(s) | 1873 |
| Bme18I | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4337 |
| BmeT110I | CYCGRG | 1 cut(s) | 2703 |
| BmgT120I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| BmsI | GCATC | 9 cut(s) | 190, 379, 505, 988, 1399, 2245, 2779, 3021, 4427 |
| BpiI | GAAGAC | 5 cut(s) | 855, 1349, 2346, 3046, 3979 |
| BpmI | CTGGAG | 9 cut(s) | 1095, 1336, 1527, 1926, 2784, 3135, 3597, 4068, 4281 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1873 |
| Bpu14I | TTCGAA | 1 cut(s) | 769 |
| BpuEI | CTTGAG | 3 cut(s) | 143, 872, 2504 |
| BpuMI | CCSGG | 3 cut(s) | 1027, 3218, 3680 |
| BsaAI | YACGTR | 1 cut(s) | 409 |
| BsaHI | GRCGYC | 1 cut(s) | 3683 |
| BsaI | GGTCTC | 1 cut(s) | 1553 |
| BsaWI | WCCGGW | 2 cut(s) | 3035, 3764 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1668, 1698, 2956, 2986, 3418, 3448, 3889, 3919 |
| Bse118I | RCCGGY | 1 cut(s) | 3764 |
| Bse21I | CCTNAGG | 1 cut(s) | 2014 |
| Bse3DI | GCAATG | 4 cut(s) | 317, 423, 1725, 2379 |
| BseBI | CCWGG | 7 cut(s) | 734, 2129, 2976, 3438, 3656, 3909, 4127 |
| BseGI | GGATG | 3 cut(s) | 145, 616, 4170 |
| BseMI | GCAATG | 4 cut(s) | 317, 423, 1725, 2379 |
| BseMII | CTCAG | 6 cut(s) | 143, 210, 996, 2028, 2078, 2168 |
| BseRI | GAGGAG | 7 cut(s) | 3420, 3423, 3478, 3822, 3949, 4293, 4308 |
| BseSI | GKGCMC | 2 cut(s) | 1788, 4003 |
| BseYI | CCCAGC | 1 cut(s) | 4150 |
| BsgI | GTGCAG | 2 cut(s) | 996, 2259 |
| BshFI | GGCC | 9 cut(s) | 160, 988, 1667, 2867, 2979, 3398, 3441, 3869, 3912 |
| BshTI | ACCGGT | 1 cut(s) | 3764 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1788 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2703 |
| BsiSI | CCGG | 6 cut(s) | 1026, 3036, 3218, 3680, 3765, 4392 |
| BslFI | GGGAC | 3 cut(s) | 1077, 3267, 4325 |
| BsmAI | GTCTC | 8 cut(s) | 468, 567, 619, 1553, 1784, 2529, 2603, 3192 |
| BsmFI | GGGAC | 3 cut(s) | 1077, 3267, 4325 |
| BsmI | GAATGC | 2 cut(s) | 1379, 1975 |
| BsnI | GGCC | 9 cut(s) | 160, 988, 1667, 2867, 2979, 3398, 3441, 3869, 3912 |
| Bso31I | GGTCTC | 1 cut(s) | 1553 |
| BsoBI | CYCGRG | 1 cut(s) | 2703 |
| Bsp119I | TTCGAA | 1 cut(s) | 769 |
| Bsp1286I | GDGCHC | 3 cut(s) | 967, 1788, 4003 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1873 |
| Bsp19I | CCATGG | 1 cut(s) | 2209 |
| BspACI | CCGC | 6 cut(s) | 1289, 1515, 2268, 2797, 2886, 3010 |
| BspANI | GGCC | 9 cut(s) | 160, 988, 1667, 2867, 2979, 3398, 3441, 3869, 3912 |
| BspCNI | CTCAG | 6 cut(s) | 142, 209, 997, 2027, 2077, 2167 |
| BspMAI | CTGCAG | 8 cut(s) | 313, 426, 460, 2098, 2881, 3274, 3736, 4207 |
| BspPI | GGATC | 5 cut(s) | 1597, 1828, 2721, 4506, 4519 |
| BspQI | GCTCTTC | 1 cut(s) | 4413 |
| BspT104I | TTCGAA | 1 cut(s) | 769 |
| BspTNI | GGTCTC | 1 cut(s) | 1553 |
| BsrDI | GCAATG | 4 cut(s) | 317, 423, 1725, 2379 |
| BsrFI | RCCGGY | 1 cut(s) | 3764 |
| BssAI | RCCGGY | 1 cut(s) | 3764 |
| BssNI | GRCGYC | 1 cut(s) | 3683 |
| BssSI | CACGAG | 1 cut(s) | 1787 |
| BssT1I | CCWWGG | 7 cut(s) | 1954, 2163, 2209, 3046, 3508, 3979, 4335 |
| Bst2BI | CACGAG | 1 cut(s) | 1787 |
| Bst2UI | CCWGG | 7 cut(s) | 734, 2129, 2976, 3438, 3656, 3909, 4127 |
| Bst4CI | ACNGT | 8 cut(s) | 1441, 1535, 1778, 1882, 2135, 2465, 3238, 4382 |
| Bst6I | CTCTTC | 6 cut(s) | 99, 714, 2457, 2494, 3967, 4413 |
| BstACI | GRCGYC | 1 cut(s) | 3683 |
| BstBAI | YACGTR | 1 cut(s) | 409 |
| BstBI | TTCGAA | 1 cut(s) | 769 |
| BstC8I | GCNNGC | 7 cut(s) | 282, 913, 1084, 2266, 2664, 2884, 4404 |
| BstDEI | CTNAG | 8 cut(s) | 129, 196, 1005, 1873, 2014, 2064, 2083, 2154 |
| BstDSI | CCRYGG | 1 cut(s) | 2209 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2648 |
| BstF5I | GGATG | 3 cut(s) | 145, 616, 4170 |
| BstH2I | RGCGCY | 4 cut(s) | 1131, 3686, 4157, 4474 |
| BstHHI | GCGC | 4 cut(s) | 1130, 3685, 4156, 4473 |
| BstMAI | GTCTC | 8 cut(s) | 468, 567, 619, 1553, 1784, 2529, 2603, 3192 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1136, 2195, 4153 |
| BstNI | CCWGG | 7 cut(s) | 734, 2129, 2976, 3438, 3656, 3909, 4127 |
| BstNSI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| BstSFI | CTRYAG | 9 cut(s) | 309, 422, 456, 1077, 2094, 2877, 3270, 3732, 4203 |
| BstSLI | GKGCMC | 2 cut(s) | 1788, 4003 |
| BstV2I | GAAGAC | 5 cut(s) | 855, 1349, 2346, 3046, 3979 |
| BstX2I | RGATCY | 5 cut(s) | 1602, 1746, 2423, 2713, 4511 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2210 |
| BstYI | RGATCY | 5 cut(s) | 1602, 1746, 2423, 2713, 4511 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2014 |
| BsuI | GTATCC | 1 cut(s) | 2272 |
| BsuRI | GGCC | 9 cut(s) | 160, 988, 1667, 2867, 2979, 3398, 3441, 3869, 3912 |
| BtgI | CCRYGG | 1 cut(s) | 2209 |
| BtsCI | GGATG | 3 cut(s) | 145, 616, 4170 |
| BtsI | GCAGTG | 2 cut(s) | 431, 1419 |
| Cac8I | GCNNGC | 7 cut(s) | 282, 913, 1084, 2266, 2664, 2884, 4404 |
| CaiI | CAGNNNCTG | 2 cut(s) | 203, 430 |
| CfoI | GCGC | 4 cut(s) | 1130, 3685, 4156, 4473 |
| Cfr10I | RCCGGY | 1 cut(s) | 3764 |
| Cfr13I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| CseI | GACGC | 3 cut(s) | 303, 863, 1584 |
| CspAI | ACCGGT | 1 cut(s) | 3764 |
| DdeI | CTNAG | 8 cut(s) | 129, 196, 1005, 1873, 2014, 2064, 2083, 2154 |
| DinI | GGCGCC | 1 cut(s) | 3684 |
| DraI | TTTAAA | 1 cut(s) | 451 |
| DraIII | CACNNNGTG | 2 cut(s) | 3323, 3785 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 313 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4337 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 313 |
| EaeI | YGGCCR | 1 cut(s) | 2865 |
| Eam1104I | CTCTTC | 6 cut(s) | 99, 714, 2457, 2494, 3967, 4413 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4337 |
| EarI | CTCTTC | 6 cut(s) | 99, 714, 2457, 2494, 3967, 4413 |
| Eco130I | CCWWGG | 7 cut(s) | 1954, 2163, 2209, 3046, 3508, 3979, 4335 |
| Eco24I | GRGCYC | 1 cut(s) | 967 |
| Eco31I | GGTCTC | 1 cut(s) | 1553 |
| Eco32I | GATATC | 1 cut(s) | 294 |
| Eco47I | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| Eco57I | CTGAAG | 7 cut(s) | 30, 344, 1359, 1758, 1869, 1920, 2010 |
| Eco81I | CCTNAGG | 1 cut(s) | 2014 |
| Eco88I | CYCGRG | 1 cut(s) | 2703 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2648 |
| EcoO109I | RGGNCCY | 1 cut(s) | 139 |
| EcoRI | GAATTC | 2 cut(s) | 3817, 4288 |
| EcoRII | CCWGG | 7 cut(s) | 732, 2127, 2974, 3436, 3654, 3907, 4125 |
| EcoRV | GATATC | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 7 cut(s) | 1954, 2163, 2209, 3046, 3508, 3979, 4335 |
| EcoT38I | GRGCYC | 1 cut(s) | 967 |
| EgeI | GGCGCC | 1 cut(s) | 3684 |
| EheI | GGCGCC | 1 cut(s) | 3684 |
| ErhI | CCWWGG | 7 cut(s) | 1954, 2163, 2209, 3046, 3508, 3979, 4335 |
| FaqI | GGGAC | 3 cut(s) | 1077, 3267, 4325 |
| FauI | CCCGC | 1 cut(s) | 3017 |
| FauNDI | CATATG | 1 cut(s) | 2691 |
| FbaI | TGATCA | 3 cut(s) | 1216, 3721, 4192 |
| FblI | GTMKAC | 3 cut(s) | 3094, 3556, 4027 |
| FokI | GGATG | 3 cut(s) | 132, 623, 4177 |
| FriOI | GRGCYC | 1 cut(s) | 967 |
| FspBI | CTAG | 4 cut(s) | 1424, 1493, 1703, 2846 |
| GlaI | GCGC | 4 cut(s) | 1129, 3684, 4155, 4472 |
| GsaI | CCCAGC | 1 cut(s) | 4154 |
| GsuI | CTGGAG | 9 cut(s) | 1095, 1336, 1527, 1926, 2784, 3135, 3597, 4068, 4281 |
| HaeII | RGCGCY | 4 cut(s) | 1131, 3686, 4157, 4474 |
| HaeIII | GGCC | 9 cut(s) | 160, 988, 1667, 2867, 2979, 3398, 3441, 3869, 3912 |
| HapII | CCGG | 6 cut(s) | 1026, 3036, 3218, 3680, 3765, 4392 |
| HgaI | GACGC | 3 cut(s) | 303, 863, 1584 |
| HhaI | GCGC | 4 cut(s) | 1130, 3685, 4156, 4473 |
| Hin1I | GRCGYC | 1 cut(s) | 3683 |
| Hin6I | GCGC | 4 cut(s) | 1128, 3683, 4154, 4471 |
| HinP1I | GCGC | 4 cut(s) | 1128, 3683, 4154, 4471 |
| HincII | GTYRAC | 2 cut(s) | 2288, 2794 |
| HindII | GTYRAC | 2 cut(s) | 2288, 2794 |
| HindIII | AAGCTT | 1 cut(s) | 2262 |
| HpaII | CCGG | 6 cut(s) | 1026, 3036, 3218, 3680, 3765, 4392 |
| HphI | GGTGA | 9 cut(s) | 1958, 2130, 2996, 3168, 3458, 3630, 3639, 3929, 4370 |
| HpyCH4III | ACNGT | 8 cut(s) | 1441, 1535, 1778, 1882, 2135, 2465, 3238, 4382 |
| HpyCH4IV | ACGT | 1 cut(s) | 408 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1136, 2195, 4153 |
| HpyF3I | CTNAG | 8 cut(s) | 129, 196, 1005, 1873, 2014, 2064, 2083, 2154 |
| HpySE526I | ACGT | 1 cut(s) | 408 |
| Hsp92I | GRCGYC | 1 cut(s) | 3683 |
| HspAI | GCGC | 4 cut(s) | 1128, 3683, 4154, 4471 |
| KasI | GGCGCC | 1 cut(s) | 3682 |
| KpnI | GGTACC | 5 cut(s) | 3123, 3303, 3765, 4056, 4236 |
| Ksp22I | TGATCA | 3 cut(s) | 1216, 3721, 4192 |
| LguI | GCTCTTC | 1 cut(s) | 4413 |
| LmnI | GCTCC | 3 cut(s) | 1546, 2938, 4306 |
| LweI | GCATC | 9 cut(s) | 190, 379, 505, 988, 1399, 2245, 2779, 3021, 4427 |
| MaeI | CTAG | 4 cut(s) | 1424, 1493, 1703, 2846 |
| MaeII | ACGT | 1 cut(s) | 408 |
| MfeI | CAATTG | 3 cut(s) | 382, 680, 2546 |
| MflI | RGATCY | 5 cut(s) | 1602, 1746, 2423, 2713, 4511 |
| MhlI | GDGCHC | 3 cut(s) | 967, 1788, 4003 |
| MlsI | TGGCCA | 1 cut(s) | 2867 |
| MluNI | TGGCCA | 1 cut(s) | 2867 |
| Mly113I | GGCGCC | 1 cut(s) | 3683 |
| MlyI | GAGTC | 6 cut(s) | 470, 764, 1016, 1931, 2291, 2336 |
| MmeI | TCCRAC | 2 cut(s) | 284, 2644 |
| Mox20I | TGGCCA | 1 cut(s) | 2867 |
| MroXI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3201, 3663, 4134 |
| MscI | TGGCCA | 1 cut(s) | 2867 |
| Msp20I | TGGCCA | 1 cut(s) | 2867 |
| MspA1I | CMGCKG | 2 cut(s) | 901, 1055 |
| MspI | CCGG | 6 cut(s) | 1026, 3036, 3218, 3680, 3765, 4392 |
| MunI | CAATTG | 3 cut(s) | 382, 680, 2546 |
| Mva1269I | GAATGC | 2 cut(s) | 1379, 1975 |
| MvaI | CCWGG | 7 cut(s) | 734, 2129, 2976, 3438, 3656, 3909, 4127 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1136, 2195, 4153 |
| NarI | GGCGCC | 1 cut(s) | 3683 |
| NciI | CCSGG | 3 cut(s) | 1027, 3218, 3680 |
| NcoI | CCATGG | 1 cut(s) | 2209 |
| NdeI | CATATG | 1 cut(s) | 2691 |
| NspI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| NspV | TTCGAA | 1 cut(s) | 769 |
| PaeI | GCATGC | 1 cut(s) | 1086 |
| PciI | ACATGT | 1 cut(s) | 90 |
| PciSI | GCTCTTC | 1 cut(s) | 4413 |
| PctI | GAATGC | 2 cut(s) | 1379, 1975 |
| PdmI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3201, 3663, 4134 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4508 |
| PfoI | TCCNGGA | 2 cut(s) | 3654, 4125 |
| PinAI | ACCGGT | 1 cut(s) | 3764 |
| PleI | GAGTC | 6 cut(s) | 469, 763, 1015, 1930, 2291, 2336 |
| PluTI | GGCGCC | 1 cut(s) | 3686 |
| PpsI | GAGTC | 6 cut(s) | 469, 763, 1015, 1930, 2291, 2336 |
| Ppu21I | YACGTR | 1 cut(s) | 409 |
| PpuMI | RGGWCCY | 1 cut(s) | 139 |
| PscI | ACATGT | 1 cut(s) | 90 |
| PshBI | ATTAAT | 1 cut(s) | 2684 |
| Psp5II | RGGWCCY | 1 cut(s) | 139 |
| Psp6I | CCWGG | 7 cut(s) | 732, 2127, 2974, 3436, 3654, 3907, 4125 |
| PspFI | CCCAGC | 1 cut(s) | 4150 |
| PspGI | CCWGG | 7 cut(s) | 732, 2127, 2974, 3436, 3654, 3907, 4125 |
| PspPI | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| PspPPI | RGGWCCY | 1 cut(s) | 139 |
| PstI | CTGCAG | 8 cut(s) | 313, 426, 460, 2098, 2881, 3274, 3736, 4207 |
| PstNI | CAGNNNCTG | 2 cut(s) | 203, 430 |
| PsuI | RGATCY | 5 cut(s) | 1602, 1746, 2423, 2713, 4511 |
| PvuII | CAGCTG | 2 cut(s) | 901, 1055 |
| SapI | GCTCTTC | 1 cut(s) | 4413 |
| Sau96I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| SchI | GAGTC | 6 cut(s) | 470, 764, 1016, 1931, 2291, 2336 |
| SduI | GDGCHC | 3 cut(s) | 967, 1788, 4003 |
| SfaNI | GCATC | 9 cut(s) | 190, 379, 505, 988, 1399, 2245, 2779, 3021, 4427 |
| SfcI | CTRYAG | 9 cut(s) | 309, 422, 456, 1077, 2094, 2877, 3270, 3732, 4203 |
| SfoI | GGCGCC | 1 cut(s) | 3684 |
| SfuI | TTCGAA | 1 cut(s) | 769 |
| SinI | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| SmlI | CTYRAG | 3 cut(s) | 122, 887, 2519 |
| SmoI | CTYRAG | 3 cut(s) | 122, 887, 2519 |
| SphI | GCATGC | 1 cut(s) | 1086 |
| SsiI | CCGC | 6 cut(s) | 1289, 1515, 2268, 2797, 2886, 3010 |
| SspDI | GGCGCC | 1 cut(s) | 3682 |
| SspMI | CTAG | 4 cut(s) | 1424, 1493, 1703, 2846 |
| StyI | CCWWGG | 7 cut(s) | 1954, 2163, 2209, 3046, 3508, 3979, 4335 |
| TaaI | ACNGT | 8 cut(s) | 1441, 1535, 1778, 1882, 2135, 2465, 3238, 4382 |
| TaiI | ACGT | 1 cut(s) | 411 |
| TaqI | TCGA | 7 cut(s) | 28, 769, 1751, 1968, 2987, 3449, 4440 |
| TatI | WGTACW | 3 cut(s) | 238, 437, 1568 |
| TauI | GCSGC | 1 cut(s) | 1517 |
| TspGWI | ACGGA | 4 cut(s) | 3280, 3742, 4177, 4213 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4508 |
| VneI | GTGCAC | 1 cut(s) | 1784 |
| VpaK11BI | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4339 |
| VspI | ATTAAT | 1 cut(s) | 2684 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2648 |
| XbaI | TCTAGA | 1 cut(s) | 1492 |
| XceI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2309, 2860 |
| XmiI | GTMKAC | 3 cut(s) | 3094, 3556, 4027 |
| XmnI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3201, 3663, 4134 |
| XspI | CTAG | 4 cut(s) | 1424, 1493, 1703, 2846 |