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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 358 |
| AccI | GTMKAC | 2 cut(s) | 138, 165 |
| AccII | CGCG | 1 cut(s) | 375 |
| AciI | CCGC | 6 cut(s) | 274, 330, 358, 457, 622, 674 |
| AclWI | GGATC | 4 cut(s) | 577, 619, 632, 801 |
| AcoI | YGGCCR | 2 cut(s) | 71, 331 |
| AcsI | RAATTY | 1 cut(s) | 122 |
| AcuI | CTGAAG | 1 cut(s) | 728 |
| AcvI | CACGTG | 1 cut(s) | 433 |
| AcyI | GRCGYC | 2 cut(s) | 135, 683 |
| AfaI | GTAC | 3 cut(s) | 437, 529, 752 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 69, 154, 546, 599, 600 |
| AflIII | ACRYGT | 3 cut(s) | 430, 432, 753 |
| AgsI | TTSAA | 1 cut(s) | 649 |
| AjnI | CCWGG | 1 cut(s) | 503 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 2 cut(s) | 58, 77 |
| AluI | AGCT | 2 cut(s) | 58, 77 |
| Alw26I | GTCTC | 1 cut(s) | 418 |
| AlwI | GGATC | 4 cut(s) | 577, 619, 632, 801 |
| AoxI | GGCC | 3 cut(s) | 71, 129, 331 |
| ApeKI | GCWGC | 7 cut(s) | 58, 261, 270, 297, 361, 425, 772 |
| ApoI | RAATTY | 1 cut(s) | 122 |
| AspA2I | CCTAGG | 1 cut(s) | 545 |
| AspS9I | GGNCC | 1 cut(s) | 129 |
| AsuC2I | CCSGG | 1 cut(s) | 564 |
| AsuHPI | GGTGA | 2 cut(s) | 470, 691 |
| AvrII | CCTAGG | 1 cut(s) | 545 |
| BamHI | GGATCC | 1 cut(s) | 624 |
| BauI | CACGAG | 1 cut(s) | 149 |
| BbrPI | CACGTG | 1 cut(s) | 433 |
| BbvI | GCAGC | 7 cut(s) | 45, 273, 282, 284, 373, 412, 784 |
| BccI | CCATC | 2 cut(s) | 489, 637 |
| BceAI | ACGGC | 3 cut(s) | 454, 592, 670 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 106, 140 |
| BciT130I | CCWGG | 1 cut(s) | 505 |
| BcnI | CCSGG | 1 cut(s) | 564 |
| BcoDI | GTCTC | 1 cut(s) | 418 |
| BfaI | CTAG | 3 cut(s) | 525, 546, 642 |
| BfmI | CTRYAG | 2 cut(s) | 298, 517 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 462 |
| BlnI | CCTAGG | 1 cut(s) | 545 |
| BmcAI | AGTACT | 1 cut(s) | 529 |
| Bme1390I | CCNGG | 2 cut(s) | 505, 564 |
| BmgT120I | GGNCC | 1 cut(s) | 129 |
| BmiI | GGNNCC | 2 cut(s) | 130, 626 |
| BmrFI | CCNGG | 2 cut(s) | 505, 564 |
| BmsI | GCATC | 2 cut(s) | 126, 388 |
| BpmI | CTGGAG | 1 cut(s) | 368 |
| BpuMI | CCSGG | 1 cut(s) | 564 |
| BsaAI | YACGTR | 1 cut(s) | 433 |
| BsaBI | GATNNNNATC | 1 cut(s) | 798 |
| BsaHI | GRCGYC | 2 cut(s) | 135, 683 |
| BsaI | GGTCTC | 1 cut(s) | 418 |
| BsaJI | CCNNGG | 4 cut(s) | 325, 460, 545, 562 |
| BsaWI | WCCGGW | 1 cut(s) | 82 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 396, 426 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 69, 154, 546, 599, 600 |
| Bse118I | RCCGGY | 3 cut(s) | 131, 712, 747 |
| Bse1I | ACTGG | 2 cut(s) | 385, 540 |
| Bse8I | GATNNNNATC | 1 cut(s) | 798 |
| BseBI | CCWGG | 1 cut(s) | 505 |
| BseDI | CCNNGG | 4 cut(s) | 325, 460, 545, 562 |
| BseGI | GGATG | 1 cut(s) | 487 |
| BseJI | GATNNNNATC | 1 cut(s) | 798 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 69, 154, 546, 599, 600 |
| BseMII | CTCAG | 1 cut(s) | 68 |
| BseNI | ACTGG | 2 cut(s) | 385, 540 |
| BseRI | GAGGAG | 1 cut(s) | 69 |
| BseXI | GCAGC | 7 cut(s) | 45, 273, 282, 284, 373, 412, 784 |
| BsgI | GTGCAG | 2 cut(s) | 411, 791 |
| Bsh1236I | CGCG | 1 cut(s) | 375 |
| Bsh1285I | CGRYCG | 1 cut(s) | 165 |
| BshFI | GGCC | 3 cut(s) | 73, 131, 333 |
| BsiEI | CGRYCG | 1 cut(s) | 165 |
| BsiSI | CCGG | 7 cut(s) | 70, 83, 132, 564, 696, 713, 748 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 69, 154, 546, 599, 600 |
| BsmAI | GTCTC | 1 cut(s) | 418 |
| BsnI | GGCC | 3 cut(s) | 73, 131, 333 |
| Bso31I | GGTCTC | 1 cut(s) | 418 |
| Bsp143I | GATC | 3 cut(s) | 569, 624, 793 |
| BspACI | CCGC | 6 cut(s) | 274, 330, 358, 457, 622, 674 |
| BspANI | GGCC | 3 cut(s) | 73, 131, 333 |
| BspCNI | CTCAG | 1 cut(s) | 67 |
| BspFNI | CGCG | 1 cut(s) | 375 |
| BspHI | TCATGA | 1 cut(s) | 33 |
| BspLI | GGNNCC | 2 cut(s) | 130, 626 |
| BspMAI | CTGCAG | 1 cut(s) | 302 |
| BspPI | GGATC | 4 cut(s) | 577, 619, 632, 801 |
| BspTNI | GGTCTC | 1 cut(s) | 418 |
| BsrBI | CCGCTC | 1 cut(s) | 358 |
| BsrFI | RCCGGY | 3 cut(s) | 131, 712, 747 |
| BsrI | ACTGG | 2 cut(s) | 385, 540 |
| BssAI | RCCGGY | 3 cut(s) | 131, 712, 747 |
| BssECI | CCNNGG | 4 cut(s) | 325, 460, 545, 562 |
| BssMI | GATC | 3 cut(s) | 569, 624, 793 |
| BssNI | GRCGYC | 2 cut(s) | 135, 683 |
| BssSI | CACGAG | 1 cut(s) | 149 |
| BssT1I | CCWWGG | 2 cut(s) | 460, 545 |
| Bst2BI | CACGAG | 1 cut(s) | 149 |
| Bst2UI | CCWGG | 1 cut(s) | 505 |
| Bst4CI | ACNGT | 2 cut(s) | 521, 659 |
| BstACI | GRCGYC | 2 cut(s) | 135, 683 |
| BstBAI | YACGTR | 1 cut(s) | 433 |
| BstC8I | GCNNGC | 4 cut(s) | 75, 133, 366, 377 |
| BstDEI | CTNAG | 1 cut(s) | 54 |
| BstF5I | GGATG | 1 cut(s) | 487 |
| BstFNI | CGCG | 1 cut(s) | 375 |
| BstKTI | GATC | 3 cut(s) | 572, 627, 796 |
| BstMAI | GTCTC | 1 cut(s) | 418 |
| BstMBI | GATC | 3 cut(s) | 569, 624, 793 |
| BstMCI | CGRYCG | 1 cut(s) | 165 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 258, 267, 270, 294, 406, 462, 682 |
| BstNI | CCWGG | 1 cut(s) | 505 |
| BstNSI | RCATGY | 1 cut(s) | 757 |
| BstSCI | CCNGG | 2 cut(s) | 503, 562 |
| BstSFI | CTRYAG | 2 cut(s) | 298, 517 |
| BstUI | CGCG | 1 cut(s) | 375 |
| BstV1I | GCAGC | 7 cut(s) | 45, 273, 282, 284, 373, 412, 784 |
| BstX2I | RGATCY | 2 cut(s) | 624, 793 |
| BstYI | RGATCY | 2 cut(s) | 624, 793 |
| BsuRI | GGCC | 3 cut(s) | 73, 131, 333 |
| BtsCI | GGATG | 1 cut(s) | 487 |
| Cac8I | GCNNGC | 4 cut(s) | 75, 133, 366, 377 |
| CciI | TCATGA | 1 cut(s) | 33 |
| Cfr10I | RCCGGY | 3 cut(s) | 131, 712, 747 |
| Cfr13I | GGNCC | 1 cut(s) | 129 |
| CseI | GACGC | 3 cut(s) | 124, 431, 691 |
| Csp6I | GTAC | 3 cut(s) | 436, 528, 751 |
| CviAII | CATG | 4 cut(s) | 34, 401, 754, 782 |
| CviQI | GTAC | 3 cut(s) | 436, 528, 751 |
| DdeI | CTNAG | 1 cut(s) | 54 |
| DpnI | GATC | 3 cut(s) | 571, 626, 795 |
| DpnII | GATC | 3 cut(s) | 569, 624, 793 |
| EaeI | YGGCCR | 2 cut(s) | 71, 331 |
| EciI | GGCGGA | 1 cut(s) | 637 |
| Eco130I | CCWWGG | 2 cut(s) | 460, 545 |
| Eco31I | GGTCTC | 1 cut(s) | 418 |
| Eco57I | CTGAAG | 1 cut(s) | 728 |
| Eco72I | CACGTG | 1 cut(s) | 433 |
| EcoRI | GAATTC | 1 cut(s) | 122 |
| EcoRII | CCWGG | 1 cut(s) | 503 |
| EcoT14I | CCWWGG | 2 cut(s) | 460, 545 |
| ErhI | CCWWGG | 2 cut(s) | 460, 545 |
| FaeI | CATG | 4 cut(s) | 37, 404, 757, 785 |
| FaiI | YATR | 9 cut(s) | 35, 236, 395, 402, 574, 596, 755, 759, 783 |
| FatI | CATG | 4 cut(s) | 33, 400, 753, 781 |
| FauI | CCCGC | 1 cut(s) | 681 |
| FblI | GTMKAC | 2 cut(s) | 138, 165 |
| FokI | GGATG | 1 cut(s) | 474 |
| FspBI | CTAG | 3 cut(s) | 525, 546, 642 |
| GsuI | CTGGAG | 1 cut(s) | 368 |
| HaeIII | GGCC | 3 cut(s) | 73, 131, 333 |
| HapII | CCGG | 7 cut(s) | 70, 83, 132, 564, 696, 713, 748 |
| HgaI | GACGC | 3 cut(s) | 124, 431, 691 |
| Hin1I | GRCGYC | 2 cut(s) | 135, 683 |
| Hin1II | CATG | 4 cut(s) | 37, 404, 757, 785 |
| HincII | GTYRAC | 3 cut(s) | 88, 139, 166 |
| HindII | GTYRAC | 3 cut(s) | 88, 139, 166 |
| HinfI | GANTC | 7 cut(s) | 44, 152, 158, 279, 604, 761, 787 |
| HpaII | CCGG | 7 cut(s) | 70, 83, 132, 564, 696, 713, 748 |
| HphI | GGTGA | 2 cut(s) | 470, 691 |
| Hpy166II | GTNNAC | 4 cut(s) | 88, 139, 166, 436 |
| Hpy188I | TCNGA | 1 cut(s) | 157 |
| Hpy188III | TCNNGA | 4 cut(s) | 34, 310, 653, 791 |
| Hpy8I | GTNNAC | 4 cut(s) | 88, 139, 166, 436 |
| Hpy99I | CGWCG | 2 cut(s) | 140, 425 |
| HpyAV | CCTTC | 1 cut(s) | 58 |
| HpyCH4III | ACNGT | 2 cut(s) | 521, 659 |
| HpyCH4IV | ACGT | 2 cut(s) | 39, 432 |
| HpyCH4V | TGCA | 4 cut(s) | 300, 400, 428, 772 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 258, 267, 270, 294, 406, 462, 682 |
| HpyF3I | CTNAG | 1 cut(s) | 54 |
| HpySE526I | ACGT | 2 cut(s) | 39, 432 |
| Hsp92I | GRCGYC | 2 cut(s) | 135, 683 |
| Hsp92II | CATG | 4 cut(s) | 37, 404, 757, 785 |
| KroI | GCCGGC | 1 cut(s) | 131 |
| KroNI | GCCGGC | 1 cut(s) | 133 |
| Kzo9I | GATC | 3 cut(s) | 569, 624, 793 |
| LmnI | GCTCC | 2 cut(s) | 82, 595 |
| Lsp1109I | GCAGC | 7 cut(s) | 45, 273, 282, 284, 373, 412, 784 |
| LweI | GCATC | 2 cut(s) | 126, 388 |
| MaeI | CTAG | 3 cut(s) | 525, 546, 642 |
| MaeII | ACGT | 2 cut(s) | 39, 432 |
| MaeIII | GTNAC | 2 cut(s) | 653, 679 |
| MalI | GATC | 3 cut(s) | 571, 626, 795 |
| MbiI | CCGCTC | 1 cut(s) | 358 |
| MboI | GATC | 3 cut(s) | 569, 624, 793 |
| MboII | GAAGA | 4 cut(s) | 19, 206, 713, 788 |
| MflI | RGATCY | 2 cut(s) | 624, 793 |
| MluCI | AATT | 3 cut(s) | 122, 448, 736 |
| MlyI | GAGTC | 3 cut(s) | 161, 613, 796 |
| MmeI | TCCRAC | 1 cut(s) | 135 |
| MnlI | CCTC | 5 cut(s) | 9, 90, 193, 335, 398 |
| MroNI | GCCGGC | 1 cut(s) | 131 |
| MslI | CAYNNNNRTG | 1 cut(s) | 38 |
| MspA1I | CMGCKG | 2 cut(s) | 58, 676 |
| MspI | CCGG | 7 cut(s) | 70, 83, 132, 564, 696, 713, 748 |
| MspR9I | CCNGG | 2 cut(s) | 505, 564 |
| MvaI | CCWGG | 1 cut(s) | 505 |
| MvnI | CGCG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 258, 267, 270, 294, 406, 462, 682 |
| NaeI | GCCGGC | 1 cut(s) | 133 |
| NciI | CCSGG | 1 cut(s) | 564 |
| NdeII | GATC | 3 cut(s) | 569, 624, 793 |
| NgoMIV | GCCGGC | 1 cut(s) | 131 |
| NlaIII | CATG | 4 cut(s) | 37, 404, 757, 785 |
| NlaIV | GGNNCC | 2 cut(s) | 130, 626 |
| NmeAIII | GCCGAG | 1 cut(s) | 306 |
| NmuCI | GTSAC | 2 cut(s) | 653, 679 |
| NspI | RCATGY | 1 cut(s) | 757 |
| PagI | TCATGA | 1 cut(s) | 33 |
| PciI | ACATGT | 1 cut(s) | 753 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 132, 372, 429 |
| PdiI | GCCGGC | 1 cut(s) | 133 |
| PfeI | GAWTC | 4 cut(s) | 44, 158, 279, 761 |
| PfoI | TCCNGGA | 1 cut(s) | 503 |
| PleI | GAGTC | 3 cut(s) | 160, 612, 795 |
| PmaCI | CACGTG | 1 cut(s) | 433 |
| PmlI | CACGTG | 1 cut(s) | 433 |
| PpsI | GAGTC | 3 cut(s) | 160, 612, 795 |
| Ppu21I | YACGTR | 1 cut(s) | 433 |
| PscI | ACATGT | 1 cut(s) | 753 |
| Psp6I | CCWGG | 1 cut(s) | 503 |
| PspCI | CACGTG | 1 cut(s) | 433 |
| PspGI | CCWGG | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 2 cut(s) | 130, 626 |
| PspPI | GGNCC | 1 cut(s) | 129 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 500, 532 |
| PstI | CTGCAG | 1 cut(s) | 302 |
| PsuI | RGATCY | 2 cut(s) | 624, 793 |
| PvuII | CAGCTG | 1 cut(s) | 58 |
| RsaI | GTAC | 3 cut(s) | 437, 529, 752 |
| RsaNI | GTAC | 3 cut(s) | 436, 528, 751 |
| RseI | CAYNNNNRTG | 1 cut(s) | 38 |
| SalI | GTCGAC | 2 cut(s) | 137, 164 |
| Sau3AI | GATC | 3 cut(s) | 569, 624, 793 |
| Sau96I | GGNCC | 1 cut(s) | 129 |
| ScaI | AGTACT | 1 cut(s) | 529 |
| SchI | GAGTC | 3 cut(s) | 161, 613, 796 |
| ScrFI | CCNGG | 2 cut(s) | 505, 564 |
| SetI | ASST | 7 cut(s) | 42, 60, 79, 435, 497, 551, 727 |
| SfaNI | GCATC | 2 cut(s) | 126, 388 |
| SfcI | CTRYAG | 2 cut(s) | 298, 517 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 38 |
| Sse9I | AATT | 3 cut(s) | 122, 448, 736 |
| SsiI | CCGC | 6 cut(s) | 274, 330, 358, 457, 622, 674 |
| SspMI | CTAG | 3 cut(s) | 525, 546, 642 |
| StyD4I | CCNGG | 2 cut(s) | 503, 562 |
| StyI | CCWWGG | 2 cut(s) | 460, 545 |
| TaaI | ACNGT | 2 cut(s) | 521, 659 |
| TaiI | ACGT | 2 cut(s) | 42, 435 |
| TaqI | TCGA | 5 cut(s) | 120, 138, 165, 282, 764 |
| TaqII | GACCGA | 1 cut(s) | 151 |
| TasI | AATT | 3 cut(s) | 122, 448, 736 |
| TatI | WGTACW | 1 cut(s) | 527 |
| TauI | GCSGC | 4 cut(s) | 276, 333, 361, 459 |
| TfiI | GAWTC | 4 cut(s) | 44, 158, 279, 761 |
| TseFI | GTSAC | 2 cut(s) | 653, 679 |
| TseI | GCWGC | 7 cut(s) | 58, 261, 270, 297, 361, 425, 772 |
| Tsp45I | GTSAC | 2 cut(s) | 653, 679 |
| TspDTI | ATGAA | 6 cut(s) | 22, 50, 461, 683, 774, 788 |
| TspGWI | ACGGA | 2 cut(s) | 489, 570 |
| XapI | RAATTY | 1 cut(s) | 122 |
| XceI | RCATGY | 1 cut(s) | 757 |
| XmaJI | CCTAGG | 1 cut(s) | 545 |
| XmiI | GTMKAC | 2 cut(s) | 138, 165 |
| XspI | CTAG | 3 cut(s) | 525, 546, 642 |
| ZrmI | AGTACT | 1 cut(s) | 529 |