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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 231 |
| AccIII | TCCGGA | 1 cut(s) | 547 |
| AciI | CCGC | 1 cut(s) | 600 |
| AclWI | GGATC | 3 cut(s) | 539, 569, 582 |
| AcyI | GRCGYC | 1 cut(s) | 589 |
| AfaI | GTAC | 2 cut(s) | 338, 347 |
| AgsI | TTSAA | 4 cut(s) | 205, 373, 408, 680 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 139, 180, 593 |
| AhlI | ACTAGT | 1 cut(s) | 413 |
| AleI | CACNNNNGTG | 1 cut(s) | 35 |
| AluBI | AGCT | 6 cut(s) | 47, 57, 74, 106, 218, 267 |
| AluI | AGCT | 6 cut(s) | 47, 57, 74, 106, 218, 267 |
| AlwI | GGATC | 3 cut(s) | 539, 569, 582 |
| Aor13HI | TCCGGA | 1 cut(s) | 547 |
| AoxI | GGCC | 1 cut(s) | 446 |
| AseI | ATTAAT | 1 cut(s) | 255 |
| AspS9I | GGNCC | 1 cut(s) | 447 |
| BamHI | GGATCC | 1 cut(s) | 574 |
| BbsI | GAAGAC | 1 cut(s) | 592 |
| BccI | CCATC | 1 cut(s) | 203 |
| BcuI | ACTAGT | 1 cut(s) | 413 |
| BfaI | CTAG | 2 cut(s) | 380, 414 |
| BfmI | CTRYAG | 1 cut(s) | 15 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 597 |
| BglII | AGATCT | 1 cut(s) | 238 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 139, 180, 593 |
| BmgT120I | GGNCC | 1 cut(s) | 447 |
| BmiI | GGNNCC | 3 cut(s) | 322, 449, 576 |
| BmsI | GCATC | 1 cut(s) | 524 |
| BpiI | GAAGAC | 1 cut(s) | 592 |
| BpmI | CTGGAG | 1 cut(s) | 90 |
| Bsa29I | ATCGAT | 1 cut(s) | 543 |
| BsaHI | GRCGYC | 1 cut(s) | 589 |
| BsaWI | WCCGGW | 1 cut(s) | 547 |
| Bse1I | ACTGG | 1 cut(s) | 73 |
| BseAI | TCCGGA | 1 cut(s) | 547 |
| BseCI | ATCGAT | 1 cut(s) | 543 |
| BseGI | GGATG | 1 cut(s) | 534 |
| BseNI | ACTGG | 1 cut(s) | 73 |
| BshFI | GGCC | 1 cut(s) | 448 |
| BshVI | ATCGAT | 1 cut(s) | 543 |
| BsiSI | CCGG | 1 cut(s) | 548 |
| BsnI | GGCC | 1 cut(s) | 448 |
| Bsp13I | TCCGGA | 1 cut(s) | 547 |
| Bsp1407I | TGTACA | 1 cut(s) | 336 |
| Bsp143I | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| BspACI | CCGC | 1 cut(s) | 600 |
| BspANI | GGCC | 1 cut(s) | 448 |
| BspDI | ATCGAT | 1 cut(s) | 543 |
| BspEI | TCCGGA | 1 cut(s) | 547 |
| BspLI | GGNNCC | 3 cut(s) | 322, 449, 576 |
| BspPI | GGATC | 3 cut(s) | 539, 569, 582 |
| BsrGI | TGTACA | 1 cut(s) | 336 |
| BsrI | ACTGG | 1 cut(s) | 73 |
| BssMI | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| BssNI | GRCGYC | 1 cut(s) | 589 |
| Bst4CI | ACNGT | 3 cut(s) | 37, 156, 538 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstACI | GRCGYC | 1 cut(s) | 589 |
| BstAUI | TGTACA | 1 cut(s) | 336 |
| BstDEI | CTNAG | 2 cut(s) | 261, 280 |
| BstEII | GGTNACC | 1 cut(s) | 156 |
| BstF5I | GGATG | 1 cut(s) | 534 |
| BstKTI | GATC | 6 cut(s) | 30, 241, 466, 543, 547, 577 |
| BstMBI | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 597 |
| BstPI | GGTNACC | 1 cut(s) | 156 |
| BstSFI | CTRYAG | 1 cut(s) | 15 |
| BstV2I | GAAGAC | 1 cut(s) | 592 |
| BstX2I | RGATCY | 2 cut(s) | 238, 574 |
| BstYI | RGATCY | 2 cut(s) | 238, 574 |
| Bsu15I | ATCGAT | 1 cut(s) | 543 |
| BsuRI | GGCC | 1 cut(s) | 448 |
| BsuTUI | ATCGAT | 1 cut(s) | 543 |
| BtsCI | GGATG | 1 cut(s) | 534 |
| BtsI | GCAGTG | 1 cut(s) | 624 |
| BtsIMutI | CAGTG | 2 cut(s) | 42, 624 |
| Cfr13I | GGNCC | 1 cut(s) | 447 |
| ClaI | ATCGAT | 1 cut(s) | 543 |
| CseI | GACGC | 1 cut(s) | 597 |
| Csp6I | GTAC | 2 cut(s) | 337, 346 |
| CviAII | CATG | 4 cut(s) | 304, 340, 353, 385 |
| CviJI | RGCY | 9 cut(s) | 47, 57, 74, 106, 164, 218, 267, 295, 448 |
| CviKI_1 | RGCY | 9 cut(s) | 47, 57, 74, 106, 164, 218, 267, 295, 448 |
| CviQI | GTAC | 2 cut(s) | 337, 346 |
| DdeI | CTNAG | 2 cut(s) | 261, 280 |
| DpnI | GATC | 6 cut(s) | 29, 240, 465, 542, 546, 576 |
| DpnII | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| DraI | TTTAAA | 1 cut(s) | 643 |
| DriI | GACNNNNNGTC | 3 cut(s) | 139, 180, 593 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 139, 180, 593 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| EciI | GGCGGA | 1 cut(s) | 615 |
| Eco91I | GGTNACC | 1 cut(s) | 156 |
| EcoO109I | RGGNCCY | 1 cut(s) | 447 |
| EcoO65I | GGTNACC | 1 cut(s) | 156 |
| EcoT22I | ATGCAT | 1 cut(s) | 517 |
| FaeI | CATG | 4 cut(s) | 307, 343, 356, 388 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 225, 257 |
| FatI | CATG | 4 cut(s) | 303, 339, 352, 384 |
| FokI | GGATG | 1 cut(s) | 541 |
| FspBI | CTAG | 2 cut(s) | 380, 414 |
| GsuI | CTGGAG | 1 cut(s) | 90 |
| HaeIII | GGCC | 1 cut(s) | 448 |
| HapII | CCGG | 1 cut(s) | 548 |
| HgaI | GACGC | 1 cut(s) | 597 |
| Hin1I | GRCGYC | 1 cut(s) | 589 |
| Hin1II | CATG | 4 cut(s) | 307, 343, 356, 388 |
| HincII | GTYRAC | 2 cut(s) | 534, 622 |
| HindII | GTYRAC | 2 cut(s) | 534, 622 |
| HinfI | GANTC | 4 cut(s) | 4, 100, 116, 149 |
| HpaII | CCGG | 1 cut(s) | 548 |
| Hpy166II | GTNNAC | 2 cut(s) | 534, 622 |
| Hpy188I | TCNGA | 2 cut(s) | 121, 492 |
| Hpy188III | TCNNGA | 2 cut(s) | 31, 548 |
| Hpy8I | GTNNAC | 2 cut(s) | 534, 622 |
| HpyAV | CCTTC | 2 cut(s) | 191, 414 |
| HpyCH4III | ACNGT | 3 cut(s) | 37, 156, 538 |
| HpyCH4IV | ACGT | 1 cut(s) | 176 |
| HpyCH4V | TGCA | 5 cut(s) | 139, 172, 352, 437, 515 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 597 |
| HpyF3I | CTNAG | 2 cut(s) | 261, 280 |
| HpySE526I | ACGT | 1 cut(s) | 176 |
| Hsp92I | GRCGYC | 1 cut(s) | 589 |
| Hsp92II | CATG | 4 cut(s) | 307, 343, 356, 388 |
| Kpn2I | TCCGGA | 1 cut(s) | 547 |
| Kzo9I | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| LmnI | GCTCC | 2 cut(s) | 54, 71 |
| LpnPI | CCDG | 5 cut(s) | 43, 54, 174, 303, 561 |
| LweI | GCATC | 1 cut(s) | 524 |
| MaeI | CTAG | 2 cut(s) | 380, 414 |
| MaeII | ACGT | 1 cut(s) | 176 |
| MaeIII | GTNAC | 3 cut(s) | 141, 156, 501 |
| MalI | GATC | 6 cut(s) | 29, 240, 465, 542, 546, 576 |
| MboI | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| MboII | GAAGA | 5 cut(s) | 32, 134, 137, 248, 597 |
| MflI | RGATCY | 2 cut(s) | 238, 574 |
| MluCI | AATT | 2 cut(s) | 167, 558 |
| MnlI | CCTC | 5 cut(s) | 285, 335, 336, 438, 479 |
| Mph1103I | ATGCAT | 1 cut(s) | 517 |
| MroI | TCCGGA | 1 cut(s) | 547 |
| MseI | TTAA | 3 cut(s) | 255, 362, 642 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 635 |
| MspI | CCGG | 1 cut(s) | 548 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 597 |
| NdeII | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| NlaIII | CATG | 4 cut(s) | 307, 343, 356, 388 |
| NlaIV | GGNNCC | 3 cut(s) | 322, 449, 576 |
| NmuCI | GTSAC | 1 cut(s) | 141 |
| NsiI | ATGCAT | 1 cut(s) | 517 |
| OliI | CACNNNNGTG | 1 cut(s) | 35 |
| PfeI | GAWTC | 4 cut(s) | 4, 100, 116, 149 |
| PshBI | ATTAAT | 1 cut(s) | 255 |
| PsiI | TTATAA | 1 cut(s) | 231 |
| PspEI | GGTNACC | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 3 cut(s) | 322, 449, 576 |
| PspPI | GGNCC | 1 cut(s) | 447 |
| PsuI | RGATCY | 2 cut(s) | 238, 574 |
| RsaI | GTAC | 2 cut(s) | 338, 347 |
| RsaNI | GTAC | 2 cut(s) | 337, 346 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 635 |
| SaqAI | TTAA | 3 cut(s) | 255, 362, 642 |
| Sau3AI | GATC | 6 cut(s) | 27, 238, 463, 540, 544, 574 |
| Sau96I | GGNCC | 1 cut(s) | 447 |
| SfaNI | GCATC | 1 cut(s) | 524 |
| SfcI | CTRYAG | 1 cut(s) | 15 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 635 |
| SpeI | ACTAGT | 1 cut(s) | 413 |
| Sse9I | AATT | 2 cut(s) | 167, 558 |
| SsiI | CCGC | 1 cut(s) | 600 |
| SspMI | CTAG | 2 cut(s) | 380, 414 |
| TaaI | ACNGT | 3 cut(s) | 37, 156, 538 |
| TaiI | ACGT | 1 cut(s) | 179 |
| TaqI | TCGA | 4 cut(s) | 147, 399, 443, 543 |
| TasI | AATT | 2 cut(s) | 167, 558 |
| TatI | WGTACW | 1 cut(s) | 336 |
| TfiI | GAWTC | 4 cut(s) | 4, 100, 116, 149 |
| Tru1I | TTAA | 3 cut(s) | 255, 362, 642 |
| Tru9I | TTAA | 3 cut(s) | 255, 362, 642 |
| TscAI | CASTG | 2 cut(s) | 42, 631 |
| TseFI | GTSAC | 1 cut(s) | 141 |
| Tsp45I | GTSAC | 1 cut(s) | 141 |
| TspDTI | ATGAA | 3 cut(s) | 385, 512, 570 |
| TspRI | CASTG | 2 cut(s) | 42, 631 |
| VspI | ATTAAT | 1 cut(s) | 255 |
| XspI | CTAG | 2 cut(s) | 380, 414 |
| Zsp2I | ATGCAT | 1 cut(s) | 517 |